TCONS_00038079 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038079
Unique NameTCONS_00038079
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038079 ID=TCONS_00038079|Name=TCONS_00038079|organism=Clytia hemisphaerica|type=transcript|length=465bp
ATCCACTAGCCAATCTGTTGACCTACCAATCCATCGACCTACCAACTCGT
TGACCGATCCATTCATCTATCCCACCCACCAATTCATTGAGTAACCATCA
TTCCCCCGCCGACCTATCAATCCAAACGATCCATTGCCATTGGCCTATCC
ATCAACTAACAAACCCATATACCTACCAATCCTGCAATCCATTGAGAATT
CGTCAACCAAAAACAATTAGTTGACCTACCTTCTTCGTTGACCTACTAAA
TTCATCAACCAACCAATCCGCTGACCTATACCCAATCCATTGACTACCAA
TCCCTTAACCAACCAATCTGCTGGCCTATACCCAATCCATTGACTACCAA
TCCCTTAACCAACCAATCCATTGGCCTGCCAGCCAACTAaacagacgatc
tcaatcgaacagaatcgacggtcgaaccagtcaaaccaaatcgaatgcaa
tcgaccgattgaaat
Run BLAST on NCBI

transcript from alignment at sc0001767:41271..41735

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038079 ID=TCONS_00038079|Name=TCONS_00038079|organism=Clytia hemisphaerica|type=transcript|length=465bp|location=Sequence derived from alignment at sc0001767:41271..41735 (Clytia hemisphaerica)
atttcaatcggtcgattgcattcgatttggtttgactggttcgaccgtcg
attctgttcgattgagatcgtctgttTAGTTGGCTGGCAGGCCAATGGAT
TGGTTGGTTAAGGGATTGGTAGTCAATGGATTGGGTATAGGCCAGCAGAT
TGGTTGGTTAAGGGATTGGTAGTCAATGGATTGGGTATAGGTCAGCGGAT
TGGTTGGTTGATGAATTTAGTAGGTCAACGAAGAAGGTAGGTCAACTAAT
TGTTTTTGGTTGACGAATTCTCAATGGATTGCAGGATTGGTAGGTATATG
GGTTTGTTAGTTGATGGATAGGCCAATGGCAATGGATCGTTTGGATTGAT
AGGTCGGCGGGGGAATGATGGTTACTCAATGAATTGGTGGGTGGGATAGA
TGAATGGATCGGTCAACGAGTTGGTAGGTCGATGGATTGGTAGGTCAACA
GATTGGCTAGTGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022736XLOC_022736Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038079-exon-sc0001767-1491911889:41271..41735TCONS_00038079-exon-sc0001767-1491911889:41271..41735Clytia hemisphaericaexon
TCONS_00038079-exon-sc0001767-1510915933:41271..41735TCONS_00038079-exon-sc0001767-1510915933:41271..41735Clytia hemisphaericaexon
TCONS_00038079-exon-sc0001767-1575043694:41271..41735TCONS_00038079-exon-sc0001767-1575043694:41271..41735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001767supercontigsc0001767:41271..41735 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26568	1.15647	2.27352	1.41327	2.18444	2.21302	3.6857	4.66405	2.65037	2.32393	2.61684	3.92317	4.73614	6.1887	5.83457	6.41191	8.09157	10.4898	5.02474	6.48305	9.07614	6.59216	3.12191	4.21209	0	1.38371	6.28159	5.59127	4.8664	4.46296
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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