TCONS_00038101 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038101
Unique NameTCONS_00038101
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038101 ID=TCONS_00038101|Name=TCONS_00038101|organism=Clytia hemisphaerica|type=transcript|length=559bp
GTTCTTCTCACGCACCTCCACCTCCACCACCACGCTCTTATACACCACCA
CCGTCCTCAGCCACACTTCCACCTCCACCgacaccaccaccaccacaacC
CTCAGCCACCCCTCCACCACCGCCTCCTTCCTCAACAAGACCACCTGTTG
ATCCTCCATCTCAATTTGTTGATCCTGAAACTCTTAAAGATAAGATGACT
CAACTTAAGGTTATTTTTAAAGAGCTACCTAAAATTGAATTGTTAGTCAG
ACGGAGATGTATATACATTGATACAATGGAAAAATTAAAGATGCACTGGG
CTGACGAAATTCGTCCTTTCACCGTTAAATTCATTTGGGATGAAGTGTCT
GAAGGAGATGGAGTTTTACGTGAATTTTTTTCGCTTTTCTTTGAAGACGC
CCAAAAACATATTTTGGTAACCGGACAGTCTGGAAAATTCTCATTCTTAC
ATTCCTTTGATCAAATCAGAAATAAGGAGTTTTATATTTATGGGAACTTA
ATTGCAATGGCACTGCTTTCTGATAGTGCTGGTCCAAGATGTTTATTAAG
AGAAGTGGT
Run BLAST on NCBI

protein sequence of TCONS_00038101-protein

>TCONS_00038101-protein ID=TCONS_00038101-protein|Name=TCONS_00038101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
SSHAPPPPPPRSYTPPPSSATLPPPPTPPPPQPSATPPPPPPSSTRPPVD
PPSQFVDPETLKDKMTQLKVIFKELPKIELLVRRRCIYIDTMEKLKMHWA
DEIRPFTVKFIWDEVSEGDGVLREFFSLFFEDAQKHILVTGQSGKFSFLH
SFDQIRNKEFYIYGNLIAMALLSDSAGPRCLLREV
Run BLAST on NCBI

transcript from alignment at sc0001773:30665..31223

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038101 ID=TCONS_00038101|Name=TCONS_00038101|organism=Clytia hemisphaerica|type=transcript|length=559bp|location=Sequence derived from alignment at sc0001773:30665..31223 (Clytia hemisphaerica)
ACCACTTCTCTTAATAAACATCTTGGACCAGCACTATCAGAAAGCAGTGC
CATTGCAATTAAGTTCCCATAAATATAAAACTCCTTATTTCTGATTTGAT
CAAAGGAATGTAAGAATGAGAATTTTCCAGACTGTCCGGTTACCAAAATA
TGTTTTTGGGCGTCTTCAAAGAAAAGCGAAAAAAATTCACGTAAAACTCC
ATCTCCTTCAGACACTTCATCCCAAATGAATTTAACGGTGAAAGGACGAA
TTTCGTCAGCCCAGTGCATCTTTAATTTTTCCATTGTATCAATGTATATA
CATCTCCGTCTGACTAACAATTCAATTTTAGGTAGCTCTTTAAAAATAAC
CTTAAGTTGAGTCATCTTATCTTTAAGAGTTTCAGGATCAACAAATTGAG
ATGGAGGATCAACAGGTGGTCTTGTTGAGGAAGGAGGCGGTGGTGGAGGG
GTGGCTGAGGgttgtggtggtggtggtgtcGGTGGAGGTGGAAGTGTGGC
TGAGGACGGTGGTGGTGTATAAGAGCGTGGTGGTGGAGGTGGAGGTGCGT
GAGAAGAAC

Coding sequence (CDS) from alignment at sc0001773:30665..31223

>TCONS_00038101 ID=TCONS_00038101|Name=TCONS_00038101|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at sc0001773:30665..31223 (Clytia hemisphaerica)
CACTTCTCTTAATAAACATCTTGGACCAGCACTATCAGAAAGCAGTGCCA
TTGCAATTAAGTTCCCATAAATATAAAACTCCTTATTTCTGATTTGATCA
AAGGAATGTAAGAATGAGAATTTTCCAGACTGTCCGGTTACCAAAATATG
TTTTTGGGCGTCTTCAAAGAAAAGCGAAAAAAATTCACGTAAAACTCCAT
CTCCTTCAGACACTTCATCCCAAATGAATTTAACGGTGAAAGGACGAATT
TCGTCAGCCCAGTGCATCTTTAATTTTTCCATTGTATCAATGTATATACA
TCTCCGTCTGACTAACAATTCAATTTTAGGTAGCTCTTTAAAAATAACCT
TAAGTTGAGTCATCTTATCTTTAAGAGTTTCAGGATCAACAAATTGAGAT
GGAGGATCAACAGGTGGTCTTGTTGAGGAAGGAGGCGGTGGTGGAGGGGT
GGCTGAGGgttgtggtggtggtggtgtcGGTGGAGGTGGAAGTGTGGCTG
AGGACGGTGGTGGTGTATAAGAGCGTGGTGGTGGAGGTGGAGGTGCGTGA
GAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022752XLOC_022752Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038101-proteinTCONS_00038101-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038101-exon-sc0001773-1491911889:30665..31223TCONS_00038101-exon-sc0001773-1491911889:30665..31223Clytia hemisphaericaexon
TCONS_00038101-exon-sc0001773-1510915933:30665..31223TCONS_00038101-exon-sc0001773-1510915933:30665..31223Clytia hemisphaericaexon
TCONS_00038101-exon-sc0001773-1575043694:30665..31223TCONS_00038101-exon-sc0001773-1575043694:30665..31223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001773supercontigsc0001773:30665..31223 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0988468	0	0	2.32384	3.78067	4.03994	4.14816	0.597928	1.16385	0.82157	0.202526	0.337073	1.54024	0.0575584	0	0	0	0	0	0.0980054	0.143411	0	0	0.544155	0.971291	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004842 ubiquitin-protein transferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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