TCONS_00038109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038109
Unique NameTCONS_00038109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038109 ID=TCONS_00038109|Name=TCONS_00038109|organism=Clytia hemisphaerica|type=transcript|length=510bp
tcattttcttcGTCGTAACTCCAGTCATCGTCGCCTTCAAATTTTCGTTT
AAGTTTTTTCTTGTCAGTTTCTGCGTCACTTTCACGAAATTGGTCATCAG
CTACTGCAGCTACTTCTGGAATTTCTGCTGTATTTTCCTCGGTAGAAATA
TTTTCTAAAGAGGGTGCTTCAACCGCTGGTGTTCTTTCTTCCATGTCGAA
GCTTGGAATTTCAGCTTCACAAACCTCATTCGATCGAACGATTCCGACTT
CAGCGAATTGAGTTATCGATGTACATGGTCTGTCTGGAAGCAGAACATCC
AATTCGTTGTAATATGGACAGGTACGGCGTTTGTCACCACTGTTTCTTGG
GTCAGTATTAGCAGTTTACATTTGTTATAAGCGTCTTTTAGAGTCCTCAA
TTTCAATTTGCATTTCTGGGTAGTTTTCACTGGGCCATGTTTTGAAACAG
CGCTAGCGATTGAAGACCAGACTTGATTACATCGACTTGATAAAAGTTCG
TCAAAGTTAT
Run BLAST on NCBI

transcript from alignment at sc0001775:7276..7785

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038109 ID=TCONS_00038109|Name=TCONS_00038109|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at sc0001775:7276..7785 (Clytia hemisphaerica)
ATAACTTTGACGAACTTTTATCAAGTCGATGTAATCAAGTCTGGTCTTCA
ATCGCTAGCGCTGTTTCAAAACATGGCCCAGTGAAAACTACCCAGAAATG
CAAATTGAAATTGAGGACTCTAAAAGACGCTTATAACAAATGTAAACTGC
TAATACTGACCCAAGAAACAGTGGTGACAAACGCCGTACCTGTCCATATT
ACAACGAATTGGATGTTCTGCTTCCAGACAGACCATGTACATCGATAACT
CAATTCGCTGAAGTCGGAATCGTTCGATCGAATGAGGTTTGTGAAGCTGA
AATTCCAAGCTTCGACATGGAAGAAAGAACACCAGCGGTTGAAGCACCCT
CTTTAGAAAATATTTCTACCGAGGAAAATACAGCAGAAATTCCAGAAGTA
GCTGCAGTAGCTGATGACCAATTTCGTGAAAGTGACGCAGAAACTGACAA
GAAAAAACTTAAACGAAAATTTGAAGGCGACGATGACTGGAGTTACGACg
aagaaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022760XLOC_022760Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038109-exon-sc0001775-1491911889:7276..7785TCONS_00038109-exon-sc0001775-1491911889:7276..7785Clytia hemisphaericaexon
TCONS_00038109-exon-sc0001775-1510915933:7276..7785TCONS_00038109-exon-sc0001775-1510915933:7276..7785Clytia hemisphaericaexon
TCONS_00038109-exon-sc0001775-1575043694:7276..7785TCONS_00038109-exon-sc0001775-1575043694:7276..7785Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001775supercontigsc0001775:7276..7785 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0328896	0	0	0.130564	0.317898	0.4444	0.683731	0.959692	0.280629	0.246057	0.358243	0.235495	0.235167	0.401256	0.0669284	0	0.0884818	0.0906909	0.834193	1.26324	0	0.166757	0.135143	0.122865	0	0.456828	0.907648	1.06821	3.90234	1.83845
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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