TCONS_00038067 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038067
Unique NameTCONS_00038067
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length868

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038067 ID=TCONS_00038067|Name=TCONS_00038067|organism=Clytia hemisphaerica|type=transcript|length=868bp
ATTTTGTCAACAAAAAGTTTCTGTGATGATATTGGCTGCGCAAATTCCCG
CAAAAATATTCTTGCTTAGAAAAGGTTatgaaagattttcaaagtgaaag
attttcaaagtagaaaatttaaaaaccctTCAGTCAAAAGTTGCTATTTT
TGCGGAACGTGCGTTTGAGCGCGcgcagcgatgcattgtgggattgtttc
gagtgtattacaaataATATCTCTTAGGaactcctcgagggaattctact
GTAATACACATCTCTTTTCATAAGAAAGACTTTGTTGTagtttgagatca
agcaaacgCAAACATTACCAGATTCCCATCAAGATTCAATATTAATATTA
TGTAGCTACGTATAATATAATGCAACACAAGAAGGGGGacaaattgtgaa
tgttttggtggtacatgggatgttttgtgtgtgacatgtgatgcttaatg
acattaacttttacatgttaaggcagcaatcagaaaatacacttccattt
tatttttaatcttttcaaGTCACTagtagtagaaaatttcaaattcactg
ctgctggtggtcattattcagtttaaaacactttaaataatttccaaata
aaGTAAGTTCTTTCAcagcattttcctcaaaattcttGGACTTGTATACT
GGCAAAATGAAATGCATCCGAAGAAGTTCGTGATCGCTGCCTTATAATAT
TGGAATGTTTCAAGgggtttgaagtcattgcatgatTTGCTTTTTTCATT
GCATGAATGTATGAATACTAGTAGTGAATTATATtagtgatatttttgta
aaaatggattttattcTTTACCACTTTTAGTTATGACATCCTAAACTATC
AAAAAGTCCATATTACAA
Run BLAST on NCBI

transcript from alignment at sc0001766:12809..13676

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038067 ID=TCONS_00038067|Name=TCONS_00038067|organism=Clytia hemisphaerica|type=transcript|length=868bp|location=Sequence derived from alignment at sc0001766:12809..13676 (Clytia hemisphaerica)
TTGTAATATGGACTTTTTGATAGTTTAGGATGTCATAACTAAAAGTGGTA
AAgaataaaatccatttttacaaaaatatcactaATATAATTCACTACTA
GTATTCATACATTCATGCAATGAAAAAAGCAAatcatgcaatgacttcaa
acccCTTGAAACATTCCAATATTATAAGGCAGCGATCACGAACTTCTTCG
GATGCATTTCATTTTGCCAGTATACAAGTCCaagaattttgaggaaaatg
ctgTGAAAGAACTTACtttatttggaaattatttaaagtgttttaaactg
aataatgaccaccagcagcagtgaatttgaaattttctactactAGTGAC
ttgaaaagattaaaaataaaatggaagtgtattttctgattgctgcctta
acatgtaaaagttaatgtcattaagcatcacatgtcacacacaaaacatc
ccatgtaccaccaaaacattcacaatttgtCCCCCTTCTTGTGTTGCATT
ATATTATACGTAGCTACATAATATTAATATTGAATCTTGATGGGAATCTG
GTAATGTTTGcgtttgcttgatctcaaactACAACAAAGTCTTTCTTATG
AAAAGAGATGTGTATTACagtagaattccctcgaggagttCCTAAGAGAT
ATtatttgtaatacactcgaaacaatcccacaatgcatcgctgcgCGCGC
TCAAACGCACGTTCCGCAAAAATAGCAACTTTTGACTGAagggtttttaa
attttctactttgaaaatctttcactttgaaaatctttcatAACCTTTTC
TAAGCAAGAATATTTTTGCGGGAATTTGCGCAGCCAATATCATCACAGAA
ACTTTTTGTTGACAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022726XLOC_022726Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038067-exon-sc0001766-1491911889:12809..13676TCONS_00038067-exon-sc0001766-1491911889:12809..13676Clytia hemisphaericaexon
TCONS_00038067-exon-sc0001766-1510915933:12809..13676TCONS_00038067-exon-sc0001766-1510915933:12809..13676Clytia hemisphaericaexon
TCONS_00038067-exon-sc0001766-1575043694:12809..13676TCONS_00038067-exon-sc0001766-1575043694:12809..13676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001766supercontigsc0001766:12809..13676 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.02041	1.72232	1.38971	1.64622	22.9782	14.386	12.7946	15.269	3.9333	5.17927	5.16591	5.70313	3.30487	3.42549	3.3926	2.90264	3.78189	3.7221	5.82801	7.77283	7.86421	7.72093	3.71532	5.00812	7.78974	6.76641	5.52082	4.06648	3.33689	3.79308
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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