TCONS_00038066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038066
Unique NameTCONS_00038066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038066 ID=TCONS_00038066|Name=TCONS_00038066|organism=Clytia hemisphaerica|type=transcript|length=342bp
GTCGGATTCCAACGTCTCATGGAATCAACATATTTTGAAAAGGTTCACCA
TCTTGTTAGAGTCGAACAACTTGCAGataCTGCAAAACAACGGACGGTGC
TACGCAAGAAGGCCTTTGCATGCAATTCAATTATCAAAACGCTTGTGACA
AGCTACAACAGTATCGCTATCGATCTAGTTTTAGTTGACGATGTACTGCG
TGGAGTTTTTGAATGGAAAGTGAAACTTTTCACGCAAGCTTATCCCCCTG
AATTTACAGATGTTACAAAAAGAGCTGTCCTAGAGtcctttacaaaaaaa
aagaggtGTGAAGAAGAATTGGTGATATTGGAACAGGATATG
Run BLAST on NCBI

protein sequence of TCONS_00038066-protein

>TCONS_00038066-protein ID=TCONS_00038066-protein|Name=TCONS_00038066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
VGFQRLMESTYFEKVHHLVRVEQLADTAKQRTVLRKKAFACNSIIKTLVT
SYNSIAIDLVLVDDVLRGVFEWKVKLFTQAYPPEFTDVTKRAVLESFTKK
KRCEEELVILEQDM
Run BLAST on NCBI

transcript from alignment at sc0001766:30425..31150-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038066 ID=TCONS_00038066|Name=TCONS_00038066|organism=Clytia hemisphaerica|type=transcript|length=726bp|location=Sequence derived from alignment at sc0001766:30425..31150- (Clytia hemisphaerica)
GTCGGATTCCAACGTCTCATGGAATCAACATATTTTGAAAAGGTTCACCA
TCTTGTTAGAGTCGAACAACTTGCAGGTTAGTCTTCTCAGTTTTAAACTG
GTGCGTGCTTAAGATAAGTTTTTTTTCAAATCCAAATGAAAAATGAATTT
GTTGATTAGCATTTAGACGAAAGCTTAGAAATGTTCTCGGTTTAAAATGA
TATGGCTATTTTTATTATTTTGGTTATTTTATTATTTTTAGATACTGCAA
AACAACGGACGGTGCTACGCAAGAAGGCCTTTGCATGCAATTCAATTATC
AAAACGCTTGTGACAAGCTACAACAGTATCGCTATCGATCTAGTTTTAGT
TGACGATGTACTGCGTGGAGTTTTTGAATGGAAAGTGAAACTTTTCACGC
AAGCTTATCCCCCTGAATTTACAGGTATGACAATTGGGACAATTGACTTT
AATTCTGTTTAAATTTTTGCCTGAAACAATAGATTCAAAAAACGAAAGGA
GTGTAAAATTGTTTCTTGTATTGTTTCTTTTTGTTGTAGTTTTTTTTTTA
GTTTTCCCATCACAGTTTTATTATTACAGATGGCCAAACAATGCAATATG
TTTTTATCAAAGGCTATATAGATGTACTGTTTTTCAATTATAGATGTTAC
AAAAAGAGCTGTCCTAGAGTCCTTTACAAAAAAAAAGAGGTGTGAAGAAG
AATTGGTGATATTGGAACAGGATATG

Coding sequence (CDS) from alignment at sc0001766:30425..31150-

>TCONS_00038066 ID=TCONS_00038066|Name=TCONS_00038066|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0001766:30425..31150- (Clytia hemisphaerica)
ATGTTACAAAAAGAGCTGTCCTAGAGTCCTTTACAAAAAAAAAGAGGTGT
GAAGAAGAATTGGTGATATTGGAACAGGATATGATACTGCAAAACAACGG
ACGGTGCTACGCAAGAAGGCCTTTGCATGCAATTCAATTATCAAAACGCT
TGTGACAAGCTACAACAGTATCGCTATCGATCTAGTTTTAGTTGACGATG
TACTGCGTGGAGTTTTTGAATGGAAAGTGAAACTTTTCACGCAAGCTTAT
CCCCCTGAATTTACAGGTCGGATTCCAACGTCTCATGGAATCAACATATT
TTGAAAAGGTTCACCATCTTGTTAGAGTCGAACAACTTGCAGATGTTACA
AAAAGAGCTGTCCTAGAGTCCTTTACAAAAAAAAAGAGGTGTGAAGAAGA
ATTGGTGATATTGGAACAGGATATGATACTGCAAAACAACGGACGGTGCT
ACGCAAGAAGGCCTTTGCATGCAATTCAATTATCAAAACGCTTGTGACAA
GCTACAACAGTATCGCTATCGATCTAGTTTTAGTTGACGATGTACTGCGT
GGAGTTTTTGAATGGAAAGTGAAACTTTTCACGCAAGCTTATCCCCCTGA
ATTTACAGGTCGGATTCCAACGTCTCATGGAATCAACATATTTTGAAAAG
GTTCACCATCTTGTTAGAGTCGAACAACTTGCAGATGTTACAAAAAGAGC
TGTCCTAGAGTCCTTTACAAAAAAAAAGAGGTGTGAAGAAGAATTGGTGA
TATTGGAACAGGATATGATACTGCAAAACAACGGACGGTGCTACGCAAGA
AGGCCTTTGCATGCAATTCAATTATCAAAACGCTTGTGACAAGCTACAAC
AGTATCGCTATCGATCTAGTTTTAGTTGACGATGTACTGCGTGGAGTTTT
TGAATGGAAAGTGAAACTTTTCACGCAAGCTTATCCCCCTGAATTTACAG
GTCGGATTCCAACGTCTCATGGAATCAACATATTTTGAAAAGGTTCACCA
TCTTGTTAGAGTCGAACAACTTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022725XLOC_022725Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038066-proteinTCONS_00038066-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038066-exon-sc0001766-1575043694:31075..31150TCONS_00038066-exon-sc0001766-1575043694:31075..31150Clytia hemisphaericaexon
TCONS_00038066-exon-sc0001766-1575043694:30727..30909TCONS_00038066-exon-sc0001766-1575043694:30727..30909Clytia hemisphaericaexon
TCONS_00038066-exon-sc0001766-1575043694:30425..30507TCONS_00038066-exon-sc0001766-1575043694:30425..30507Clytia hemisphaericaexon
TCONS_00038066-exon-sc0001766-1510915933:31075..31150TCONS_00038066-exon-sc0001766-1510915933:31075..31150Clytia hemisphaericaexon
TCONS_00038066-exon-sc0001766-1510915933:30727..30909TCONS_00038066-exon-sc0001766-1510915933:30727..30909Clytia hemisphaericaexon
TCONS_00038066-exon-sc0001766-1510915933:30425..30507TCONS_00038066-exon-sc0001766-1510915933:30425..30507Clytia hemisphaericaexon
TCONS_00038066-exon-sc0001766-1491911889:31075..31150TCONS_00038066-exon-sc0001766-1491911889:31075..31150Clytia hemisphaericaexon
TCONS_00038066-exon-sc0001766-1491911889:30727..30909TCONS_00038066-exon-sc0001766-1491911889:30727..30909Clytia hemisphaericaexon
TCONS_00038066-exon-sc0001766-1491911889:30425..30507TCONS_00038066-exon-sc0001766-1491911889:30425..30507Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001766supercontigsc0001766:30425..31150 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.342947	0	0.674352	1.11372	0	0.355306	0.177406	0	1.36322	0.975294	3.4042	1.64197	0.567119	1.1869	0	0	0	0	0.572792	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top