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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038070 ID=TCONS_00038070|Name=TCONS_00038070|organism=Clytia hemisphaerica|type=transcript|length=1029bp
CCGTTTTTCTGGCTGGACTGAAGTCGCGGACGCTAAACAATCCAACGCCA
CCGCCATACGCAACACCTTGCGTCGATACTTTGAGACGTTTGGTGTACCT
GAGGAGATTTCATCGGACGGGGGCCCACCATTCAATTCTACCGAATACGC
CACTTTTCTTAAAGACTGGAGCGTAACCCATCGTCTTTCATCCGCCTATT
ACCCCCAAAGCAACGGGAGAGCTGAAGCAGCCGTTAAGACCATTAAGCGT
ATCCTCACCACCAATGTCAGCAGCACTAGATCGCTGGACACTGATGCCGT
TGCCAAGGCTCTACTTCTCCACAGGAACACGCCATCACCCGATATCGGTG
CATCCCCTGCAGAGCTCCTTTTTGGCAGACCACTTAACGACCACCTACCA
AAACCTGTTCCGCCACGGAAAATTTGGTCGGAATTAGCAGACGCACGCGA
AGAAGCCTTTGCAAAACGCCGTGCCCAAGCATTGAAACCACCAGGAGATC
TGTCCCCGCACACACCTTTAGATGTGGGGAGCCCCGTTGCCATCCAGAAT
CAAAATGGTCAACATCCTCTTCGATGGGATCGCACAGGCATCATTTCTGA
AAGGCTCCCTCATGATCAATATCGTGTACTGGTCGACAGTAGTAGACGAA
CGACCCTCAGAAATCGTCGCTTTCTTCGTCCTGTTACTGAACAAACTCGG
AACGTGATAAACGAAGAACCAGAAACTGTTACTGTTACATCAAGGACTGT
AATACCCGCAGATCGGCAAAACGAAGAAGCTGATCACGCATTACCGTTTG
AGCCTGTTGTTATTCAAGACACTGTCGTGCTACCGACCGTCACTGAAACA
AACACTGACGATCAAATTGCTTTGAGACGATCTACGAGAACACGAAAGTT
ACCTTCTAAATTTAAAAACTAGGAAAAGGGCGTGTATAGTCCCGCATGTA
TATAGAACCTTATATCTCCATCATAGTTTATATTTAGGGTAGTGTGACAC
TGGAAAATATATCATTAGCATACAACtta Run BLAST on NCBI protein sequence of TCONS_00038070-protein >TCONS_00038070-protein ID=TCONS_00038070-protein|Name=TCONS_00038070-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
RFSGWTEVADAKQSNATAIRNTLRRYFETFGVPEEISSDGGPPFNSTEYA
TFLKDWSVTHRLSSAYYPQSNGRAEAAVKTIKRILTTNVSSTRSLDTDAV
AKALLLHRNTPSPDIGASPAELLFGRPLNDHLPKPVPPRKIWSELADARE
EAFAKRRAQALKPPGDLSPHTPLDVGSPVAIQNQNGQHPLRWDRTGIISE
RLPHDQYRVLVDSSRRTTLRNRRFLRPVTEQTRNVINEEPETVTVTSRTV
IPADRQNEEADHALPFEPVVIQDTVVLPTVTETNTDDQIALRRSTRTRKL
PSKFKN Run BLAST on NCBI transcript from alignment at sc0001766:37247..38275 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038070 ID=TCONS_00038070|Name=TCONS_00038070|organism=Clytia hemisphaerica|type=transcript|length=1029bp|location=Sequence derived from alignment at sc0001766:37247..38275 (Clytia hemisphaerica)
taaGTTGTATGCTAATGATATATTTTCCAGTGTCACACTACCCTAAATAT
AAACTATGATGGAGATATAAGGTTCTATATACATGCGGGACTATACACGC
CCTTTTCCTAGTTTTTAAATTTAGAAGGTAACTTTCGTGTTCTCGTAGAT
CGTCTCAAAGCAATTTGATCGTCAGTGTTTGTTTCAGTGACGGTCGGTAG
CACGACAGTGTCTTGAATAACAACAGGCTCAAACGGTAATGCGTGATCAG
CTTCTTCGTTTTGCCGATCTGCGGGTATTACAGTCCTTGATGTAACAGTA
ACAGTTTCTGGTTCTTCGTTTATCACGTTCCGAGTTTGTTCAGTAACAGG
ACGAAGAAAGCGACGATTTCTGAGGGTCGTTCGTCTACTACTGTCGACCA
GTACACGATATTGATCATGAGGGAGCCTTTCAGAAATGATGCCTGTGCGA
TCCCATCGAAGAGGATGTTGACCATTTTGATTCTGGATGGCAACGGGGCT
CCCCACATCTAAAGGTGTGTGCGGGGACAGATCTCCTGGTGGTTTCAATG
CTTGGGCACGGCGTTTTGCAAAGGCTTCTTCGCGTGCGTCTGCTAATTCC
GACCAAATTTTCCGTGGCGGAACAGGTTTTGGTAGGTGGTCGTTAAGTGG
TCTGCCAAAAAGGAGCTCTGCAGGGGATGCACCGATATCGGGTGATGGCG
TGTTCCTGTGGAGAAGTAGAGCCTTGGCAACGGCATCAGTGTCCAGCGAT
CTAGTGCTGCTGACATTGGTGGTGAGGATACGCTTAATGGTCTTAACGGC
TGCTTCAGCTCTCCCGTTGCTTTGGGGGTAATAGGCGGATGAAAGACGAT
GGGTTACGCTCCAGTCTTTAAGAAAAGTGGCGTATTCGGTAGAATTGAAT
GGTGGGCCCCCGTCCGATGAAATCTCCTCAGGTACACCAAACGTCTCAAA
GTATCGACGCAAGGTGTTGCGTATGGCGGTGGCGTTGGATTGTTTAGCGT
CCGCGACTTCAGTCCAGCCAGAAAAACGG Coding sequence (CDS) from alignment at sc0001766:37247..38275 >TCONS_00038070 ID=TCONS_00038070|Name=TCONS_00038070|organism=Clytia hemisphaerica|type=CDS|length=921bp|location=Sequence derived from alignment at sc0001766:37247..38275 (Clytia hemisphaerica)
CTAGTTTTTAAATTTAGAAGGTAACTTTCGTGTTCTCGTAGATCGTCTCA
AAGCAATTTGATCGTCAGTGTTTGTTTCAGTGACGGTCGGTAGCACGACA
GTGTCTTGAATAACAACAGGCTCAAACGGTAATGCGTGATCAGCTTCTTC
GTTTTGCCGATCTGCGGGTATTACAGTCCTTGATGTAACAGTAACAGTTT
CTGGTTCTTCGTTTATCACGTTCCGAGTTTGTTCAGTAACAGGACGAAGA
AAGCGACGATTTCTGAGGGTCGTTCGTCTACTACTGTCGACCAGTACACG
ATATTGATCATGAGGGAGCCTTTCAGAAATGATGCCTGTGCGATCCCATC
GAAGAGGATGTTGACCATTTTGATTCTGGATGGCAACGGGGCTCCCCACA
TCTAAAGGTGTGTGCGGGGACAGATCTCCTGGTGGTTTCAATGCTTGGGC
ACGGCGTTTTGCAAAGGCTTCTTCGCGTGCGTCTGCTAATTCCGACCAAA
TTTTCCGTGGCGGAACAGGTTTTGGTAGGTGGTCGTTAAGTGGTCTGCCA
AAAAGGAGCTCTGCAGGGGATGCACCGATATCGGGTGATGGCGTGTTCCT
GTGGAGAAGTAGAGCCTTGGCAACGGCATCAGTGTCCAGCGATCTAGTGC
TGCTGACATTGGTGGTGAGGATACGCTTAATGGTCTTAACGGCTGCTTCA
GCTCTCCCGTTGCTTTGGGGGTAATAGGCGGATGAAAGACGATGGGTTAC
GCTCCAGTCTTTAAGAAAAGTGGCGTATTCGGTAGAATTGAATGGTGGGC
CCCCGTCCGATGAAATCTCCTCAGGTACACCAAACGTCTCAAAGTATCGA
CGCAAGGTGTTGCGTATGGCGGTGGCGTTGGATTGTTTAGCGTCCGCGAC
TTCAGTCCAGCCAGAAAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038070-exon-sc0001766-1491911889:37247..38275 | TCONS_00038070-exon-sc0001766-1491911889:37247..38275 | Clytia hemisphaerica | exon |
| TCONS_00038070-exon-sc0001766-1510915933:37247..38275 | TCONS_00038070-exon-sc0001766-1510915933:37247..38275 | Clytia hemisphaerica | exon |
| TCONS_00038070-exon-sc0001766-1575043694:37247..38275 | TCONS_00038070-exon-sc0001766-1575043694:37247..38275 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001766 | supercontig | sc0001766:37247..38275 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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