|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038113 ID=TCONS_00038113|Name=TCONS_00038113|organism=Clytia hemisphaerica|type=transcript|length=730bp
AAATCATCGACAGAAATTGTTTGCAACAGATGTCCATCAGCTCAATACTC
AATGTCAATTGGAAGTTTTCTtataacttttttggaaagtatGAGCAAAT
TGGCAAGTAAAACAAATGCCATTAAACtcagcaaaattgcaaaaattgaa
aaagcaaCATGTAAAATCTGCCCAACAGGTTCTCGCTGTCCAGATAACGA
TTTAATAGCACGTGACAATTTCCATGGCTTCTATGAAATTAAAACAGCAG
ATTACCAATTCCTTTTATGTCCCGAAAGATACTGTTGTTCATCAACTACA
AGAAATTGCAAATCTCCAACAACTTGCAATCTACATCGAGAAGGAAGACT
TTGTGGCAAATGTGAAGAAGGCTATTTCATCAGTTTCTTCAATAATAAAT
GTATCAACATTTCTGAATGTACCAATGGAAGTCAACATTCTTTCTGGAcg
ctatttttcatttctttcatcaCTTTGGCTGTGCTGTTAACATTTCTTAA
AGATCTCATCACTGCTGTGAAATGTACTGGGCCGATCATAATGGCATGTT
TAAGGAAAACTTGCACAAAGAAAAGAGAAGAAGATGCCAACGATATCGAT
GAAATGGAAGAACTACAAGTAGGAGACAACCGAAGAAAACGTAAAGAGAT
TTCCGCTTCATCGATCTTCAATATTTTGGTCTCATTTTTTCAGTTGAAAG
CTTTGATAACAGTTGAGAGCAATGAGAAAA Run BLAST on NCBI protein sequence of TCONS_00038113-protein >TCONS_00038113-protein ID=TCONS_00038113-protein|Name=TCONS_00038113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
KSSTEIVCNRCPSAQYSMSIGSFLITFLESMSKLASKTNAIKLSKIAKIE
KATCKICPTGSRCPDNDLIARDNFHGFYEIKTADYQFLLCPERYCCSSTT
RNCKSPTTCNLHREGRLCGKCEEGYFISFFNNKCINISECTNGSQHSFWT
LFFISFITLAVLLTFLKDLITAVKCTGPIIMACLRKTCTKKREEDANDID
EMEELQVGDNRRKRKEISASSIFNILVSFFQLKALITVESNEK Run BLAST on NCBI transcript from alignment at sc0001777:13449..19995+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038113 ID=TCONS_00038113|Name=TCONS_00038113|organism=Clytia hemisphaerica|type=transcript|length=6547bp|location=Sequence derived from alignment at sc0001777:13449..19995+ (Clytia hemisphaerica)
AAATCATCGACAGAAATTGTTTGCAACAGATGTCCATCAGCTCAATACTC
AATGTCAATTGGAAGTTTTCTtataacttttttggaaagtatGAGCAAAT
TGGCAAGTAAAACAAATGCCATTAAACtcagcaaaattgcaaaaattgaa
aaagcaaCATGTAAAATCTGCCCAACAGGTTCTCGCTGTCCAGATAACGA
TTTAATAGCACGTGACAATTTCCATGGCTTCTATGAAATTAAAACAGCAG
ATTACCAATTCCTTTTATGTCCCGAAAGATACTGTTGTTCATCAACTACA
AGAAATTGCAAATCTCCAACAACTTGCAATCTACATCGAGAAGGAAGACT
TTGTGGCAAATGTGAAGAAGGCTATTTCATCAGTTTCTTCAATAATAAAT
GTATCAACATTTCTGAATGTACCAATGGAAGTCAACATTCTTTCTGGAcg
ctatttttcatttctttcatcaCTTTGGCTGTGCTGTTAACATTTCTTAA
AGATCTCATCACTGCTGTGAAATGTACTGGGCCGATCATAATGGCATGTT
TAAGGTAAGAAAGATTAAATATTTGCGTTCAGTAGAGTTCAAAGGACACT
TTAAtcacaagtttgtaatattcacgcaattttgtaaaatttgcgGAGTG
TTGTGATTTTCCAGCTGCACAGTTTTGCGATCAAGAGATTGCTCACTTTT
GtgattttaaaaagtttagTTTTATTCTTTACCTTGAGGGATTGGATGAG
agcagaaaacaatcaaattaaattttttgcatTGCGAATATACAAAGCTG
AAAATAATAATTACTTTATTTATCAGCTCACTAACGTAACGATAGAGAGA
GACCTCCTTTTTCGTTAATCCGAGCTTTAagtgttaaaataaaaaaatat
aagcaTTTTGATTGGCTAAGAGCATCGAAATAATTGCGATATTTGATATT
TGCACACTGTGAAAATATGACCGCGtcgacttttgggggactgggtacgC
GGGCAactaaaaccaaaacaaaaacgttcgaaaataagatcaaaacaaaa
acaaagcgagaaaattttttttggctgttCGGAgatcttttgagaaaaaa
caaacaaaatgaatcGTTTTGATAGCTGCAACAATGATAATATCCAGCAA
TTTATTGacaaatcgaaaaatcaaaatacgaCTAAAGCAACCAGTTTGTC
GAAGAGAACATACGATGCTTGGGCTAACGAACGGAACCAAACAAAGGACA
TTGAACTTTTAAATCCTGTCGATCTCGACTCGTTGTTGCAACGGTTCTTC
GCTGAAATCAAGAAGCAGAATGGAAAGGATTACGAGCCTGGTTCACTTGC
AAGCTTACAATCTGGAATCGATCGCTATCTGAGGGAGAAACGCTATCAGT
ATTCTATAATAAATGACATTGAATTCTCTAGTTCCAGGGCTGTTCTTGAA
GGAAAAGCTCGACTCCTTAGGGAACAAGGAATGGGGAAAAGACCAAACAA
GGCTGCCAGTTTAACAAAAGCAGAGGAAGAAATTCTTTGGGAATGTGGTC
AGCTTGGAACTGAAAGCCCTTCTTCGTTGATCAATACAATTTGGTGGCAG
TTTTCAATGCATTTTGGGCTCAGAGGTCGTCAAGAACACCACATTATGAA
AGTTGAAGATTTTACTTGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCTCGgt
actcgtaaaatatttctcgtattgcactcgaagtcatgcgataactagta
catattATCACTCCCGATAATATtaagaatttctaaaaattaagcCAGCT
CTTTGTAAAGTATGCTTGTTTTGTAATGAGAATAAATTTGCACAGAATTA
TGTAAGAATAAAGAGTTCCAAGTcagcattttgatttttggtttcAATAA
TCTTTTGATTGGATAATTTCGGATTAACTCGAGCTACTTGATAGGACCGA
TTCTAGTTATTAAAAAAGGCCAATGAATAACGTTGTTCATAAAGAAGCAT
CAAAAtctactaccttaagggaagaatttttcgcgagaagaaattttcgc
ggaatttaatttcgcgaatgagccgattttaacagtttcacggaatttaa
tttcgcgattgagaagaatttatcaacttagattaactttgAAGCATCAC
GGAggtgtttatatttgtttatatttgataaaaaatNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAAAAAaacaaatttcgcggaatttaatttcgcgatttaacaattttg
gtgtgtttcgcggaatttaatttcgcgaattacacccaaattcgcgaaat
taaataccgcgaaaatttcttccgcgaaaatttcttctcgcgaaaatttc
ttcccttaaggtactgtttttgcttggaaaagctcgGAACAGCTGATCTT
AATTCAGCTTGTTTGTAGTCTTATGAACTTGTAAGATAAATCACACTATA
TAAGGGCAAATTAAATCATTCTTGTTATATACCCTTATCAAGGTCTCACA
TTTCCAGAAAGTAAGggaaattaaagcagtcaggcccgctgtgCGGACTT
GCTTGACTGATAGAAAGTTGCCcaatggtaaaacttcaaattaattctct
ggaggacagaatcaagcaAATCAATGCCAAATTAGGTATTGGACAAAAAG
TGctttaattattttaaaaaattgcaaaagtacACAAGGGCACAAGGGTT
CAATTACTAAAGTACGAATAAGAGAATTACATATTCTATTTTAATACATA
TATTTCATAGCAATATATTGTTTCGACGATAtaatcgtccgttacagtga
tagtaaaggcagGAGAATATATTGGCGGTATAcagaaaaaaatcgatttt
agagTTTTGCGGAAAGATTGACAAACTTTACcagctgtaaactcttttcg
gcaaaaagccCTTTTTAGAATTCTCTTCGGCTTTTTTTAATAGTGATTTG
TCATAGATTATAATATAGTTTATAAATTGCCTTGACCATCATGACCTCTT
TAAAACAAAACTACGCgctaaaaaattacaaaactgcgtaGAAATTATAA
AAGTCGCACATAGCAGTacctaccgtgaaaagcacagctcaaaatcatat
atttacgctgtgccgacgaatcgagattctattcatcgcgcaatcagcga
agacaaaagtaaccatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgat
tagattgacacatgcgtgataaaatttctattatttgtcttcagaggtta
ctattttctttgaaaacttaacctctgatactcagggtaagcAGTACCCC
TAAACCTAAAGACAATTTCATTCGTGGGACAAAAGCTCTCTAAATATATA
TTCTTGTGAATTCCATTTTAGGAAAACTTGCACAAAGAAAAGAGAAGAAG
ATGCCAACGATATCGATGAAATGGAAGAACTACAAGTAGGAGACAACCGA
AGAAAACGTAAAGAGATTTCCGCTTCATCGATCTTCAATATTTTGGTCTC
ATTTTTTCAGTTGAAAGCTTTGATAACAGTTGAGAGCAATGAGAAAA Coding sequence (CDS) from alignment at sc0001777:13449..19995+ >TCONS_00038113 ID=TCONS_00038113|Name=TCONS_00038113|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at sc0001777:13449..19995+ (Clytia hemisphaerica)
AAATCATCGACAGAAATTGTTTGCAACAGATGTCCATCAGCTCAATACTC
AATGTCAATTGGAAGTTTTCTtataacttttttggaaagtatGAGCAAAT
TGGCAAGTAAAACAAATGCCATTAAACtcagcaaaattgcaaaaattgaa
aaagcaaCATGTAAAATCTGCCCAACAGGTTCTCGCTGTCCAGATAACGA
TTTAATAGCACGTGACAATTTCCATGGCTTCTATGAAATTAAAACAGCAG
ATTACCAATTCCTTTTATGTCCCGAAAGATACTGTTGTTCATCAACTACA
AGAAATTGCAAATCTCCAACAACTTGCAATCTACATCGAGAAGGAAGACT
TTGTGGCAAATGTGAAGAAGGCTATTTCATCAGTTTCTTCAATAATAAAT
GTATCAACATTTCTGAATGTACCAATGGAAGTCAACATTCTTTCTGGAcg
ctatttttcatttctttcatcaCTTTGGCTGTGCTGTTAACATTTCTTAA
AGATCTCATCACTGCTGTGAAATGTACTGGGCCGATCATAATGGCATGTT
TAAGGAAAACTTGCACAAAGAAAAGAGAAGAAGATGCCAACGATATCGAT
GAAATGGAAGAACTACAAGTAGGAGACAACCGAAGAAAACGTAAAGAGAT
TTCCGCTTCATCGATCTTCAATATTTTGGTCTCATTTTTTCAGTTGAAAG
CTTTGATAACAGTTGAGAGCAATGAGAAAAAATCATCGACAGAAATTGTT
TGCAACAGATGTCCATCAGCTCAATACTCAATGTCAATTGGAAGTTTTCT
tataacttttttggaaagtatGAGCAAATTGGCAAGTAAAACAAATGCCA
TTAAACtcagcaaaattgcaaaaattgaaaaagcaaCATGTAAAATCTGC
CCAACAGGTTCTCGCTGTCCAGATAACGATTTAATAGCACGTGACAATTT
CCATGGCTTCTATGAAATTAAAACAGCAGATTACCAATTCCTTTTATGTC
CCGAAAGATACTGTTGTTCATCAACTACAAGAAATTGCAAATCTCCAACA
ACTTGCAATCTACATCGAGAAGGAAGACTTTGTGGCAAATGTGAAGAAGG
CTATTTCATCAGTTTCTTCAATAATAAATGTATCAACATTTCTGAATGTA
CCAATGGAAGTCAACATTCTTTCTGGAcgctatttttcatttctttcatc
aCTTTGGCTGTGCTGTTAACATTTCTTAAAGATCTCATCACTGCTGTGAA
ATGTACTGGGCCGATCATAATGGCATGTTTAAGGAAAACTTGCACAAAGA
AAAGAGAAGAAGATGCCAACGATATCGATGAAATGGAAGAACTACAAGTA
GGAGACAACCGAAGAAAACGTAAAGAGATTTCCGCTTCATCGATCTTCAA
TATTTTGGTCTCATTTTTTCAGTTGAAAGCTTTGATAACAGTTGAGAGCA
ATGAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038113-exon-sc0001777-1491911889:13449..14002 | TCONS_00038113-exon-sc0001777-1491911889:13449..14002 | Clytia hemisphaerica | exon |
| TCONS_00038113-exon-sc0001777-1510915933:13449..14002 | TCONS_00038113-exon-sc0001777-1510915933:13449..14002 | Clytia hemisphaerica | exon |
| TCONS_00038113-exon-sc0001777-1575043694:13449..14002 | TCONS_00038113-exon-sc0001777-1575043694:13449..14002 | Clytia hemisphaerica | exon |
| TCONS_00038113-exon-sc0001777-1491911889:19820..19995 | TCONS_00038113-exon-sc0001777-1491911889:19820..19995 | Clytia hemisphaerica | exon |
| TCONS_00038113-exon-sc0001777-1510915933:19820..19995 | TCONS_00038113-exon-sc0001777-1510915933:19820..19995 | Clytia hemisphaerica | exon |
| TCONS_00038113-exon-sc0001777-1575043694:19820..19995 | TCONS_00038113-exon-sc0001777-1575043694:19820..19995 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001777 | supercontig | sc0001777:13449..19995 + |
Blast
The following BLAST results are available for this feature:
|
