TCONS_00038077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038077
Unique NameTCONS_00038077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038077 ID=TCONS_00038077|Name=TCONS_00038077|organism=Clytia hemisphaerica|type=transcript|length=1350bp
NNCGATGATCAATCGACCTACAACAATGATCTCCATATCATAATGACCAA
TCCATATCATCCTGCTAACTAGCGCACTAGCACTAGCTAAAGCTGGATCC
ATATTATTATATCGATTGGTTGATGATATCAGATGTTCAAATGATTATAT
ACCCACTGATTGATGATCCTTCTgtgatgaaatttgaaaaaaataaaaca
aacaaacctttttcttgCTTATTAGAATCCATAACGAGATAACTAGCAAT
GTGTGTTTGTCAATTTGGATATAAGAGCACAGTCGATTGGCACTGAATGA
AGTATGAGCAGAATACAGGGGAATCTTACGCAACTAGGATACCATTATTA
AAGCGCAAACTAAATGAGGAGGAGTGAGCGCAAGGCGGCGGAAacggcac
ttaaaaatcacggaTAATCATTGATTTAAGACTCTTGCGAAATTAATGAT
TATCGTTGATTTAACGGTGATAACGGGTTGAAAGGCCACTTGGCGAGGAC
AATAAAGAAGAAGTGCTGGAACCAGCTCTAAAGAAAAAGTGTCTTGAATC
TGAAGACAACGAAACCATGGAGGTCAAGGAGGAACCTATTAAGAAGCAAA
TCATCCAAGAATTAGAATCTAACAAAGAAAATGTTGCGAATAAAAACGAA
GtTATGGAAACAGACGAAATCAATATAGATTCACTACTTACAAAAGATGT
TGaaaaagaaacttcaaaagataatgaaatgCTTCAAGATTCTCCAGAAT
TCTAATCATTCATTCTTGAAGTTAGTTTTATCAAAGGATTGATACCTGGC
AAATAAGTTCAACTAGTAAAGTCTTTACGAATAGAGAGGCTGTCATCGTA
ACGttacaattgattttgatagtcaaaaagaagaagtgACACTTGAGCAT
AAAGTTGTTAGTGGAATTCCACCGAGCTGGAATTTCCATGTAGAATTGCC
NAGCATAAAGTTGTTAGTGGAATTCCACCGAGCTGGAATTTCCATGTAGA
ATTGCCACACTCGAGTGCAAAATTGCTGCATTGATTGGTTCTCTATTCTG
GACATTAATTCTGGACATAATCGTTAATTAACGTTTCAATTTTCTCCATT
TCTTAAAAATGgttattcttataaacaaaactctTGATCAGTGTTTAAAT
AGGTCATGCAGGGTTTATAAAATTTGAGTTTATATCAGTGATGGTTTAGC
tgtgttttttaaatttattgtcAATTTTAAATTTTAATGTTATTCCCAAA
AATATTTATTTATGACTATAAATTAATGAAATTGTGTACATAGTTTTATT
GAATTTATTTATATTATTGTTATTGTTAATATGATTATTACAGTTCGCGA
Run BLAST on NCBI

transcript from alignment at sc0001767:37260..39827-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038077 ID=TCONS_00038077|Name=TCONS_00038077|organism=Clytia hemisphaerica|type=transcript|length=2568bp|location=Sequence derived from alignment at sc0001767:37260..39827- (Clytia hemisphaerica)
NNCGATGATCAATCGACCTACAACAATGATCTCCATATCATAATGACCAA
TCCATATCATCCTGCTAACTAGCGCACTAGCACTAGCTAAAGCTGGATCC
ATATTATTATATCGATTGGTTGATGATATCAGATGTTCAAATGATTATAT
ACCCACTGATTGATGATCCTTCTGTGATGAAATTTGAAAAAAATAAAACA
AACAAACCTTTTTCTTGCTTATTAGAATCCATAACGAGATAACTAGCAAT
GTGTGTTTGTCAATTTGGATATAAGAGCACAGTCGATTGGCACTGAATGA
AGTATGAGCAGAATACAGGGGAATCTTACGCAACTAGGATACCATTATTA
AAGCGCAAACTAAATGAGGAGGAGTGAGCGCAAGGCGGCGGAAACGGCAC
TTAAAAATCACGGATAATCATTGATTTAAGACTCTTGCGAAATTAATGAT
TATCGTTGATTTAACGGTGATAACGGGTTGAAAGGCCACTTGGCGAGGAC
AATAAAGAAGAAGTGCTGGAACCAGCTCTAAAGAAAAAGTGTCTTGAATC
TGAAGGTATTTTAACTTGGTATTTTATACTTTGTCTTTATATTAGTAAAA
ACATTTTCAATTTTGTCAGGGCGAAAAGTGTTCTACAATTTAAAAAAGGG
ACTTGTGTCGAGATTTAATGTTTTAAGCGCCATTTTTTTAGTTTAGGTAT
AAACTTATTTCTTTTTTTATGATTTTTGTTGGCGAAAATTTTTGTTTTCG
CCAACAAAAATCATAAAAAAAGAAATAAGTTTATACCTAAACTACCATTT
TTTAACACACCCCCTAAAATTTACTTTTGTTTCTGTTACTAGACAACGAA
ACCATGGAGGTCAAGGAGGAACCTATTAAGAAGCAAATCATCCAAGAATT
AGAATCTAACAAAGAAAATGTTGCGAATAAAAACGAAGGTTTGTACCTAC
ATGTTTTTTATAAACATACAAAAATTCGGAAACAGACTTGGAGATGGCTG
AAAAATGCTTTTAAGGGTGCTCATATCCCAAGCAAAACTTGAGGGAAATA
CCAAAAATCCTTAAAATCCCAACCAAAAACAACCAAAATAAAAAAAACAA
CGTATTTTTCATAGACTCAAGGCAATGCTTACCATATGCTTACATCTTTG
TTATATCTGAACCTAGATATGCTTATAAGTGCAATGCTTATAAAAAAAAA
TCAATCTTAATTCATGCCTTTCAATCAAAAGGTGAAGTAAGCACTTTCGA
TCTACACTTTTTTTCTAAGAACAAACCATATGAACAGAATACGGCTTTGA
GTGCCAAAATATTAACATCAAGTTTAGAGCATTTTAAGGCTTTGTGGACT
TTAAAACACTCGATTTCTTTGGAGAATGGACAAAAATACTCAAAAACTGG
TGAAAATGAGAACATTTTAAGAATAGTTTTAAGCTTAAAACTTAAAAGGT
CAAGAACATCCAAAGGCTTAAAAAAATTGGATTTTCTTATTAAAAACGTG
TTTTTGAAGAAATATTTCATTCCAACTTGTTTTGAAAAGATTGCCCTATC
CAAAGGTGCAGTAAAAAGTGAAAGTTATTTACTTGTTTTTATATAGGCTT
TGTGGACTTTTAAACACTCGATTCTTTGGAAAATGGACAAAGACATTCAA
AAAACTTTTTAAGAACAGTTTTAAGCTTAAAACTCAAAAGGTTAGGAACT
TCCAAAGGCTTAAAAGAAATTGGATTTTCTTATTAAAAACGTGTTTTGAA
GAAATATTTCATTCCAACTTGTTTTTGAAACACTTAGGTGCAGTAAAGTT
ATGTGAAAGTTATTTACTTATTTTTATATAGACTTGTGCTTGAAGGTGTG
ACTTTATCTTCATTTTCAGTTATGGAAACAGACGAAATCAATATAGATTC
ACTACTTACAAAAGATGTTGAAAAAGAAACTTCAAAAGATAATGAAATGC
TTCAAGATTCTCCAGAATTCTAATCATTCATTCTTGAAGTTAGTTTTATC
AAAGGATTGATACCTGGCAAATAAGTTCAACTAGTAAAGTCTTTACGAAT
AGAGAGGCTGTCATCGTAACGTTACAATTGATTTTGATAGTCAAAAAGAA
GAAGTGACACTTGAGCATAAAGTTGTTAGTGGAATTCCACCGAGCTGGAA
TTTCCATGTAGAATTGCCNAGCATAAAGTTGTTAGTGGAATTCCACCGAG
CTGGAATTTCCATGTAGAATTGCCACACTCGAGTGCAAAATTGCTGCATT
GATTGGTTCTCTATTCTGGACATTAATTCTGGACATAATCGTTAATTAAC
GTTTCAATTTTCTCCATTTCTTAAAAATGGTTATTCTTATAAACAAAACT
CTTGATCAGTGTTTAAATAGGTCATGCAGGGTTTATAAAATTTGAGTTTA
TATCAGTGATGGTTTAGCTGTGTTTTTTAAATTTATTGTCAATTTTAAAT
TTTAATGTTATTCCCAAAAATATTTATTTATGACTATAAATTAATGAAAT
TGTGTACATAGTTTTATTGAATTTATTTATATTATTGTTATTGTTAATAT
GATTATTACAGTTCGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022734XLOC_022734Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038077-exon-sc0001767-1575043694:39273..39827TCONS_00038077-exon-sc0001767-1575043694:39273..39827Clytia hemisphaericaexon
TCONS_00038077-exon-sc0001767-1575043694:38890..38985TCONS_00038077-exon-sc0001767-1575043694:38890..38985Clytia hemisphaericaexon
TCONS_00038077-exon-sc0001767-1575043694:37260..37958TCONS_00038077-exon-sc0001767-1575043694:37260..37958Clytia hemisphaericaexon
TCONS_00038077-exon-sc0001767-1510915933:39273..39827TCONS_00038077-exon-sc0001767-1510915933:39273..39827Clytia hemisphaericaexon
TCONS_00038077-exon-sc0001767-1510915933:38890..38985TCONS_00038077-exon-sc0001767-1510915933:38890..38985Clytia hemisphaericaexon
TCONS_00038077-exon-sc0001767-1510915933:37260..37958TCONS_00038077-exon-sc0001767-1510915933:37260..37958Clytia hemisphaericaexon
TCONS_00038077-exon-sc0001767-1491911889:39273..39827TCONS_00038077-exon-sc0001767-1491911889:39273..39827Clytia hemisphaericaexon
TCONS_00038077-exon-sc0001767-1491911889:38890..38985TCONS_00038077-exon-sc0001767-1491911889:38890..38985Clytia hemisphaericaexon
TCONS_00038077-exon-sc0001767-1491911889:37260..37958TCONS_00038077-exon-sc0001767-1491911889:37260..37958Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001767supercontigsc0001767:37260..39827 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17742	1.09267	0.317264	0.161437	1.87014	0.963956	1.8165	2.01394	1.35042	1.30532	1.95495	1.65868	1.35545	1.06555	1.152	1.95489	2.10381	1.86794	0.881675	0.930787	1.93391	1.2847	1.85928	1.641	7.10691	9.16873	0.926426	0.441179	1.4219	1.08957
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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