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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038103 ID=TCONS_00038103|Name=TCONS_00038103|organism=Clytia hemisphaerica|type=transcript|length=374bp
tcagttgaaaaggaacttcgcaacccttataccaTACACTTCGAACGACA
ATCGCCTATGAGAAGGACGACGATAATTTTGAAACAACTCCCGATAGCTG
AAGAAAAACGTACGAGTTCCAGTAAAAAGAAGAGGcgtaaaagaatgaac
atgCCATCCAGCCGGAAACCGAAAACTAAAGTAACGAAGGAGAACTCACC
ACCCATCCAGAAAAAGAAACACAACTTCCAGGCTAGTGATGGTTCGTTTA
CCGTGGAAGACCTCGATGACGCCACACTGTTGGTCAATTTCCCGAAGTAC
AAGCACTTTCACTGTCTCATCAAACACCAAGGGGATTCTCTTAATGATGT
GATTGTGGGAAGAAATTACCGtaa Run BLAST on NCBI protein sequence of TCONS_00038103-protein >TCONS_00038103-protein ID=TCONS_00038103-protein|Name=TCONS_00038103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
SVEKELRNPYTIHFERQSPMRRTTIILKQLPIAEEKRTSSSKKKRRKRMN
MPSSRKPKTKVTKENSPPIQKKKHNFQASDGSFTVEDLDDATLLVNFPKY
KHFHCLIKHQGDSLNDVIVGRNYR Run BLAST on NCBI transcript from alignment at sc0001774:10173..16484- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038103 ID=TCONS_00038103|Name=TCONS_00038103|organism=Clytia hemisphaerica|type=transcript|length=6312bp|location=Sequence derived from alignment at sc0001774:10173..16484- (Clytia hemisphaerica)
TCAGTTGAAAAGGAACTTCGCAACCCTTATACCATACACTTCGAACGACA
ATCGCCTATGAGAAGGACGACGATAATTTTGAAACAACTCCCGATAGCTG
AAGAAAAACGTAAGCAGGATAATTTTTGCTTGTTAGTTTCTTTCTCGTCA
AAAATGCATGAAAATTTTCAAAATAAACTCTGAAAACCCATTTTTACCGG
AGCCAAAGTTGTTTTTATTAGATTTGGAGAGTTAAGGTGACAAGTCCAGA
AGCCAAACCCACTTGACACTGAAGGAAATGAATTTTAGCAACGTCTTAAC
ATAGTTTGCACCCCCCCTTTTTAATAGGGGGGGATGCCAACTTTCTGGAG
GGCCTTTGTAGGGGGGGTACCGAGATCTGCCGAAAAAACTAGGGGGGATG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAAGCGAGTTTCCTTCG
AAACGGATTTTCTGTAAAAAAAAGGGGGGGATAAGATTTCATTACAAAAG
GGGGGAATGGGTATATAGGGGGGGATGAAATAAACCTAGGGGGGTTCAGA
CCCCTCTGCAAACTATGCTTAAAGGGGTTTTTTTGTCTGAGATTGAAGGT
TCAATGAGGTTTGCTCTTCAACTATTTCGAGAAGACATATAATTTTAATA
AGACATATAATTTTAATAAGACCGTATTTGAGATGGTTTAATTAATTATA
AACAACTTTTCAGAGTTTTCTGGTGCACCCACCACCTGTGTGGCTAAAGT
TCACTCAATTTTAGTCATTTTAAGTCATTTTAAGTCATTTTCAGTCCAAA
AATCACAAGGACTGCTAGAAAACATGTAGATGGCAAATAACTACTTTTGG
ATCATTTATGGGAATTTCTCCAAGTGTCAAAAAGGCTTTTCTTGGTACAA
TTGAGTAATGTTTGAAAAGTCTACAAATCTTTTGTCCATGATTGCAGACT
TAAAAGTTAGATAAGTAAGTCTTATCCTGAAGGCTCCTTTTTCTGATAGC
TATCTGCTCGAAAGGTGCCACTCTTTCTCGCAAAGTACCGCCAAAACTTT
ATAGACCTTTTCCCAAGTCTCTGATTCAAACATCTAAATTATATTGTGAC
GTTAATTTATCGCCTTAATGTAAGGGTATCTTGCACTTTCTACAAGCGCA
CTCTTAAGACTGGTCTCCTCTTGCGCGCGCTGCGATCGCCCTTTTTGGCT
TCAGTCCTTTTTGCTTGGAAAAAAGATTACGTCATAAAAATGTAGCGCGC
TCTCGAAAAAAAAGTTTAACACATTTCAACTTTTTTTCAACCGTTGCGTC
AGATCGCGCCAATGGAGTTGTTTCATTCACTTTTCACCAATAGTGTGGAA
GCTTTGCTCGAAAACGTGCGATCGAAGCTAATCTCATAACCGATCACCAT
TGCTAAGGCATATGATGATCTGAGAAGTTTATTCAGCGGAATTTTACAAA
ACCGCGTTCGGCGGGGTCTGGGAAAAACTACGACACGTGACCAGATACCG
GTATATGATTGGCCCGCAGTTTTCAAGATTTATTTATCATTTTATAGGAA
ACAATTTTTTGTAAGAACTAACTGGCAAAAACCTCTGTATCTTTTGAAAT
ATTGAATATTTTCCAAGAATTTTTTCAGATGATAACATGCAATTGTACAT
GGAACAATCTGAATCTTCACCTGTCAAAAATAGTAACTTTTTTGCTGCTA
GAATGCCGTTTGAGCACCTGAACATCATGGCTACAAAATCATAAACAGTA
TCATTTAATTTGGAGTTTTAAAACCTTTTCAAGCCAAAAAATACTTTCCA
GAACTTAGAGTTGGTATTTGTTTATCTTCCAAATCTATTAAACAGTTCTC
ATGAAAGGTTTTTGAAGTCTGATTGCAAAAAGTNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGAAAAGTACTCTGAAATTTCAGAGTGTCGGCCATCAAAGAAAACCCG
AGAACCTTCGCAGGTCTTCTTGCAGAACCATTCCCTTTAGAGCGCATGCG
TGGAATGCATGGAGCACGAAGAGCTGCTTGGAGGTTAGATCGAAGCGCGC
GAAAGTAGAGACTTGCCTTTACACTTGTTTTTTTTATACCGTCGTCAAGA
CGAATTTTCCTTGTATTTTTACCAAAAGCGCCACTAGAGGTTGATGGGTG
TATTTAGATGACGTTCCTCATCTTTTGTTCCCACAGGTACGAGTTCCAGT
AAAAAGAAGAGGCGTAAAAGAATGAACATGCCATCCAGCCGGAAACCGAA
AACTAAAGTAACGAAGGAGAACTCACCACCCATCCAGAAAAAGAAACACA
ACTTCCAGGCTAGGTATTGAATGTGAATTAGATACTTCCGCTTTGAATGG
TCACTCTTTTTTACCATGTGGAAACCGTGTCAGCTAATTCGCTCAAGAAT
AGTTTCTAGTGCACAAACCGAGTGGACTTTTGTTAATGGTTCATTCACCA
GCTCAACTTCTTCTGATGCGCCTACCCACAGATTTTTTATAACTTTGAAT
TTCATTTTCTCTTCTCAGTGATGGTTCGTTTACCGTGGAAGACCTCGATG
ACGCCACACTGTTGGTCAATTTCCCGAAGTACAAGCACTTTCACTGTCTC
ATCAAACACCAAGGTTCGAATGTCTCCTTAACTAGAACATGTTTTATGGT
CTCTTCAGTTAACAATGCCTTACAAATCTTACTCCATATTTGTGCTCCTC
GTGCGTTTTTTAGTTATAGAGACTCCATTTTATCACATTAGGTATGACCT
CTGTATTTTCATTGAAGTCAATATTTATATATGGGCTTTGATTTTTACCA
GCAGTAATTTTATCTGCAAGAACATCCTTAGAAGACTACTCTCGGTTACT
AATAGCCGAGGGGTTTGGAATAAGCGGCGGGGGGGGGGGGGGGGGGNGGC
TTTGATTTTTACCAGCAGTAACTTTATCTGCAAGAACATCCTTAGAAGAC
TACTCTCGGGTACCTAATAGCCGGGGGTTTGGAATAAGCGGGCGGGGGGT
TGGAATAAAAATGTCCTGGGTGGAAAACTTTTGAAAAGGAGGCTAATACA
GCAGAATTAGGACAAAAGAAAGAACTTTCAAAAACATTTTTCCAAAAATG
AATAAGCGGGGGGGGGGAGTTGGAATATGTCCTGGGGGAAAATTTTTGAA
AAATTAATTAGCGGGGGCACAGGGGGGGGGACGGCTCCATTAGGTACCCG
AGAGTACCTATTAAAAGCCTGTGAAACGTACGAAACTCTAAACATGCTGT
ACTCTTTTCGTTATTTCAGGGGATTCTCTTAATGATGTGATTGTGGGAAG
AAATTACCGTAA Coding sequence (CDS) from alignment at sc0001774:10173..16484- >TCONS_00038103 ID=TCONS_00038103|Name=TCONS_00038103|organism=Clytia hemisphaerica|type=CDS|length=1488bp|location=Sequence derived from alignment at sc0001774:10173..16484- (Clytia hemisphaerica)
GGGATTCTCTTAATGATGTGATTGTGGGAAGAAATTACCGTTGATGGTTC
GTTTACCGTGGAAGACCTCGATGACGCCACACTGTTGGTCAATTTCCCGA
AGTACAAGCACTTTCACTGTCTCATCAAACACCAAGGTACGAGTTCCAGT
AAAAAGAAGAGGCGTAAAAGAATGAACATGCCATCCAGCCGGAAACCGAA
AACTAAAGTAACGAAGGAGAACTCACCACCCATCCAGAAAAAGAAACACA
ACTTCCAGGCTAGTCAGTTGAAAAGGAACTTCGCAACCCTTATACCATAC
ACTTCGAACGACAATCGCCTATGAGAAGGACGACGATAATTTTGAAACAA
CTCCCGATAGCTGAAGAAAAACGGGATTCTCTTAATGATGTGATTGTGGG
AAGAAATTACCGTTGATGGTTCGTTTACCGTGGAAGACCTCGATGACGCC
ACACTGTTGGTCAATTTCCCGAAGTACAAGCACTTTCACTGTCTCATCAA
ACACCAAGGTACGAGTTCCAGTAAAAAGAAGAGGCGTAAAAGAATGAACA
TGCCATCCAGCCGGAAACCGAAAACTAAAGTAACGAAGGAGAACTCACCA
CCCATCCAGAAAAAGAAACACAACTTCCAGGCTAGTCAGTTGAAAAGGAA
CTTCGCAACCCTTATACCATACACTTCGAACGACAATCGCCTATGAGAAG
GACGACGATAATTTTGAAACAACTCCCGATAGCTGAAGAAAAACGGGATT
CTCTTAATGATGTGATTGTGGGAAGAAATTACCGTTGATGGTTCGTTTAC
CGTGGAAGACCTCGATGACGCCACACTGTTGGTCAATTTCCCGAAGTACA
AGCACTTTCACTGTCTCATCAAACACCAAGGTACGAGTTCCAGTAAAAAG
AAGAGGCGTAAAAGAATGAACATGCCATCCAGCCGGAAACCGAAAACTAA
AGTAACGAAGGAGAACTCACCACCCATCCAGAAAAAGAAACACAACTTCC
AGGCTAGTCAGTTGAAAAGGAACTTCGCAACCCTTATACCATACACTTCG
AACGACAATCGCCTATGAGAAGGACGACGATAATTTTGAAACAACTCCCG
ATAGCTGAAGAAAAACGGGATTCTCTTAATGATGTGATTGTGGGAAGAAA
TTACCGTTGATGGTTCGTTTACCGTGGAAGACCTCGATGACGCCACACTG
TTGGTCAATTTCCCGAAGTACAAGCACTTTCACTGTCTCATCAAACACCA
AGGTACGAGTTCCAGTAAAAAGAAGAGGCGTAAAAGAATGAACATGCCAT
CCAGCCGGAAACCGAAAACTAAAGTAACGAAGGAGAACTCACCACCCATC
CAGAAAAAGAAACACAACTTCCAGGCTAGTCAGTTGAAAAGGAACTTCGC
AACCCTTATACCATACACTTCGAACGACAATCGCCTATGAGAAGGACGAC
GATAATTTTGAAACAACTCCCGATAGCTGAAGAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038103-exon-sc0001774-1575043694:16376..16484 | TCONS_00038103-exon-sc0001774-1575043694:16376..16484 | Clytia hemisphaerica | exon |
| TCONS_00038103-exon-sc0001774-1575043694:11172..11298 | TCONS_00038103-exon-sc0001774-1575043694:11172..11298 | Clytia hemisphaerica | exon |
| TCONS_00038103-exon-sc0001774-1575043694:10872..10966 | TCONS_00038103-exon-sc0001774-1575043694:10872..10966 | Clytia hemisphaerica | exon |
| TCONS_00038103-exon-sc0001774-1575043694:10173..10215 | TCONS_00038103-exon-sc0001774-1575043694:10173..10215 | Clytia hemisphaerica | exon |
| TCONS_00038103-exon-sc0001774-1510915933:16376..16484 | TCONS_00038103-exon-sc0001774-1510915933:16376..16484 | Clytia hemisphaerica | exon |
| TCONS_00038103-exon-sc0001774-1510915933:11172..11298 | TCONS_00038103-exon-sc0001774-1510915933:11172..11298 | Clytia hemisphaerica | exon |
| TCONS_00038103-exon-sc0001774-1510915933:10872..10966 | TCONS_00038103-exon-sc0001774-1510915933:10872..10966 | Clytia hemisphaerica | exon |
| TCONS_00038103-exon-sc0001774-1510915933:10173..10215 | TCONS_00038103-exon-sc0001774-1510915933:10173..10215 | Clytia hemisphaerica | exon |
| TCONS_00038103-exon-sc0001774-1491911889:16376..16484 | TCONS_00038103-exon-sc0001774-1491911889:16376..16484 | Clytia hemisphaerica | exon |
| TCONS_00038103-exon-sc0001774-1491911889:11172..11298 | TCONS_00038103-exon-sc0001774-1491911889:11172..11298 | Clytia hemisphaerica | exon |
| TCONS_00038103-exon-sc0001774-1491911889:10872..10966 | TCONS_00038103-exon-sc0001774-1491911889:10872..10966 | Clytia hemisphaerica | exon |
| TCONS_00038103-exon-sc0001774-1491911889:10173..10215 | TCONS_00038103-exon-sc0001774-1491911889:10173..10215 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001774 | supercontig | sc0001774:10173..16484 - |
Blast
The following BLAST results are available for this feature:
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