TCONS_00038120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038120
Unique NameTCONS_00038120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2227

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038120 ID=TCONS_00038120|Name=TCONS_00038120|organism=Clytia hemisphaerica|type=transcript|length=2227bp
NNAAAGAAGTTTTGGAAGGTGAAATCGAAAGTTCGCCCTGCTCCTTAAAC
TTAGAAGTTCGATCGAAAGGAAACGCCTTGATAACAAAAGACGAATCTAA
CAAGGCCATAATCCAGGAAACCCAATCAAATGGAGATGGCGAAAATAGAC
CATATGACTCTCAGTCAACAACAAAAGTGGAATTTCAGCGAAAAGAAGAT
CGAGAAGCAAGCGAATCATTTGACCCAACGAAGCTACGCGACCCAGAAAA
CGTTTTTAAGTCGCAGCCGCGGacgaatgaaaatgaagaagtcgTGAAAG
AACTGTCCACCACATATACATATATGAAAGGAAAATGTGGGCATTCTTTT
GCGAGCTTCCTAAAACCACGAATCTTCCATTTCACCAAAGCTTTCACACC
TTTATTTGCTTGGTTCCTTCCGATACTAGCTGCCATCCTCCAGTTCTGTT
TGAATGAGAGAAAGGAGGACGAAGTTGTGGTATTATGCGAAGATATCTGT
CAAGTAAAAATGGTTCAGTATGCCCTGGAAAAGATACACAAGCGTCCAAT
CGCATACGCACCTTACCTTACCGGAGAATATCCTCAAGACATCCACAAAA
TGAaggaaaaattcgtcaaaaatttgGACGAGATGGAGACAGTTCTGATA
TCCGATTATCGGTCTGTTCGTGGATTGGAAATGGCTCATACANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTGTGGATCCAGAAAACGAGGCCAACGC
ACATTTTCTCATCGAAGCAATCACACGAACCATAACAAATCTTGATGTCA
TTTCAACGAAACCTTTTCCACAAAATCCTTCCACGAGTATcgaaagagct
ttccaaaaatatgtcGACGGGACTTTAGCAGTCAAGACACACGTTGAATC
AAGCAAAGACGCTGAAGATCTTTTGAAAATACAATTCCATTACAACGAAA
AGGACggctcaaaacaaacaaaaattgtCTCACAGAAATTGACCGAGTTC
AGTTTCGACGTTTCAAAATCTCTAGATGAAATCAACAAATATGAAGAGCT
ATGGCAAAACTATTTCAGGATGGCAATGACTCTTTCAAGTCCCATTTCAC
CTTTAGGAACCAACAAATGGGATGGCAAAACCATGGAAAGTGTGACCTTA
AAAGATGGAACCACGCTCAGTTTTGATGatgtttggaaaattttgtgcga
aaagaaattcgcgaaattcgaagaaattttccaacaaaaaccgaACATCG
TCAATTCTTTGCGTCATGATGGTGGTGGTTGGACACTTCTCATGAAGGCT
GTTTGGGAAGAGCGTTTCGACGCTTTCGTTCACTTGATGAATTATCCTCA
AGATTTTTCACTCGTGGACAATGGTGGTTGGAATGTTCTTCATTATGTTG
GTTGGAAAGGAGAAGTTCGTCATTTGGAAAAGTTTGATCAACAAACAATC
AAAAAGTTGATCGATGGAAGAAACATAAATAACGAAACACCATTGCATCG
TGCAGCATATCGCAACagtcatgacgtcatcagttggTTGTTGGCCAAAG
GAGCGGATCATGAATTGAAAAACAATCTTGGTGAACGCCCTGATGAACAT
CCTGCTTGTGATGGTGTTACCAAAGAAATCTTTCGATCGTTTTGTTCGTC
TtgattttctttcgATGGTTTTTGTTCGTTTCGTCGACGCCTTCCATCAA
ACTTTTCCAAATTTCAACAACACATTACGCACGAGAAAAAGTCGCATCCG
TCAACCGTTTACGCTTCCGTTATTCATTTGCTTAACGTCTCTACGTCTTG
AATCATCTGGCtacaattttacaaatttaCtggaaaatggtttgttttat
tggttggaaatgttggtattgcttgtttgtagtttagtcagtgtttgagg
taagtttctgcctccttattctttagtatgacggtacattaagggtgagg
actggaggcttgtcggccgtcatcgaccgtcaccgaaacccaagttaagg
cttttgataaggctgcaaagagtttcaaagtgtatatactatgttatttc
ttttgctttcatgctggttgattataggaaagtcatttttagctgttttt
agtgatatttcccataaaaattacctcaaggggcctctgccttacgtgcc
tctgatttacgtggaaattttctcgaa
Run BLAST on NCBI

protein sequence of TCONS_00038120-protein

>TCONS_00038120-protein ID=TCONS_00038120-protein|Name=TCONS_00038120-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
KEVLEGEIESSPCSLNLEVRSKGNALITKDESNKAIIQETQSNGDGENRP
YDSQSTTKVEFQRKEDREASESFDPTKLRDPENVFKSQPRTNENEEVVKE
LSTTYTYMKGKCGHSFASFLKPRIFHFTKAFTPLFAWFLPILAAILQFCL
NERKEDEVVVLCEDICQVKMVQYALEKIHKRPIAYAPYLTGEYPQDIHKM
KEKFVKNLDEMETVLISDYRSVRGLEMAHTXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGSRKRGQRTFSHRSNHTNHNKS
Run BLAST on NCBI

transcript from alignment at sc0001779:1457..15734+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038120 ID=TCONS_00038120|Name=TCONS_00038120|organism=Clytia hemisphaerica|type=transcript|length=14278bp|location=Sequence derived from alignment at sc0001779:1457..15734+ (Clytia hemisphaerica)
NNAAAGAAGTTTTGGAAGGTGAAATCGAAAGTTCGCCCTGCTCCTTAAAC
TTAGAAGTTCGATCGAAAGGTATTACATACCATTTACGTAACATTCTTTT
ATAAGTAAAATATGCTCATTTCAATTTatgactgaaacatttttcatatt
ttaatcTTCTAATTTTCAGGAAACGCCTTGATAACAAAAGACGAATCTAA
CAAGGCCATAATCCAGGAAACCCAATCAAATGGAGATGGCGAAAATAGAC
CATATGACTCTCAGTCAACAACAAAAGTGGAATTTCAGGTTAATGAGGTA
ATTTTGTTAATGAGTGCTCTGTTTACAATTAGCTTACCATTAAAATTGAA
TAATGAAGCTTTTTTCTCTTTGTCAGAACCGATCATCGTTTTAGAAATTC
TTTCTGCagattttttgttaattctgtTTTTCCAGACTAGAACTGgttaa
ctttttgtgttgggtATTACaacttatttttgaaattccgtTCAAATGAT
CTGATTCGGATGTAATTTTCTTCTCTATAATTTGTGAAATAAACGTGCTC
TACTTCGCAACATAACCCCTCCTCTTACAGACCCGCTAGCAGGATCTTTC
AGGCAGTTGGGGTTTAAATAAAGGACCAGAATTCAATTGGGAAGATTGAT
ATATCCCATGTTTTCGAGCTAGAAAACTCAATAGGGTTAAAAAAATAGCA
CATTATTttttagagtataattttccattggggactatattttcatcaat
tatttttcaatatgaAGGGGTCCtacaacgatgtaaaaataatagataac
caacttgccttgattctcaaaaaacatccgtgttacggttgtaaaaatat
taatgacattttgcatcgtaaaaagtgcaattaaataaaaacttgcttca
tttgcaaccttctattggacaaaatcgatcacgtgatgtatatttttCCA
AAATTTGGGTTAGAAAAAGTGTATTTTCCTATAGGCAGCCTCACAGAAGG
ATTTTTTaattagatattattgttctataatcattcatctgtttattttg
tatcatgaaaccttcatgcacttttcatacgtgagatatcgcatttcaaa
tcacacatatatttttcagataacagcattttatgagcgtatatttatcc
agatgaagattaagtggtatcaggccgatccgtagtcaatttgtctaaaa
attggtacctttatcttttgaaaaaaattccaaaatttgcagtaaataac
aattcaaattttctatcaatacagtggatgtcaaaaagtgtgtcaaaatc
tagctaaaagcataacacgcactgcacacagagctttttaatagagtgct
catttcaatagtaaaacaatggttgttctcttgggagaagtgccttctag
aggtagttggttatctattatttttacatcgttgggtCCTACTTGGTCTG
TGAGGAGTGACTGATtgccattgatttcaaagccttAAAAGGGGCTAGTT
CTGAAACTCCTGGTTGGGAAATtaagccacttattttccattCAGAACAC
ATGCCCGtgtgtttttaaaacaaaatttaaaaatgcacggcaaacttaag
gcttcacttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaaact
taaggcttcactttttcttgcttaaaaaaggTAGAAGATTCTTCTCTAGC
ACCTTCGTACGATGGCTCAGAAGGCTCAAAACACGCACTTCTCGTTTGCT
TCcgaatttttttgtgacgaTACTGCAcgcttctaaaaatattttagaaa
cgCAAAAGTCCCCCTCGAAATATAGCcgttctggtcagcaaaatatATAC
CGAGTTGTAACAAATGATTTGATGTTAATAgcaaaatcatttgtggtttg
ACGAGTTGTAAATCTGGTCTGTGATTATTTATATATAACAACATTTTTTT
GGCGCGTGAATGCTCACCAGGAGCAAGTTGAAGGAATATAAAAAATCTAT
GGAATTTTTGGTTTTGTAGCAAacaaaatcttgaatttcattTACCTTTT
AAAAATCTAGCACTGAAGATGGTTTtaccgaaaagcttttgctgaaaata
aagataaaacttgttctttttctttatttctttatgGAATGGctgattta
aaaataaatctaaaGAAATACCAGGAAGTAAAGGGTACAGGACGTCTTAG
ATTTTGGTGCTTTATCTTTCTTTGCCTTGTTTCGTTGAGTATACAATTGG
TACTACTTTGAGGGAGGGGGTGGGTGGGAAAGGTGGAAgcaaaaaacaaa
gttgatattcGGTCACTTTTTGCCTCCCCGATTTAAGCCCGAAAATTCCC
CGATTTTTGCCACTGGGGGAAAACTTTGCCGACCAGCACTTAACTCGgaa
attttgattcattttgccTAACTCGACANAGGGGAAGACTTTGCCGACCA
GCACTTAACTCGGAAATCTTGATTCATTTTGCCTAATTCGACATTCATTC
TAAAGACCAAAAGAAATTTCGTTGCGCGGGCCGCTTGCTTGGAAATTACC
CGCCGTGACAACAAgttagaagtgcgcagtgtctctaggccattgaccct
agacagttctagttcacaaattttataagaactggaagtgcgtggtgagc
cttaggggTCATCGTACCTTTGGGGCTTCAACCTGAGTTCCACCACTTTA
CCAACTACAGAAGAAAAGCAAgcagtgattttttaaattcttttttattt
agtttttggacctaccccggagGGAGGgttgaggtcctataaattaacct
ttgccCGTTCatccgttcgttaccaacttttctcaggattgaatcatagg
aatcttttgatttttagtacaaaggtgcaaaatggtggtggccaaaatgt
gacggagctcgattttcgaaaaaagatatttttgggtcaaaaaacggcta
ataatgggttttttggactgtgtgaaaaattggatcattaattttttctg
attttttgcatgaaagtacgTAAaaaatggctcaagcagatttttgcaaa
aaaatgcatttttgcaAAGAAAACGCATTTTTaactataagaatcactat
ttataagaattgaacaatgttcttagccaaattattatttttattattgt
tttttctaaagaaaatgtcacggtagagtgcgatggtttgagttttctgg
aaacctgtgcatttttctgatagtggattgtttttataaagaagagtgtt
taatagcttttttatttctttttcaaaaatctttttcaatagtgttgata
gtttctcacaatagatatgctttcatttttctttatttttctgtattttg
actagttatgtcttatgtgtttcattgtttaaatgttcattgattagttg
gataaccaggtaggtccataatagtattacttgtttttttttccNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTATTAGCGAAAAGAAGATCGAGAAGCAAGCGAATCATTTGACC
CAACGAAGCTACGCGACCCAGAAAACGTTTTTAAGTCGCAGCCGCGGacg
aatgaaaatgaagaagtcgTGAAAGAACTGTCCACCACATATACATATAT
GAAAGGAAAATGTGGGCATTCTTTTGCGAGCTTCCTAAAACCACGAATCT
TCCATTTCACCAAAGCTTTCACACCTTTATTTGCTTGGTTCCTTCCGATA
CTAGCTGCCATCCTCCAGTTCTGTTTGAATGAGAGAAAGGAGGACGAAGT
TGTGGTATTATGCGAAGATATCTGTCAAGTAAAAATGGTTCAGTATGCCC
TGGAAAAGATACACAAGCGTCCAATCGCATACGCACCTTACCTTACCGGA
GAATATCCTCAAGACATCCACAAAATGAaggaaaaattcgtcaaaaattt
gGACGAGATGGAGACAGTTCTGATATCCGATTATCGGTCTGTTCGTGGAT
TGGAAATGGCTCATACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTG
TGGATCCAGAAAACGAGGCCAACGCACATTTTCTCATCGAAGCAATCACA
CGAACCATAACAAATCTTGATGTCATTTCAACGAAACCTTTTCCACAAAA
TCCTTCCACGAGTATcgaaagagctttccaaaaatatgtcGACGGGACTT
TAGCAGTCAAGACACACGTTGAATCAAGCAAAGACGCTGAAGATCTTTTG
AAAATACAATTCCATTACAACGAAAAGGACggctcaaaacaaacaaaaat
tgtCTCACAGAAATTGACCGAGTTCAGTTTCGACGTTTCAAAATCTCTAG
ATGAAATCAACAAATATGAAGAGCTATGGCAAAACTATTTCAGGTATTtt
tccctcaaaattttctaacGGGCTATTGAGCTTTACCATTTTTTATTTAA
TCTTACGTCggagaattttttgattttttctggtTTACCTCAAGAAATCG
TCAATGGAGAAAAAACCCTGAACATTAGTACCGTTCAAGGGActttggaa
ggtaaaaaaacCGAACCTTATTGTCTGTACATACTAGAATATGCATTCAT
TTCTGTATCTACCCTACCTACCGGCAGTGATAAGGATTACCATACCggta
tattttcgaaaatttggtcttttcgaaaatttcgcctttaACGAAgaatt
ttttctctgaaaatcagactacaaataaatatttttattttttgtccaGG
ATGGCAATGACTCTTTCAAGTCCCATTTCACCTTTAGGAACGTAAGTCAA
TGCTGTTgaaactctctaattcgacattctataATTCGGTGATAGTGTCT
CCGTTGAAAGTAATATCCTTTGGAGATTTTTGCTTTCCTATTTGATTTCC
GTGtgtaaaaggattttttttttgcaaatgtcTCTCTTAATCGAACTTCT
AAAGCTTTCTTTAATTCCAACTAAAACNGTTAATATTGCTACGAGGAAAC
TCCATGGAATGTGGAAACCTAAGAAAAAAGATCAATTGTGTTTACACAAC
ACTTTCTTCCTTTtataatgaaaagtaaataacaCTCATGATTGATNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNATGGAAGTTTTTAACATCCCACATCTT
AACAGGTCTGAATTTCTAAGCCACTCTCCTTTCCTCCTTCTATTCTGTAA
CGCGGAAACCATATTTCTAGACATTTCTAAACTATTCTGTTATATTCCTT
TTTTCTGAACATAATCTAAACATATTCTGTTAttcaaaaacgattttttg
aacattttctagcCTATTCAGATCATGTCTAGACTATTTTTCTTACATCG
AAACCATCTCTTTTGGCTTTTTCTATGCTATCCTGTAGAAACCGTTATTG
TGCGTTATTCCAAGTACATCTATGATGCGTAAGCCATTATTACAAGTATC
TATGCTATTCTGTTACACAGTAACCactattccaggttattctgttatgt
gaaaccactattccaggttattctgttataGGGAAACCACcattccaggt
tattctgttatgcggaaaccatcatttcatattattgttatgcggaaacc
actattccaggttattctgttatgcggaaaccatcatttcatattattgt
tatgcggaaaccactattccaggttattctgttatgcggaaaccattATT
CCAGattattctgttatgcggaaaccattTCAGGGTATTCTGTTATGCAG
AAACCACTATTCCAGGCAAttttgtaatgcggaaaccaTTATTCAACGTA
TATATGTTATTCTGTAATGCAGAAACCTTCATTCCGCGTATATCTatgct
attctgtaatgcggaaactcTCATCTTACGTCTTCCTatgctattctgta
atgcggaaaccttcaTTCTAAGTGTTCCTATatgctattctgtaatgcgg
aaaccttcaTTCTAAGTGTTCGAATTAGAAGGAGTGGTCAATTGACAAAA
AGAACCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNcattcgaattagagaaagagt
gAGATCGgtatagagaatcattcgaattagagagagcgatcaataaagaa
aatcattcgaattagagagagagagagagtgatcGTTATTGTGATCTCAG
GTTGGAAAATCTTAGCACTGAAAAAGTTAGAGAAAAGCCGTTTTAACCAA
TATGTCCTTTAACAGGAggaaaatatgaaacaaaagTGGCGAGTGTGAAA
AGAGCTTAAACCAACAATGTTTAAAGAGAGtgagagagaaaaaagaaaaa
agtattaGACGATCATGTTTATTTAACGCATCAATAGCtctatttatttg
atttgatcaCGCTATGAATATTATAGTGGTTTCCACATTCCAAGACGTTT
CCGCATAGCGATATTAACAGTGTCTCCGTTGAAAGTAATATCCTTTGGAG
ATTTTTGCTTTCCTATTTGATTTCCGTGTGTAAAAGGAATTTTTTTTGCA
AATGTCTCTCTTAATCGAACTTCTAAACCTTTCTTTAATTCCAACTAAAA
CATTCGTCCACTCAGCTGGAAAATGAAGTAAGATACTTTCTATAACCCGA
ATTCTCTTTATAGTTCTCCGGCCCTTGAAGATTGAGTTagagcatgaaca
tataaacgactggacgtctatcttttaTTATTTCTTTGAAGCGAgtttcg
ttgccgcctgtatttcaaatttggtttaaaaaatccgacaatattccgtc
atggAATATTGAATTCTTAGATAAAAGGAATTAATAGAGCTTGAACATCG
TTCGTAGTTCACAAACGaattattctcatttttttctcaagtttgcaata
ttatattttatcaacatttaaCAGCGCTGAAATGAAGATtctcaactgcg
tgtatacttttgaatcaacTTTTGtcacttcaaaaatcgaaaaaaatagt
ATACCGTCCCCCTATACCCAAGTTTAAATATTGTACAAGAGGAGTACAAT
AATTCGAACCTCATACTCTCTAAAATCTATACTTTtcagtcgaaatttca
aaatatcagccGGAGCTACAACAAGTTAACAAAGTATTTTGCCTCTCTTA
CATTCCTCTTAATGTAAATTAAAGAGTTAAAAAGAGTTTAACCATCTTCT
AAAAAGCGGGGGGGAGGTACTTGATTTTCGATATTTATTGCGTACgcact
atgtggacggcccctttatgtttttaacgaggcggcaatgAAACCAGCCA
GTGGTTTAAATATTTAtatgtttatattttcattattaGAGAAGGTCAAC
TGTATCATTCGATACCCTCTtgttttcgatgaaaatccaattgcATTCAG
ATCGCTCGTGTAAAAATGATAACAGACGATATCGGATCTAGATAAATGCA
ATgtattctggtttctagggactctcaaaggaatcaTAATCTAgtataat
tgatctattataattcctttgagagtccctagaaaccagaatgcattgca
tttatctaaatccgatatcgtctattatagCACAATCATTGAAgaagttt
ttcttcttcaatttcaatcttcattttcagatatttttgaattttttctt
tttgataatatcatgaacatataaacaactggacatctatcttttattgt
ctctttgaagcgagcttcgttgccgcctgtatttcaaaattggtatgaaa
aatccgacaatatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGC
TAGCAgccctttctacaaaaagacaaaggagatggatgtccagtcgttta
tatgttcatgataatattccactcttgtttgtcttttcaacaagcagtAA
ACTGCTATcttattcgaatttcgaattctatcaaaacttACAGCGTtctt
ttgtctccgctgcagattatattgacaCAGATTTTTAATAATATCTTCTG
CAAATAGCAACAAATGGGATGGCAAAACCATGGAAAGTGTGACCTTAAAA
GATGGAACCACGCTCAGTTTTGATGGTAAGTTCgatatgaaattttgttt
ggtATGACTTGTTATCAATTTTCAATCCATAATCAAAAGCTCGTGAGACA
TCCAAATTTTCTATTCTGGCTCATTATAAtcaaacacccccttctcacgg
acgcggtgtgatttttttcatcaagtTGCACCATAGTGCCTCGTCAAGCT
TTCAAGCCGTTGGAAATAAAATTAAGAAAGCGTTCAGAAACTTagtgaat
aaaaatataaaaatattggtatgctaagaataccaccgttatggaattta
gcaactgaatcTACCCTAACCATTTTTAGAACGTTTTACCTGTAACTTGC
CGATTATTCCCCAGaaagtttcataaaaatttcaaatttctgcTTCGGGT
ATGTATTcaatgaggccccccagcggtttgcgtgatggcgtgattgggac
ttttttcttgcgtgatggcgtgatcaatatttaggcgtgatgcgtgattt
gggctattttttgctattttttgcgtgatgacaaattttagcgatttttg
tgatgcgtgatggagaaacttttcttgcgtgatggcgtgattaggggtgc
tgCTGGGGGGCCTCATTCAATTGCATGCAAGATTTAGGTTTGGTTTAGAA
CTTAAGATTGCCGTAAGAATATTCCAGGTGGATTTTTGATGCTGATGAAA
AACTCATTCAAATAAGCATGACGGAGTCTTGTGTACTTCCCAATCACTAC
TATTTATGAGCACTTTTTTCGcacgaaataaaaaaattatttaatccATC
TAAATTGCCTGAAACAAAAGTAGTATTTCGCTACTTGTCCCCGATGCCAC
GGCCCTTGAAAGCACCCCTCTATCCCGGTGGGGGATATTTAGGCAAAACG
GGTGAAAGGTGTCTTTGGGAAAATCGCCCAAAACGTAAATCTCTCTAAAG
ggtctcaaaaatgtcaaattattttctttcgaAAGGTCGACAATCAACTT
TTGGCTGTGAAATAGCCTATTCATCTATTCTTTATTTAAAAGTTTCTCTT
GTTACAAAATGGGAGGGACACAAAGACAATCAACTAAAATCATAATAAAA
GAAATGTCGATTTCATCCTCAAGGGAAcgatttgtttttttcttctcctg
ctataaaaagaaagtttcgTGCGTTTGTTTCATTTACTTCTTATACGTGA
TGGTGGTGAGGTGACtggtttttgttgaaaagtgaACGAATGGAATGAAT
GAATTTTCTGAACTTCTAGTGTTGTATAATTTAGTGAAAGTACCCgtgca
aaattaaatttattcaagctaacattttttaaattaaactaGTCCAGCTT
TATACGACGATTTGGAaactctttttaaaaacaattttagtattttttgg
ATAGCATCTCAAATAGTTGTACTTTCTATAGTTGTAATAGTGTGTACATT
CCTATTTTATTTTCGCTGTTTGTGTATTAGTTCACTCAAAAATTCactat
tgacaaaaaattctatttcgaaaactttttcgactttttcacattcttat
aaatatttTATGAGATTCAATCTTTCACAGAATGCGATCGAGCTTCGTTT
TTAGCAATGAAAAGATTAATTTctctttggaaaaaatttttcatctaaac
caaaaaaaaattagtccATCAAGTTGGAAATAAATTTCCAATCCCGtttg
caatttttcaactttgaatCTTTTTTACTTCTTGAGATCCAgatctttaa
ttttttctaacttaaattttttaccgtcacaaataaaaatgatttcttgc
tgagcaaaaagttttcattgaaaattcaaatttttttcgccATCAAttcg
gaaatatttttctcgttctgtttgcaaaatttcagcttcaaagtattttt
agttCCTGAGATATCGagattcattttttgttgaatttcttttttactcc
gtgaaaagtttgaatttcttcattttttcttcagatgtttggaaaatttt
gtgcgaaaagaaattcgcgaaattcgaagaaattttccaacaaaaaccga
ACATCGTCAATTCTTTGCGTCATGATGGTGGTGGTTGGACACTTCTCATG
AAGGCTGTTTGGGAAGAGCGTTTCGACGCTTTCGTTCACTTGATGAATTA
TCCTCAAGATTTTTCACTCGTGGACAATGGTGGTTGGAATGTTCTTCATT
ATGTTGGTTGGAAAGGAGAAGTTCGTCATTTGGAAAAGTTTGATCAACAA
ACAATCAAAAAGTTGATCGATGGAAGAAACATAAATAACGAAACACCATT
GCATCGTGCAGCATATCGCAACagtcatgacgtcatcagttggTTGTTGG
CCAAAGGAGCGGATCATGAATTGAAAAACAATCTTGGTGAACGCCCTGAT
GAACATCCTGCTTGTGATGGTGTTACCAAAGAAATCTTTCGATCGTTTTG
TTCGTCTtggtaagaaaaatatcaactttttcacgattttttagggtggg
aatattttttaaacattgaatttattTCCGTgagatggtttgaaattttt
tttgcgatggtttgaaatttatttgcgatggtttgaaaatttttttgcga
tggtttgaaactttttttgcgatggtttgaaaatttttttgcgatggttt
gaaattttttttgcgatggtttgaaaattttttttgcgatggtttgaaac
ttttttttgcgatggtttgaaactttttttgcgatggtttgaaaCTTTCA
AATGAAATGGAAATGATATTAATGTTATTTTCATCTTGTGTCtattttat
tcttttaattgaatcaaaaataaatactCAGCACTCAAAAGTTTTTCATT
GAACAAGTTTGGCTTGCTTCGaaattattttcctttgaaCGAATTTTCTC
ACttcatttttttagattttctttcgATGGTTTTTGTTCGTTTCGTCGAC
GCCTTCCATCAAACTTTTCCAAGTAAGtccattcattcaaaatttttgaa
gcgttaaaatgtttttaacttgatcTTAACAATTTGGTCATCGAagactg
ttcttataaagtttgttcttgtacaaaaaaaaacgtgtaacgaAAGAATT
TCTTAAATTTGTTCTAGCGCAGAACCAATAGCCgtactttcttttgttta
aaaatgctgactAAGCAAATGGCATGAGATacgtttttcacattttaact
GATGGCCATGATACAATCAAACCTTTTGTGAGGACAATCAGAATCATGAA
AAAGCCAACTAAAGGACTAGGTTCGAGTTTGTTTGAAAtccattttgtaa
tttttatattgtttttttatattcCAGATTTCAACAACACATTACGCACG
AGAAAAAGTCGCATCCGTCAACCGTTTACGCTTCCGTTATTCATTTGCTT
AACGTCTCTACGTCTTGAATCATCTGGCtacaattttacaaatttaCGTA
CGTTTTTTCGACAACGTCACTCTGGATTACGTCAATCCGTATCATAACGC
TCATTAACGTCAAaccttttaaagttttttttaacattaaGAATTTTTAA
ACGACAATACTTTGGAGGAGAAGTCATATTtcttttcatgctgatttcTG
GGAATCGATTGATTAGTCTGGAGGTCACAGACCTCTATAAATTTATTTcc
tctatcatttttgttttgaaataaggATTATTAAAAGACAACTCTGTGGA
TGAGGTAACAGGATCATTTGCCAAACCACttaagatacacgtttttttta
taagaatggtgttttttcatttcatcatggatattcttaacctttaccac
gccgaagCCGTAAATTTACGTTTTAAGCTATAGCCGAAGCCGTAAATGTA
CGTTTTTCGTTCGGTTTTAAGAAAAGCCGCCCCTATCACcttaaagacgc
ctttaaatcccgggaaatgtcttatatgatggagagaaaatgtaaacaaa
ctattttcaatagtttgaaaccacctactttcgactttaactgtcaaaac
aaactggaaaatcaggcaaaatattcttttggaaattatgagctcattga
ctgctgtaactaactttttatgtttatttagtggaaaatggtttgtttta
ttggttggaaatgttggtattgcttgtttgtagtttagtcagtgtttgag
gtaagtttctgcctccttattctttagtatgacggtacattaagggtgag
gactggaggcttgtcggccgtcatcgaccgtcaccgaaacccaagttaag
gcttttgataaggctgcaaagagtttcaaagtgtatatactatgttattt
cttttgctttcatgctggttgattataggaaagtcatttttagctgtttt
tagtgatatttcccataaaaattacctcaaggggcctctgccttacgtgc
ctctgatttacgtggaaattttctcgaa

Coding sequence (CDS) from alignment at sc0001779:1457..15734+

>TCONS_00038120 ID=TCONS_00038120|Name=TCONS_00038120|organism=Clytia hemisphaerica|type=CDS|length=2529bp|location=Sequence derived from alignment at sc0001779:1457..15734+ (Clytia hemisphaerica)
AAAGAAGTTTTGGAAGGTGAAATCGAAAGTTCGCCCTGCTCCTTAAACTT
AGAAGTTCGATCGAAAGGAAACGCCTTGATAACAAAAGACGAATCTAACA
AGGCCATAATCCAGGAAACCCAATCAAATGGAGATGGCGAAAATAGACCA
TATGACTCTCAGTCAACAACAAAAGTGGAATTTCAGCGAAAAGAAGATCG
AGAAGCAAGCGAATCATTTGACCCAACGAAGCTACGCGACCCAGAAAACG
TTTTTAAGTCGCAGCCGCGGacgaatgaaaatgaagaagtcgTGAAAGAA
CTGTCCACCACATATACATATATGAAAGGAAAATGTGGGCATTCTTTTGC
GAGCTTCCTAAAACCACGAATCTTCCATTTCACCAAAGCTTTCACACCTT
TATTTGCTTGGTTCCTTCCGATACTAGCTGCCATCCTCCAGTTCTGTTTG
AATGAGAGAAAGGAGGACGAAGTTGTGGTATTATGCGAAGATATCTGTCA
AGTAAAAATGGTTCAGTATGCCCTGGAAAAGATACACAAGCGTCCAATCG
CATACGCACCTTACCTTACCGGAGAATATCCTCAAGACATCCACAAAATG
AaggaaaaattcgtcaaaaatttgGACGAGATGGAGACAGTTCTGATATC
CGATTATCGGTCTGTTCGTGGATTGGAAATGGCTCATACANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTGTGGATCCAGAAAACGAGGCCAACGCAC
ATTTTCTCATCGAAGCAATCACACGAACCATAACAAATCTTGAAAAGAAG
TTTTGGAAGGTGAAATCGAAAGTTCGCCCTGCTCCTTAAACTTAGAAGTT
CGATCGAAAGGAAACGCCTTGATAACAAAAGACGAATCTAACAAGGCCAT
AATCCAGGAAACCCAATCAAATGGAGATGGCGAAAATAGACCATATGACT
CTCAGTCAACAACAAAAGTGGAATTTCAGCGAAAAGAAGATCGAGAAGCA
AGCGAATCATTTGACCCAACGAAGCTACGCGACCCAGAAAACGTTTTTAA
GTCGCAGCCGCGGacgaatgaaaatgaagaagtcgTGAAAGAACTGTCCA
CCACATATACATATATGAAAGGAAAATGTGGGCATTCTTTTGCGAGCTTC
CTAAAACCACGAATCTTCCATTTCACCAAAGCTTTCACACCTTTATTTGC
TTGGTTCCTTCCGATACTAGCTGCCATCCTCCAGTTCTGTTTGAATGAGA
GAAAGGAGGACGAAGTTGTGGTATTATGCGAAGATATCTGTCAAGTAAAA
ATGGTTCAGTATGCCCTGGAAAAGATACACAAGCGTCCAATCGCATACGC
ACCTTACCTTACCGGAGAATATCCTCAAGACATCCACAAAATGAaggaaa
aattcgtcaaaaatttgGACGAGATGGAGACAGTTCTGATATCCGATTAT
CGGTCTGTTCGTGGATTGGAAATGGCTCATACANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTGTGGATCCAGAAAACGAGGCCAACGCACATTTTCT
CATCGAAGCAATCACACGAACCATAACAAATCTTGAAAAGAAGTTTTGGA
AGGTGAAATCGAAAGTTCGCCCTGCTCCTTAAACTTAGAAGTTCGATCGA
AAGGAAACGCCTTGATAACAAAAGACGAATCTAACAAGGCCATAATCCAG
GAAACCCAATCAAATGGAGATGGCGAAAATAGACCATATGACTCTCAGTC
AACAACAAAAGTGGAATTTCAGCGAAAAGAAGATCGAGAAGCAAGCGAAT
CATTTGACCCAACGAAGCTACGCGACCCAGAAAACGTTTTTAAGTCGCAG
CCGCGGacgaatgaaaatgaagaagtcgTGAAAGAACTGTCCACCACATA
TACATATATGAAAGGAAAATGTGGGCATTCTTTTGCGAGCTTCCTAAAAC
CACGAATCTTCCATTTCACCAAAGCTTTCACACCTTTATTTGCTTGGTTC
CTTCCGATACTAGCTGCCATCCTCCAGTTCTGTTTGAATGAGAGAAAGGA
GGACGAAGTTGTGGTATTATGCGAAGATATCTGTCAAGTAAAAATGGTTC
AGTATGCCCTGGAAAAGATACACAAGCGTCCAATCGCATACGCACCTTAC
CTTACCGGAGAATATCCTCAAGACATCCACAAAATGAaggaaaaattcgt
caaaaatttgGACGAGATGGAGACAGTTCTGATATCCGATTATCGGTCTG
TTCGTGGATTGGAAATGGCTCATACANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTGTGGATCCAGAAAACGAGGCCAACGCACATTTTCTCATCGAA
GCAATCACACGAACCATAACAAATCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022771XLOC_022771Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038120-proteinTCONS_00038120-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038120-exon-sc0001779-1491911889:1457..1525TCONS_00038120-exon-sc0001779-1491911889:1457..1525Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1510915933:1457..1525TCONS_00038120-exon-sc0001779-1510915933:1457..1525Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1575043694:1457..1525TCONS_00038120-exon-sc0001779-1575043694:1457..1525Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1491911889:1626..1744TCONS_00038120-exon-sc0001779-1491911889:1626..1744Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1510915933:1626..1744TCONS_00038120-exon-sc0001779-1510915933:1626..1744Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1575043694:1626..1744TCONS_00038120-exon-sc0001779-1575043694:1626..1744Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1491911889:5070..5999TCONS_00038120-exon-sc0001779-1491911889:5070..5999Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1510915933:5070..5999TCONS_00038120-exon-sc0001779-1510915933:5070..5999Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1575043694:5070..5999TCONS_00038120-exon-sc0001779-1575043694:5070..5999Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1491911889:6356..6397TCONS_00038120-exon-sc0001779-1491911889:6356..6397Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1510915933:6356..6397TCONS_00038120-exon-sc0001779-1510915933:6356..6397Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1575043694:6356..6397TCONS_00038120-exon-sc0001779-1575043694:6356..6397Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1491911889:11264..11331TCONS_00038120-exon-sc0001779-1491911889:11264..11331Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1510915933:11264..11331TCONS_00038120-exon-sc0001779-1510915933:11264..11331Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1575043694:11264..11331TCONS_00038120-exon-sc0001779-1575043694:11264..11331Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1491911889:13291..13765TCONS_00038120-exon-sc0001779-1491911889:13291..13765Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1510915933:13291..13765TCONS_00038120-exon-sc0001779-1510915933:13291..13765Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1575043694:13291..13765TCONS_00038120-exon-sc0001779-1575043694:13291..13765Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1491911889:14222..14278TCONS_00038120-exon-sc0001779-1491911889:14222..14278Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1510915933:14222..14278TCONS_00038120-exon-sc0001779-1510915933:14222..14278Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1575043694:14222..14278TCONS_00038120-exon-sc0001779-1575043694:14222..14278Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1491911889:14634..14753TCONS_00038120-exon-sc0001779-1491911889:14634..14753Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1510915933:14634..14753TCONS_00038120-exon-sc0001779-1510915933:14634..14753Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1575043694:14634..14753TCONS_00038120-exon-sc0001779-1575043694:14634..14753Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1491911889:15388..15734TCONS_00038120-exon-sc0001779-1491911889:15388..15734Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1510915933:15388..15734TCONS_00038120-exon-sc0001779-1510915933:15388..15734Clytia hemisphaericaexon
TCONS_00038120-exon-sc0001779-1575043694:15388..15734TCONS_00038120-exon-sc0001779-1575043694:15388..15734Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001779supercontigsc0001779:1457..15734 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.972738	0.57722	0.862676	0	1.32727	1.25268	0.624839	3.15254	1.71435	0.87835	1.75184	1.08848	1.98137	2.36588	2.12061	0.741432	0	0.169926	0.000988466	3.63507	3.13028	5.56343	3.22225	4.90349	4.22336
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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