TCONS_00038095 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038095
Unique NameTCONS_00038095
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038095 ID=TCONS_00038095|Name=TCONS_00038095|organism=Clytia hemisphaerica|type=transcript|length=286bp
gcatagccatttgcgtactcTTGCGTACATGGGATattcgattttcgaca
ttttcgtACGTATGTACTGTGGACGGCTCCTTTTAGTAATACATTTTAAt
cgattttatttcttttataatataaatttttgaatttttcgtgtAGCATT
GAGGCTCAAATTTGCTAAAATGCATAGCTCGAAGATGGGAAAATTCacca
ttgaaattttgttttgaaaatgggaTGAACGAGACAGGGGGTGGAGTATT
TTGACTTAAACACATTGAAGTAATgatctttaaaaa
Run BLAST on NCBI

transcript from alignment at sc0001772:24534..24819

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038095 ID=TCONS_00038095|Name=TCONS_00038095|organism=Clytia hemisphaerica|type=transcript|length=286bp|location=Sequence derived from alignment at sc0001772:24534..24819 (Clytia hemisphaerica)
tttttaaagatcATTACTTCAATGTGTTTAAGTCAAAATACTCCACCCCC
TGTCTCGTTCAtcccattttcaaaacaaaatttcaatggtGAATTTTCCC
ATCTTCGAGCTATGCATTTTAGCAAATTTGAGCCTCAATGCTacacgaaa
aattcaaaaatttatattataaaagaaataaaatcgaTTAAAATGTATTA
CTAAAAGGAGCCGTCCACAGTACATACGTacgaaaatgtcgaaaatcgaa
tATCCCATGTACGCAAgagtacgcaaatggctatgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022746XLOC_022746Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038095-exon-sc0001772-1491911889:24534..24819TCONS_00038095-exon-sc0001772-1491911889:24534..24819Clytia hemisphaericaexon
TCONS_00038095-exon-sc0001772-1510915933:24534..24819TCONS_00038095-exon-sc0001772-1510915933:24534..24819Clytia hemisphaericaexon
TCONS_00038095-exon-sc0001772-1575043694:24534..24819TCONS_00038095-exon-sc0001772-1575043694:24534..24819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001772supercontigsc0001772:24534..24819 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	8.64654	7.32066	3.53283	6.06355	1.92965	0	5.56793	2.44009	2.13211	1.58159	1.30028	2.51172	3.78183	0.352387	0.973684	1.01889	0	0	0	0.477401	1.96685	2.63305	0	0	1.01664	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top