TCONS_00038104 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038104
Unique NameTCONS_00038104
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1029

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038104 ID=TCONS_00038104|Name=TCONS_00038104|organism=Clytia hemisphaerica|type=transcript|length=1029bp
CTTGGGTTTATGCTTTGAAAACTTCTCTGCATAGGCATAGAAATATTTAG
GAttagatttaatttttgaagTAGCATCAAGTTCTTGCTTTTGTCTTTCA
TTTATGTGTGACTGTTGAAGCTTGAGTTCAATATCGATAAGTTTCTGTGC
GGTTTTGTTCGTTCaatgctttttttttaattttgatctaTTACGCATTA
AAACACGTCTGTCTCTTGGGATTATTTTAtacagtgttaaaagttcttcc
gtctcagacggatttccgtctcagagAAGTATATAGAGAgacttttccgt
ctcaaaatcctgcataattcaccaaaagttcaagaatatgtgctaatttg
ctgtgtaaaatccattttccgtctcagacgaaaatcttgctttgaccact
gtttATAAGAATGTTTTGGTTTTTGAGCTGGTACTTTGTTTGCTGAAATA
ACTGATATACACTTATCATTAAAAGTTTCGTATTGTTTCTCTGGGTCTGA
GGTTGAGTGCAAAGTCTTACGCCAGTCAATACAttgtaaatctttgttta
tgGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
CGTATTGTTTCTCTGGGTCTGAGGTTGAGTGCAAAGTCTTACGCCAGTCA
ATACAttgtaaatctttgtttatgGCTTCCCAATTTATGTTtttgttaag
aaaattaaaattatcgAATTTGctgttcaaagtttttttgttttcaacct
TTCTTGTTTCAGTAAAAGTCAAATGTGTTATAAAATGTCTAAAGTGATGA
TCTGAATGGACTGTAGGAATAACATCATAATCAAATATCATTTCATGATT
GTTTGTCAATAgaaagtctaaaatatttccatctGAATGAGTTTCTTTGT
GAATGGGTTGATTCAGGTTTAGGTGTATCATGAAATCTTGTAAAGCATTT
AAAAGTTGTTTATTGCAATTTTCAGCTGGGGTGTATCTGTCATTGATTAA
GGTATGAGGGATGTTGAAATCACCGCAGA
Run BLAST on NCBI

transcript from alignment at sc0001774:19853..20947-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038104 ID=TCONS_00038104|Name=TCONS_00038104|organism=Clytia hemisphaerica|type=transcript|length=1095bp|location=Sequence derived from alignment at sc0001774:19853..20947- (Clytia hemisphaerica)
CTTGGGTTTATGCTTTGAAAACTTCTCTGCATAGGCATAGAAATATTTAG
GATTAGATTTAATTTTTGAAGTAGCATCAAGTTCTTGCTTTTGTCTTTCA
TTTATGTGTGACTGTTGAAGCTTGAGTTCAATATCGATAAGTTTCTGTGC
GGTTTTGTTCGTTCAATGCTTTTTTTTTAATTTTGATCTATTACGCATTA
AAACACGTCTGTCTCTTGGGATTATTTTATACAGTGTTAAAAGTTCTTCC
GTCTCAGACGGATTTCCGTCTCAGAGAAGTATATAGAGAGACTTTTCCGT
CTCAAAATCCTGCATAATTCACCAAAAGTTCAAGAATATGTGCTAATTTG
CTGTGTAAAATCCATTTTCCGTCTCAGACGAAAATCTTGCTTTGACCACT
GTTTATAAGAATGTTTTGGTTTTTGAGCTGGTACTTTGTTTGCTGAAATA
ACTGATATACACTTATCATTAAAAGTTTCGTATTGTTTCTCTGGGTCTGA
GGTTGAGTGCAAAGTCTTACGCCAGTCAATACATTGTAAATCTTTGTTTA
TGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
CGTATTGTTTCTCTGGGTCTGAGGTTGAGTGCAAAGTCTTACGCCAGTCA
ATACATTGTAAATCTTTGTTTATGGCTTCCCAATTTATGTTTTTGTTAAG
AAAATTAAAATTATCGAATTTGCTGTTCAAAGTTTTTTTGTTTTCAACCT
TTCTTGTTTCAGTAAAAGTCAAATGTGTTATAAAATGTCTAAAGTGATGA
TCTGAATGGACTGTAGGAATAACATCATAATCAAATATCATTTCATGATT
GTTTGTCAATAGAAAGTCTAAAATATTTCCNGGAATAACATCATAATCAA
ATATCATTTCATGATTGTTTGTCAATAGAAAGTCTAAAATATTTCCATCT
GAATGAGTTTCTTTGTGAATGGGTTGATTCAGGTTTAGGTGTATCATGAA
ATCTTGTAAAGCATTTAAAAGTTGTTTATTGCAATTTTCAGCTGGGGTGT
ATCTGTCATTGATTAAGGTATGAGGGATGTTGAAATCACCGCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022755XLOC_022755Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038104-exon-sc0001774-1575043694:20125..20947TCONS_00038104-exon-sc0001774-1575043694:20125..20947Clytia hemisphaericaexon
TCONS_00038104-exon-sc0001774-1575043694:19853..20058TCONS_00038104-exon-sc0001774-1575043694:19853..20058Clytia hemisphaericaexon
TCONS_00038104-exon-sc0001774-1510915933:20125..20947TCONS_00038104-exon-sc0001774-1510915933:20125..20947Clytia hemisphaericaexon
TCONS_00038104-exon-sc0001774-1510915933:19853..20058TCONS_00038104-exon-sc0001774-1510915933:19853..20058Clytia hemisphaericaexon
TCONS_00038104-exon-sc0001774-1491911889:20125..20947TCONS_00038104-exon-sc0001774-1491911889:20125..20947Clytia hemisphaericaexon
TCONS_00038104-exon-sc0001774-1491911889:19853..20058TCONS_00038104-exon-sc0001774-1491911889:19853..20058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001774supercontigsc0001774:19853..20947 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68987	1.7708	3.65419	4.58781	4.07236	3.91545	3.03246	5.50919	1.89587	2.42093	2.34394	2.49834	2.04603	1.92952	1.13302	1.30316	1.49405	1.79767	1.97767	1.65036	2.89305	3.56873	0.900589	1.20724	1.67228	2.78307	2.57945	3.46967	1.44064	1.39394
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038104 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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