TCONS_00038117 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038117
Unique NameTCONS_00038117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038117 ID=TCONS_00038117|Name=TCONS_00038117|organism=Clytia hemisphaerica|type=transcript|length=411bp
ACCTTCAGAGAAAGTCTCTTAGAAACAGCCGCACGTTTTGAAAGACCAAG
TAGTGGCAGTAGTAGTGGGAGCAGAAGCTTCTCTCTGGTGCCTTTTAAAC
CTCTTTAAAAAATTAGCAATGCCTTCTTTGATATCATCTGTCGTGAAGGT
ATACAATTCTGAGTCTTTGCAAAGCTCGGGATCCAGTCTAATTTCTTGGG
CACTTTGTATTTTGTCGATCAAGTCCACGCACAAAGCTCAATTAAATTTT
GATCGGATAGCAGGGGGGATTTTGTTAAAACAATCGGTGACTTGCTGCCA
GATGCCAAgcggttttttatttttttgacaacAATTTCATGTCTAAGATA
TCTGCCAATTCCTCGCTTGAATAATCCGAAAAATGCAATTGATGACTGAG
CCTTCTAGCGA
Run BLAST on NCBI

transcript from alignment at sc0001778:31983..32393

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038117 ID=TCONS_00038117|Name=TCONS_00038117|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at sc0001778:31983..32393 (Clytia hemisphaerica)
TCGCTAGAAGGCTCAGTCATCAATTGCATTTTTCGGATTATTCAAGCGAG
GAATTGGCAGATATCTTAGACATGAAATTgttgtcaaaaaaataaaaaac
cgcTTGGCATCTGGCAGCAAGTCACCGATTGTTTTAACAAAATCCCCCCT
GCTATCCGATCAAAATTTAATTGAGCTTTGTGCGTGGACTTGATCGACAA
AATACAAAGTGCCCAAGAAATTAGACTGGATCCCGAGCTTTGCAAAGACT
CAGAATTGTATACCTTCACGACAGATGATATCAAAGAAGGCATTGCTAAT
TTTTTAAAGAGGTTTAAAAGGCACCAGAGAGAAGCTTCTGCTCCCACTAC
TACTGCCACTACTTGGTCTTTCAAAACGTGCGGCTGTTTCTAAGAGACTT
TCTCTGAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022768XLOC_022768Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038117-exon-sc0001778-1491911889:31983..32393TCONS_00038117-exon-sc0001778-1491911889:31983..32393Clytia hemisphaericaexon
TCONS_00038117-exon-sc0001778-1510915933:31983..32393TCONS_00038117-exon-sc0001778-1510915933:31983..32393Clytia hemisphaericaexon
TCONS_00038117-exon-sc0001778-1575043694:31983..32393TCONS_00038117-exon-sc0001778-1575043694:31983..32393Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001778supercontigsc0001778:31983..32393 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.65795	1.31013	0.451606	1.26837	1.03601	1.28327	0.177939	0.818791	0.350423	1.81959	1.19676	1.28431	1.84585	0.405415	0.746804	1.36758	1.69811	2.48484	0.60413	0.366161	0.188569	0	0.722481	0.257017	0	0.198611
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top