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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038085 ID=TCONS_00038085|Name=TCONS_00038085|organism=Clytia hemisphaerica|type=transcript|length=1086bp
TCCAAATTTGAACTTAATCCATGCACAAGTTGGCGCTTCAGACGATTCTA
AAAAAACACTGcctaaaattgttttgaagcTCACATCTCAGGATGTCGAG
TCTAAGTCTGATGAGTTGTGGCGAAAAGCTGTCATTACCTTGCAAGAAGA
CATGTCTTATTTCATTGGGAGTAAAGAAATAGTTGAAAAACGAAAAGATA
CTTTAGCCAATATGTTATCAAATTTATCAGATTCTCATATGTTTAACTTA
AAGATAACAATGAAACTTTACACCATGATCGAACTTTCTCTCCCAACAAC
GTCCCTTATTTCAGAGGGAAGAAAACTCATGTGGCAAAGATTTTATGGAT
ACCTTAGTTCAAACGAATCTAAAGTTGACTTAACGCATTTGGAGGAAATA
TCGACAGTGGTAAATTTTGATTTACTTACTTACAGGttaacttcaaaact
tttggaatTGCTAATCACCGCCAACATCGAATCATACATAGCTGAGTCAT
CATCAACTACATCCTCTGCATCTAATAATGAAAGAGAGAAAATGGATGAT
CGTGAGCAGAATATTGTGAATTATGTTGCCGGATTTATTGCACACTCAGC
AAAAAAGTACTACAAACGAAAAGGCAGTGAGGGGGAACAATTTATTGCAG
CTATCAAAACATGGAGCACTGGGAAGAAAGCAAAATGTTTTGAGTTCAAA
AACAAATGGATTGACCTCCGGGATCGTGGTGGATTAGTGCATGTTAGTGa
taattgttttttattctttcGGGCTATTGAGTATTCTGTACGTGACGTCT
TCAACCCTGTGACATTAAATAACTATGCTGGtgagaatttgaaagaattg
ATCAAAGAGAGAATTTTCAAACGGAAATATGTAATTTATCGCTGGGATGA
GCTAATGAAAGGTGATGAGCTGGACTCAATTGAAAAAGAGAGTTTGTTTA
AGTTGGTTGTTGTACGATGGATTGACATACGTGGCAAGGCATTTGTCAGA
GCTTGGGTGGATGGGTTAAGACAAAAATACAAGGACAAAGTGTCAGATAA
AGGAGAGCATTCCCATAGAAAGCAATTAAATGCTAA Run BLAST on NCBI protein sequence of TCONS_00038085-protein >TCONS_00038085-protein ID=TCONS_00038085-protein|Name=TCONS_00038085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
PNLNLIHAQVGASDDSKKTLPKIVLKLTSQDVESKSDELWRKAVITLQED
MSYFIGSKEIVEKRKDTLANMLSNLSDSHMFNLKITMKLYTMIELSLPTT
SLISEGRKLMWQRFYGYLSSNESKVDLTHLEEISTVVNFDLLTYRLTSKL
LELLITANIESYIAESSSTTSSASNNEREKMDDREQNIVNYVAGFIAHSA
KKYYKRKGSEGEQFIAAIKTWSTGKKAKCFEFKNKWIDLRDRGGLVHVSD
NCFLFFRAIEYSVRDVFNPVTLNNYAGENLKELIKERIFKRKYVIYRWDE
LMKGDELDSIEKESLFKLVVVRWIDIRGKAFVRAWVDGLRQKYKDKVSDK
GEHSHRKQLNA Run BLAST on NCBI transcript from alignment at sc0001769:20951..22036 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038085 ID=TCONS_00038085|Name=TCONS_00038085|organism=Clytia hemisphaerica|type=transcript|length=1086bp|location=Sequence derived from alignment at sc0001769:20951..22036 (Clytia hemisphaerica)
TTAGCATTTAATTGCTTTCTATGGGAATGCTCTCCTTTATCTGACACTTT
GTCCTTGTATTTTTGTCTTAACCCATCCACCCAAGCTCTGACAAATGCCT
TGCCACGTATGTCAATCCATCGTACAACAACCAACTTAAACAAACTCTCT
TTTTCAATTGAGTCCAGCTCATCACCTTTCATTAGCTCATCCCAGCGATA
AATTACATATTTCCGTTTGAAAATTCTCTCTTTGATcaattctttcaaat
tctcaCCAGCATAGTTATTTAATGTCACAGGGTTGAAGACGTCACGTACA
GAATACTCAATAGCCCgaaagaataaaaaacaattatCACTAACATGCAC
TAATCCACCACGATCCCGGAGGTCAATCCATTTGTTTTTGAACTCAAAAC
ATTTTGCTTTCTTCCCAGTGCTCCATGTTTTGATAGCTGCAATAAATTGT
TCCCCCTCACTGCCTTTTCGTTTGTAGTACTTTTTTGCTGAGTGTGCAAT
AAATCCGGCAACATAATTCACAATATTCTGCTCACGATCATCCATTTTCT
CTCTTTCATTATTAGATGCAGAGGATGTAGTTGATGATGACTCAGCTATG
TATGATTCGATGTTGGCGGTGATTAGCAattccaaaagttttgaagttaa
CCTGTAAGTAAGTAAATCAAAATTTACCACTGTCGATATTTCCTCCAAAT
GCGTTAAGTCAACTTTAGATTCGTTTGAACTAAGGTATCCATAAAATCTT
TGCCACATGAGTTTTCTTCCCTCTGAAATAAGGGACGTTGTTGGGAGAGA
AAGTTCGATCATGGTGTAAAGTTTCATTGTTATCTTTAAGTTAAACATAT
GAGAATCTGATAAATTTGATAACATATTGGCTAAAGTATCTTTTCGTTTT
TCAACTATTTCTTTACTCCCAATGAAATAAGACATGTCTTCTTGCAAGGT
AATGACAGCTTTTCGCCACAACTCATCAGACTTAGACTCGACATCCTGAG
ATGTGAgcttcaaaacaattttaggCAGTGTTTTTTTAGAATCGTCTGAA
GCGCCAACTTGTGCATGGATTAAGTTCAAATTTGGA Coding sequence (CDS) from alignment at sc0001769:20951..22036 >TCONS_00038085 ID=TCONS_00038085|Name=TCONS_00038085|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at sc0001769:20951..22036 (Clytia hemisphaerica)
AGCATTTAATTGCTTTCTATGGGAATGCTCTCCTTTATCTGACACTTTGT
CCTTGTATTTTTGTCTTAACCCATCCACCCAAGCTCTGACAAATGCCTTG
CCACGTATGTCAATCCATCGTACAACAACCAACTTAAACAAACTCTCTTT
TTCAATTGAGTCCAGCTCATCACCTTTCATTAGCTCATCCCAGCGATAAA
TTACATATTTCCGTTTGAAAATTCTCTCTTTGATcaattctttcaaattc
tcaCCAGCATAGTTATTTAATGTCACAGGGTTGAAGACGTCACGTACAGA
ATACTCAATAGCCCgaaagaataaaaaacaattatCACTAACATGCACTA
ATCCACCACGATCCCGGAGGTCAATCCATTTGTTTTTGAACTCAAAACAT
TTTGCTTTCTTCCCAGTGCTCCATGTTTTGATAGCTGCAATAAATTGTTC
CCCCTCACTGCCTTTTCGTTTGTAGTACTTTTTTGCTGAGTGTGCAATAA
ATCCGGCAACATAATTCACAATATTCTGCTCACGATCATCCATTTTCTCT
CTTTCATTATTAGATGCAGAGGATGTAGTTGATGATGACTCAGCTATGTA
TGATTCGATGTTGGCGGTGATTAGCAattccaaaagttttgaagttaaCC
TGTAAGTAAGTAAATCAAAATTTACCACTGTCGATATTTCCTCCAAATGC
GTTAAGTCAACTTTAGATTCGTTTGAACTAAGGTATCCATAAAATCTTTG
CCACATGAGTTTTCTTCCCTCTGAAATAAGGGACGTTGTTGGGAGAGAAA
GTTCGATCATGGTGTAAAGTTTCATTGTTATCTTTAAGTTAAACATATGA
GAATCTGATAAATTTGATAACATATTGGCTAAAGTATCTTTTCGTTTTTC
AACTATTTCTTTACTCCCAATGAAATAAGACATGTCTTCTTGCAAGGTAA
TGACAGCTTTTCGCCACAACTCATCAGACTTAGACTCGACATCCTGAGAT
GTGAgcttcaaaacaattttaggCAGTGTTTTTTTAGAATCGTCTGAAGC
GCCAACTTGTGCATGGATTAAGTTCAAATTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038085-exon-sc0001769-1491911889:20951..22036 | TCONS_00038085-exon-sc0001769-1491911889:20951..22036 | Clytia hemisphaerica | exon |
| TCONS_00038085-exon-sc0001769-1510915933:20951..22036 | TCONS_00038085-exon-sc0001769-1510915933:20951..22036 | Clytia hemisphaerica | exon |
| TCONS_00038085-exon-sc0001769-1575043694:20951..22036 | TCONS_00038085-exon-sc0001769-1575043694:20951..22036 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001769 | supercontig | sc0001769:20951..22036 . |
Blast
The following BLAST results are available for this feature:
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