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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038102 ID=TCONS_00038102|Name=TCONS_00038102|organism=Clytia hemisphaerica|type=transcript|length=1996bp
AACAAGATCATTTTTGAACTATCACTTTctctattttgataaaaaggctG
TTATATGTGTTGTTTTTTCAATAACTACTGTTTTGTCTATATGCAAAAAA
AGgagtttcttcaaaaaatataaaatggcATCACAATTGAATTTACACCA
GAAAATCATTACATTGAAATCGAAGATTATCGATCCTTCCAAATGCTTAC
CACAGACGTCATTATACCATCAAATACAAGCAAATGCACAATCTACCATT
GACAACCAGAACCGAAAGTTCAATCTCGGGAATGGTCAACTATTTACTGA
TCCCATTCTTGCCGCTGATCAGCTTCTCCTTAGAGAatatgctgattcag
cattatTTGACACCAACCGCCACAATCCAATATTCATCCCTAATGTTTTT
CAATCTCACCAATACACGAAAAAGGATTCAACCGTACATCTCCTCGACTA
CGATGTTGATATAAACACTCTCAAGAAATGTTTGGATAATTTGAAGAAGG
ATTCACCAGACTACTGGTTTACAGGAGAACTTCAGGCTTTCTATGATCTC
CAATTAAACAACTCTAGCGGTAATGAAATCAACGCAAAGGAATTCTCTTA
TTGGATCTTGAATGTCAAAATCGTGTATCTTTTGATGGAAGAGATTGGCA
ATCAACTGATCCAAAGTTCTTCCTCTCGTCAACCAATTCTTAACAATCTG
ACTTTACCATCAACAACTGAAGACAGCAAGACGTTCATCCAAGCTTGTAT
TCAGGAATTGGCTTCAAAATCACCAGGATCAAAACTGGAACAGACTCTCA
AAAAGACATTAAAAGACGCTAAAAAAGAAGTCGAAAACTTGGTAAAACAA
AACCAACCATCCCACTCAACAATAAAATGGCTTTTCGGATTAGTTTTATC
GGAGCTTGGTGAAAAAGGAGAACACTCATTCTTCCATAAACTCTATTTCC
TCAAAGATGACCCTGTTCTTGAAGATACTGTGATTCTCAGTTCCATCAAT
TTTCTCACCAATGTCCAAAAGAAAATGCATCAGGAGATTGACGTCCTTCT
TTTCTCGTGGACCAAAAAATTAATCATAGGCGTTGAAATCAAACGGACAC
TGACTGGAAAAGCTTTTGACCAGTTGAATAAATACCATAAACTGATAGAG
GGAAAATTGGGTGATCAGTTGGGACACGGCTGGACGTATCATCCAGTCAT
ATGTGTTGGCACGGACGATCTTTCCTTCAACAATCAACATTACATTGACC
AAGAAACAGATTTGAAATGTTGGTTATCCACCTTGCTGGCAAAATATCCT
ACCGTTTCCTCTGGAATACCTTTCATCCCAGCAGTAAATCAAGTCAAAGA
CCTCCTAAGAATCATTGTGTTTGCAATTCATGCTTCAAAAACAGCACCCA
TTACCACATCAAACTGGGTGGAATATATCTCACAAGCCATCGATACCGTC
TGCACCACTGACAACATACTCTTTTACAGTCAGCGTCAACTTCCCATCAT
GAAGACAGACACTTCTGAATTCGATAAGATCATTCTTTTGGCTCCCTACG
GATGCGGAAAGTCTTTCATCCTTCAGGAGAAAGCAAAGCAATTGAGTGGA
ATGGCGCAATACAAAGGACGTGTTATGTATGCCATTGAGACAAGTGATTT
AGAAACNTCGTAAACTCTATTCCCTCAAAGACGACCCTGTTCTTGAAGAT
ACTGTGATTCTCAGTTCCATCAATTTTCTCACCAATGTCTAAAAGAAAAT
GCATCAGGAGATTGACGTCCTTCTTGTCTCGTGGACCAAGAAATTAATCA
TAGGCGTTGAAATCAAACGGACACTAACTGGAAAAGCTTTTGACCAGTTA
AATAAATACCATAAACTGATAGAGGAGAAATTGGGTGATCAGTTGGGACA
CGGCTGGACATATTATCCAGTCATATGTGTTGGCACGGACGATCTTTCCT
TCAACAATCAACATTACATTGACCAAGAAACAGATTTGAAATGTTG Run BLAST on NCBI protein sequence of TCONS_00038102-protein >TCONS_00038102-protein ID=TCONS_00038102-protein|Name=TCONS_00038102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp
TRSFLNYHFLYFDKKAVICVVFSITTVLSICKKRSFFKKYKMASQLNLHQ
KIITLKSKIIDPSKCLPQTSLYHQIQANAQSTIDNQNRKFNLGNGQLFTD
PILAADQLLLREYADSALFDTNRHNPIFIPNVFQSHQYTKKDSTVHLLDY
DVDINTLKKCLDNLKKDSPDYWFTGELQAFYDLQLNNSSGNEINAKEFSY
WILNVKIVYLLMEEIGNQLIQSSSSRQPILNNLTLPSTTEDSKTFIQACI
QELASKSPGSKLEQTLKKTLKDAKKEVENLVKQNQPSHSTIKWLFGLVLS
ELGEKGEHSFFHKLYFLKDDPVLEDTVILSSINFLTNVQKKMHQEIDVLL
FSWTKKLIIGVEIKRTLTGKAFDQLNKYHKLIEGKLGDQLGHGWTYHPVI
CVGTDDLSFNNQHYIDQETDLKCWLSTLLAKYPTVSSGIPFIPAVNQVKD
LLRIIVFAIHASKTAPITTSNWVEYISQAIDTVCTTDNILFYSQRQLPIM
KTDTSEFDKIILLAPYGCGKSFILQEKAKQLSGMAQYKGRVMYAIETSDL
EXS Run BLAST on NCBI transcript from alignment at sc0001774:4893..7400+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038102 ID=TCONS_00038102|Name=TCONS_00038102|organism=Clytia hemisphaerica|type=transcript|length=2508bp|location=Sequence derived from alignment at sc0001774:4893..7400+ (Clytia hemisphaerica)
AACAAGATCATTTTTGAACTATCACTTTctctattttgataaaaaggctG
TTATATGTGTTGTTTTTTCAATAACTACTGTTTTGTCTATATGCAAAAAA
AGgagtttcttcaaaaaatataaaatggcATCACAATTGAATTTACACCA
GAAAATCATTACATTGAAATCGAAGATTATCGATCCTTCCAAATGCTTAC
CACAGACGTCATTATACCATCAAATACAAGCAAATGCACAATCTACCATT
GACAACCAGAACCGAAAGTTCAATCTCGGGAATGGTCAACTATTTACTGA
TCCCATTCTTGCCGCTGATCAGCTTCTCCTTAGAGAatatgctgattcag
cattatTTGACACCAACCGCCACAATCCAATATTCATCCCTAATGTTTTT
CAATCTCACCAATACACGAAAAAGGATTCAACCGTACATCTCCTCGACTA
CGATGTTGATATAAACACTCTCAAGAAATGTTTGGATAATTTGAAGAAGG
ATTCACCAGACTACTGGTTTACAGGAGAACTTCAGGCTTTCTATGATCTC
CAATTAAACAACTCTAGCGGTAATGAAATCAACGCAAAGGAATTCTCTTA
TTGGATCTTGAATGTCAAAATCGTGTATCTTTTGATGGAAGAGATTGGCA
ATCAACTGATCCAAAGTTCTTCCTCTCGTCAACCAATTCTTAACAATCTG
ACTTTACCATCAACAACTGAAGACAGCAAGACGTTCATCCAAGCTTGTAT
TCAGGAATTGGCTTCAAAATCACCAGGATCAAAACTGGAACAGACTCTCA
AAAAGGTAACTTATCAATTTTATCAATGTTCAGAGAGATTTGTATTTAAA
AACTTAATAATCACAccccttcaaagagagcaattaatcgttaatttcat
cctgtagagagcaattagtCGTTAATCACTTTCTTCGATGCCGcaccaat
gtttacaaaattgattttaatgtttttcttacattttttatcgaacgttt
taattgcattcgaaattgattttgtgaaaaagaaaatctataaacaacga
taaaagaaaaatataaatttttcagTGTGATTTACTTTTCTGACAGGGAA
AAAGCAGTGAAACCGATTAaagtgcgattagctcgtaatcacatgataac
tcagacaattcgaaaattgcactcgtgatttttttgtttcgaattttcct
cgtcctttcggacttcactcgtgcaattattctcgaattgcactcgtaaT
CATGTGACTACATATACTAACCTCAATTTGCGAATTGAATTGTAAAAATC
TCTTATTTTATCTCCAGACATTAAAAGACGCTAAAAAAGAAGTCGAAAAC
TTGGTAAAACAAAACCAACCATCCCACTCAACAATAAAATGGCTTTTCGG
ATTAGTTTTATCGGAGCTTGGTGAAAAAGGAGAACACTCATTCTTCCATA
AACTCTATTTCCTCAAAGATGACCCTGTTCTTGAAGATACTGTGATTCTC
AGTTCCATCAATTTTCTCACCAATGTCCAAAAGAAAATGCATCAGGAGAT
TGACGTCCTTCTTTTCTCGTGGACCAAAAAATTAATCATAGGCGTTGAAA
TCAAACGGACACTGACTGGAAAAGCTTTTGACCAGTTGAATAAATACCAT
AAACTGATAGAGGGAAAATTGGGTGATCAGTTGGGACACGGCTGGACGTA
TCATCCAGTCATATGTGTTGGCACGGACGATCTTTCCTTCAACAATCAAC
ATTACATTGACCAAGAAACAGATTTGAAATGTTGGTTATCCACCTTGCTG
GCAAAATATCCTACCGTTTCCTCTGGAATACCTTTCATCCCAGCAGTAAA
TCAAGTCAAAGACCTCCTAAGAATCATTGTGTTTGCAATTCATGCTTCAA
AAACAGCACCCATTACCACATCAAACTGGGTGGAATATATCTCACAAGCC
ATCGATACCGTCTGCACCACTGACAACATACTCTTTTACAGTCAGCGTCA
ACTTCCCATCATGAAGACAGACACTTCTGAATTCGATAAGATCATTCTTT
TGGCTCCCTACGGATGCGGAAAGTCTTTCATCCTTCAGGAGAAAGCAAAG
CAATTGAGTGGAATGGCGCAATACAAAGGACGTGTTATGTATGCCATTGA
GACAAGTGATTTAGAAACNTCGTAAACTCTATTCCCTCAAAGACGACCCT
GTTCTTGAAGATACTGTGATTCTCAGTTCCATCAATTTTCTCACCAATGT
CTAAAAGAAAATGCATCAGGAGATTGACGTCCTTCTTGTCTCGTGGACCA
AGAAATTAATCATAGGCGTTGAAATCAAACGGACACTAACTGGAAAAGCT
TTTGACCAGTTAAATAAATACCATAAACTGATAGAGGAGAAATTGGGTGA
TCAGTTGGGACACGGCTGGACATATTATCCAGTCATATGTGTTGGCACGG
ACGATCTTTCCTTCAACAATCAACATTACATTGACCAAGAAACAGATTTG
AAATGTTG Coding sequence (CDS) from alignment at sc0001774:4893..7400+ >TCONS_00038102 ID=TCONS_00038102|Name=TCONS_00038102|organism=Clytia hemisphaerica|type=CDS|length=3324bp|location=Sequence derived from alignment at sc0001774:4893..7400+ (Clytia hemisphaerica)
ACAAGATCATTTTTGAACTATCACTTTctctattttgataaaaaggctGT
TATATGTGTTGTTTTTTCAATAACTACTGTTTTGTCTATATGCAAAAAAA
GgagtttcttcaaaaaatataaaatggcATCACAATTGAATTTACACCAG
AAAATCATTACATTGAAATCGAAGATTATCGATCCTTCCAAATGCTTACC
ACAGACGTCATTATACCATCAAATACAAGCAAATGCACAATCTACCATTG
ACAACCAGAACCGAAAGTTCAATCTCGGGAATGGTCAACTATTTACTGAT
CCCATTCTTGCCGCTGATCAGCTTCTCCTTAGAGAatatgctgattcagc
attatTTGACACCAACCGCCACAATCCAATATTCATCCCTAATGTTTTTC
AATCTCACCAATACACGAAAAAGGATTCAACCGTACATCTCCTCGACTAC
GATGTTGATATAAACACTCTCAAGAAATGTTTGGATAATTTGAAGAAGGA
TTCACCAGACTACTGGTTTACAGGAGAACTTCAGGCTTTCTATGATCTCC
AATTAAACAACTCTAGCGGTAATGAAATCAACGCAAAGGAATTCTCTTAT
TGGATCTTGAATGTCAAAATCGTGTATCTTTTGATGGAAGAGATTGGCAA
TCAACTGATCCAAAGTTCTTCCTCTCGTCAACCAATTCTTAACAATCTGA
CTTTACCATCAACAACTGAAGACAGCAAGACGTTCATCCAAGCTTGTATT
CAGGAATTGGCTTCAAAATCACCAGGATCAAAACTGGAACAGACTCTCAA
AAAGACATTAAAAGACGCTAAAAAAGAAGTCGAAAACTTGGTAAAACAAA
ACCAACCATCCCACTCAACAATAAAATGGCTTTTCGGATTAGTTTTATCG
GAGCTTGGTGAAAAAGGAGAACACTCATTCTTCCATAAACTCTATTTCCT
CAAAGATGACCCTGTTCTTGAAGATACTGTGATTCTCAGTTCCATCAATT
TTCTCACCAATGTCCAAAAGAAAATGCATCAGGAGATTGACGTCCTTCTT
TTCTCGTGGACCAAAAAATTAATCATAGGCGTTGAAATCAAACGGACACT
GACTGGAAAAGCTTTTGACCAGTTGAATAAATACCATAAACTGATAGAGG
GAAAATTGGGTGATCAGTTGGGACACGGCTGGACGTATCATCCAGTCATA
TGTGTTGGCACGGACGATCTTTCCTTCAACAATCAACATTACATTGACCA
AGAAACAGATTTGAAATGTTGGTTATCCACCTTGCTGGCAAAATATCCTA
CCGTTTCCTCTGGAATACCTTTCATCCCAGCAGTAAATCAAGTCAAAGAC
CTCCTAAGAATCATTGTGTTTGCAATTCATGCTTCAAAAACAGCACCCAT
TACCACATCAAACTGGGTGGAATATATCTCACAAGCCATCGATACCGTCT
GCACCACTGACAACATACTCTTTTACAGTCAGCGTCAACTTCCCATCATG
AAGACAGACACTTCTGAATTCGATAAGATCATTCTTTTGGCTCCCTACGG
ATGCGGAAAGTCTTTCATCCTTCAGGAGAAAGCAAAGCAATTGAGTGGAA
TGGCGCAATACAAAGGACGTGTTATGTATGCCATTGAGACAAGTGATTTA
GAAACNTCGTAAACAAGATCATTTTTGAACTATCACTTTctctattttga
taaaaaggctGTTATATGTGTTGTTTTTTCAATAACTACTGTTTTGTCTA
TATGCAAAAAAAGgagtttcttcaaaaaatataaaatggcATCACAATTG
AATTTACACCAGAAAATCATTACATTGAAATCGAAGATTATCGATCCTTC
CAAATGCTTACCACAGACGTCATTATACCATCAAATACAAGCAAATGCAC
AATCTACCATTGACAACCAGAACCGAAAGTTCAATCTCGGGAATGGTCAA
CTATTTACTGATCCCATTCTTGCCGCTGATCAGCTTCTCCTTAGAGAata
tgctgattcagcattatTTGACACCAACCGCCACAATCCAATATTCATCC
CTAATGTTTTTCAATCTCACCAATACACGAAAAAGGATTCAACCGTACAT
CTCCTCGACTACGATGTTGATATAAACACTCTCAAGAAATGTTTGGATAA
TTTGAAGAAGGATTCACCAGACTACTGGTTTACAGGAGAACTTCAGGCTT
TCTATGATCTCCAATTAAACAACTCTAGCGGTAATGAAATCAACGCAAAG
GAATTCTCTTATTGGATCTTGAATGTCAAAATCGTGTATCTTTTGATGGA
AGAGATTGGCAATCAACTGATCCAAAGTTCTTCCTCTCGTCAACCAATTC
TTAACAATCTGACTTTACCATCAACAACTGAAGACAGCAAGACGTTCATC
CAAGCTTGTATTCAGGAATTGGCTTCAAAATCACCAGGATCAAAACTGGA
ACAGACTCTCAAAAAGACATTAAAAGACGCTAAAAAAGAAGTCGAAAACT
TGGTAAAACAAAACCAACCATCCCACTCAACAATAAAATGGCTTTTCGGA
TTAGTTTTATCGGAGCTTGGTGAAAAAGGAGAACACTCATTCTTCCATAA
ACTCTATTTCCTCAAAGATGACCCTGTTCTTGAAGATACTGTGATTCTCA
GTTCCATCAATTTTCTCACCAATGTCCAAAAGAAAATGCATCAGGAGATT
GACGTCCTTCTTTTCTCGTGGACCAAAAAATTAATCATAGGCGTTGAAAT
CAAACGGACACTGACTGGAAAAGCTTTTGACCAGTTGAATAAATACCATA
AACTGATAGAGGGAAAATTGGGTGATCAGTTGGGACACGGCTGGACGTAT
CATCCAGTCATATGTGTTGGCACGGACGATCTTTCCTTCAACAATCAACA
TTACATTGACCAAGAAACAGATTTGAAATGTTGGTTATCCACCTTGCTGG
CAAAATATCCTACCGTTTCCTCTGGAATACCTTTCATCCCAGCAGTAAAT
CAAGTCAAAGACCTCCTAAGAATCATTGTGTTTGCAATTCATGCTTCAAA
AACAGCACCCATTACCACATCAAACTGGGTGGAATATATCTCACAAGCCA
TCGATACCGTCTGCACCACTGACAACATACTCTTTTACAGTCAGCGTCAA
CTTCCCATCATGAAGACAGACACTTCTGAATTCGATAAGATCATTCTTTT
GGCTCCCTACGGATGCGGAAAGTCTTTCATCCTTCAGGAGAAAGCAAAGC
AATTGAGTGGAATGGCGCAATACAAAGGACGTGTTATGTATGCCATTGAG
ACAAGTGATTTAGAAACNTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038102-exon-sc0001774-1491911889:4893..5697 | TCONS_00038102-exon-sc0001774-1491911889:4893..5697 | Clytia hemisphaerica | exon |
| TCONS_00038102-exon-sc0001774-1510915933:4893..5697 | TCONS_00038102-exon-sc0001774-1510915933:4893..5697 | Clytia hemisphaerica | exon |
| TCONS_00038102-exon-sc0001774-1575043694:4893..5697 | TCONS_00038102-exon-sc0001774-1575043694:4893..5697 | Clytia hemisphaerica | exon |
| TCONS_00038102-exon-sc0001774-1491911889:6210..7400 | TCONS_00038102-exon-sc0001774-1491911889:6210..7400 | Clytia hemisphaerica | exon |
| TCONS_00038102-exon-sc0001774-1510915933:6210..7400 | TCONS_00038102-exon-sc0001774-1510915933:6210..7400 | Clytia hemisphaerica | exon |
| TCONS_00038102-exon-sc0001774-1575043694:6210..7400 | TCONS_00038102-exon-sc0001774-1575043694:6210..7400 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001774 | supercontig | sc0001774:4893..7400 + |
Blast
The following BLAST results are available for this feature:
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