TCONS_00038083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038083
Unique NameTCONS_00038083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038083 ID=TCONS_00038083|Name=TCONS_00038083|organism=Clytia hemisphaerica|type=transcript|length=286bp
CTGACAACCATTATAGAAAACATATCAATAATCAAAATCTGCTTTGCTTA
ACtcctatttgtttttttttctggctgtTATGCATGCCTACCCGACCGTC
CGTTAGTCACActgataaaaagaaaagttcTAATGAAAGCCAAGGGAAGc
tgcatgtttcttttatttttgtcttaaaaacaGAAGTACTATGACCATAA
AAtaagtgcaaaattttagccctaAAGGTTGAGTGGGTAGCTCACAAGAG
GCTCATCAAGaagtgtccgttagtcacgaaaatcat
Run BLAST on NCBI

transcript from alignment at sc0001769:2232..2517

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038083 ID=TCONS_00038083|Name=TCONS_00038083|organism=Clytia hemisphaerica|type=transcript|length=286bp|location=Sequence derived from alignment at sc0001769:2232..2517 (Clytia hemisphaerica)
atgattttcgtgactaacggacacttCTTGATGAGCCTCTTGTGAGCTAC
CCACTCAACCTTtagggctaaaattttgcacttaTTTTATGGTCATAGTA
CTTCtgtttttaagacaaaaataaaagaaacatgcagCTTCCCTTGGCTT
TCATTAgaacttttctttttatcagTGTGACTAACGGACGGTCGGGTAGG
CATGCATAacagccagaaaaaaaaacaaataggaGTTAAGCAAAGCAGAT
TTTGATTATTGATATGTTTTCTATAATGGTTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022740XLOC_022740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038083-exon-sc0001769-1491911889:2232..2517TCONS_00038083-exon-sc0001769-1491911889:2232..2517Clytia hemisphaericaexon
TCONS_00038083-exon-sc0001769-1510915933:2232..2517TCONS_00038083-exon-sc0001769-1510915933:2232..2517Clytia hemisphaericaexon
TCONS_00038083-exon-sc0001769-1575043694:2232..2517TCONS_00038083-exon-sc0001769-1575043694:2232..2517Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001769supercontigsc0001769:2232..2517 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.62606	6.81839	5.63098	5.59478	12.8338	10.7758	22.9243	23.0978	16.6168	19.9643	17.4613	19.676	20.2426	23.5614	3.9154	2.36558	5.66632	4.41555	4.34767	4.74808	4.64265	8.86453	3.73597	4.5283	25.6257	26.5839	8.95327	14.2597	4.03605	7.48515
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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