TCONS_00038068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038068
Unique NameTCONS_00038068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038068 ID=TCONS_00038068|Name=TCONS_00038068|organism=Clytia hemisphaerica|type=transcript|length=414bp
tcacggtGATTACTTCCTGTGAAACACGAAACGTCATCCATTACTGATAA
ATGTAACTGCATAAATTAAACGAATTTTTTCATGTACTCGGAACTTGCTT
TATACGAGACGCACTGCATTATTGTCTGaagaatatattcaattcatgat
gttcatgatgtaatctttacgCATTAAACAATAGAGagaagaaaaacttt
gaaaacatttGGTCACCATTATTAGTGGCAGAATATCAGACGCTCTAAGG
CATTTTATATTGAAACCGGGAGTTCAATAAAAAGAAACCTTCAAGGGCTA
CATAAACTACAGCAATATATTGTCAAGCAATATACAAGCAATATATTGGT
GAGTGCCGCCAATATATTGTAAAGTGGtcacaatatattgaaaaggtgtc
agCAATATATTGCC
Run BLAST on NCBI

transcript from alignment at sc0001766:23777..24190

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038068 ID=TCONS_00038068|Name=TCONS_00038068|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at sc0001766:23777..24190 (Clytia hemisphaerica)
GGCAATATATTGctgacaccttttcaatatattgtgaCCACTTTACAATA
TATTGGCGGCACTCACCAATATATTGCTTGTATATTGCTTGACAATATAT
TGCTGTAGTTTATGTAGCCCTTGAAGGTTTCTTTTTATTGAACTCCCGGT
TTCAATATAAAATGCCTTAGAGCGTCTGATATTCTGCCACTAATAATGGT
GACCaaatgttttcaaagtttttcttctCTCTATTGTTTAATGcgtaaag
attacatcatgaacatcatgaattgaatatattcttCAGACAATAATGCA
GTGCGTCTCGTATAAAGCAAGTTCCGAGTACATGAAAAAATTCGTTTAAT
TTATGCAGTTACATTTATCAGTAATGGATGACGTTTCGTGTTTCACAGGA
AGTAATCaccgtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022727XLOC_022727Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038068-exon-sc0001766-1491911889:23777..24190TCONS_00038068-exon-sc0001766-1491911889:23777..24190Clytia hemisphaericaexon
TCONS_00038068-exon-sc0001766-1510915933:23777..24190TCONS_00038068-exon-sc0001766-1510915933:23777..24190Clytia hemisphaericaexon
TCONS_00038068-exon-sc0001766-1575043694:23777..24190TCONS_00038068-exon-sc0001766-1575043694:23777..24190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001766supercontigsc0001766:23777..24190 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.142023	0	0	0.157323	1.86707	1.65981	2.66998	3.74941	1.75003	1.14696	1.57802	0.250581	0.575491	0.239061	0.393082	0.252787	0	0	0	0.19251	0	0.489695	0	0.180401	0.185809	1.32664	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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