TCONS_00038108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038108
Unique NameTCONS_00038108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038108 ID=TCONS_00038108|Name=TCONS_00038108|organism=Clytia hemisphaerica|type=transcript|length=363bp
ATTTGTGACACAAAAGGCGATGACCCTACCAATCCAGTTGGTGAGAAAGG
ACTACGGACTATGCAATATGCATGCGGCAAGAAAGGAGAGAGTGGGCTGT
TACAAGAGATCAAAAATCTGTCAGCTAAAGAGTCCAAAATTTTCGTGCAT
GAAAAGTGTCGTAAACGCCTAACTGACAAAAGAACGATTCCAATCAAAAC
CCTTCCTCCAAAACGACTACGATCTTCGTTGGATAGAGTTTTCAATTAGA
AGAAATATTGCTTTTTATGTGCCAAACCATGTGATAGTAAAAAAGATGAT
TACAAGGAAGTCGAGACACTCGAGAAGCGCAAAATTGTTTTGGAGGCTGC
ATTAAACCGGAAG
Run BLAST on NCBI

transcript from alignment at sc0001775:508..870

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038108 ID=TCONS_00038108|Name=TCONS_00038108|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at sc0001775:508..870 (Clytia hemisphaerica)
CTTCCGGTTTAATGCAGCCTCCAAAACAATTTTGCGCTTCTCGAGTGTCT
CGACTTCCTTGTAATCATCTTTTTTACTATCACATGGTTTGGCACATAAA
AAGCAATATTTCTTCTAATTGAAAACTCTATCCAACGAAGATCGTAGTCG
TTTTGGAGGAAGGGTTTTGATTGGAATCGTTCTTTTGTCAGTTAGGCGTT
TACGACACTTTTCATGCACGAAAATTTTGGACTCTTTAGCTGACAGATTT
TTGATCTCTTGTAACAGCCCACTCTCTCCTTTCTTGCCGCATGCATATTG
CATAGTCCGTAGTCCTTTCTCACCAACTGGATTGGTAGGGTCATCGCCTT
TTGTGTCACAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022759XLOC_022759Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038108-exon-sc0001775-1491911889:508..870TCONS_00038108-exon-sc0001775-1491911889:508..870Clytia hemisphaericaexon
TCONS_00038108-exon-sc0001775-1510915933:508..870TCONS_00038108-exon-sc0001775-1510915933:508..870Clytia hemisphaericaexon
TCONS_00038108-exon-sc0001775-1575043694:508..870TCONS_00038108-exon-sc0001775-1575043694:508..870Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001775supercontigsc0001775:508..870 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.230375	0	0	0.0857978	0.760626	0.869955	1.4517	0.83185	0.833292	0.994939	0.700202	0.767142	1.0135	0.288938	0	0	0.172942	0.507541	0.244894	0	0	0	0	0	0	0.90344	0.631779	0	0.0859675	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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