TCONS_00038074 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038074
Unique NameTCONS_00038074
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038074 ID=TCONS_00038074|Name=TCONS_00038074|organism=Clytia hemisphaerica|type=transcript|length=641bp
TCGCGAACTGTAATAATCATATTAACAATAACAATAATATAAATAAATTC
AATAAAACTATGTACACAATTTCATTAATTTATAGTCATAAATAAATATT
TTTGGGAATAACATTAAAATTTAAAATTgacaataaatttaaaaaacaca
GCTAAACCATCACTGATATAAACTCAAATTTTATAAACCCTGCATGACCT
ATTTAAACACTGATCAagagttttgtttataagaataacCATTTTTAAGA
AATGGAGAAAATTGAAACGTTAATTAACGATTATGTCCAGAATTAATGTC
CAGAATAGAGAACCAATCAATGCAGCAATTTTGCACTCGAGTGTGGCAAT
TCTACATGGAAATTCCAGCTCGGTGGAATTCCACTAACAACTTTATGCTC
AAGTGTcacttcttctttttgactatcaaaatcaattgtaaCGTTACGAT
GACAGCCTCTCTATTCGTAAAGACTTTACTAGTTGAACTTATTTGCCAGG
TATCAATCCTTTGATAAAACTAACTTCAAGAATGAATGATTAGAATTCTG
GAGAATCTTGAAGcatttcattatcttttgaagtttctttttCAACATCT
TTTGTAAGTAGTGAATCTATATTGATTTCGTCTGTTTCCAT
Run BLAST on NCBI

transcript from alignment at sc0001767:37260..37956+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038074 ID=TCONS_00038074|Name=TCONS_00038074|organism=Clytia hemisphaerica|type=transcript|length=697bp|location=Sequence derived from alignment at sc0001767:37260..37956+ (Clytia hemisphaerica)
TCGCGAACTGTAATAATCATATTAACAATAACAATAATATAAATAAATTC
AATAAAACTATGTACACAATTTCATTAATTTATAGTCATAAATAAATATT
TTTGGGAATAACATTAAAATTTAAAATTgacaataaatttaaaaaacaca
GCTAAACCATCACTGATATAAACTCAAATTTTATAAACCCTGCATGACCT
ATTTAAACACTGATCAagagttttgtttataagaataacCATTTTTAAGA
AATGGAGAAAATTGAAACGTTAATTAACGATTATGTCCAGAATTAATGTC
CAGAATAGAGAACCAATCAATGCAGCAATTTTGCACTCGAGTGTGGCAAT
TCTACATGGAAATTCCAGCTCGGTGGAATTCCACTAACAACTTTATGCTN
GGCAATTCTACATGGAAATTCCAGCTCGGTGGAATTCCACTAACAACTTT
ATGCTCAAGTGTcacttcttctttttgactatcaaaatcaattgtaaCGT
TACGATGACAGCCTCTCTATTCGTAAAGACTTTACTAGTTGAACTTATTT
GCCAGGTATCAATCCTTTGATAAAACTAACTTCAAGAATGAATGATTAGA
ATTCTGGAGAATCTTGAAGcatttcattatcttttgaagtttctttttCA
ACATCTTTTGTAAGTAGTGAATCTATATTGATTTCGTCTGTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022732XLOC_022732Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038074-exon-sc0001767-1491911889:37260..37604TCONS_00038074-exon-sc0001767-1491911889:37260..37604Clytia hemisphaericaexon
TCONS_00038074-exon-sc0001767-1510915933:37260..37604TCONS_00038074-exon-sc0001767-1510915933:37260..37604Clytia hemisphaericaexon
TCONS_00038074-exon-sc0001767-1575043694:37260..37604TCONS_00038074-exon-sc0001767-1575043694:37260..37604Clytia hemisphaericaexon
TCONS_00038074-exon-sc0001767-1491911889:37661..37956TCONS_00038074-exon-sc0001767-1491911889:37661..37956Clytia hemisphaericaexon
TCONS_00038074-exon-sc0001767-1510915933:37661..37956TCONS_00038074-exon-sc0001767-1510915933:37661..37956Clytia hemisphaericaexon
TCONS_00038074-exon-sc0001767-1575043694:37661..37956TCONS_00038074-exon-sc0001767-1575043694:37661..37956Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001767supercontigsc0001767:37260..37956 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.15567e-05	0	0	0	0	0	0	0	0	0.0662185	0	0.0672585	0	0	0	0	0	0	0	0	0	0	0	0	0.765738	0.224875	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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