TCONS_00038063 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038063
Unique NameTCONS_00038063
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038063 ID=TCONS_00038063|Name=TCONS_00038063|organism=Clytia hemisphaerica|type=transcript|length=696bp
CTTATTTGCTAATTCGCGCACCTTTTAATTTTCGCGCGGCCTAGTGCgcg
aaaatagacctttttcgcgcaccctttaattttcgcgcagtGGTAGTGCG
CGAAAATTAAGGGCGCGCGAAATTTAAGGGCATTAAGGTAATGGAATTCC
TTCAGGTTGTATTCGGATCCGCGTCTGGTCTTTATGCGAAGGTTGGTTGC
TTTTTCTCTGAATTCGTTCGAAGCATTTTGAGACGCACGAGGTTAAGCTA
ATGTGACGAAAATATGAAACAAGTTCAGTAGCTGGTTTCTTCACTTTCAG
TAGCGGCAGGATGGTGGCTATCCTCCATATACGAGGGCATGCTGCATCGC
GGAGGCACAtgttgaaaattgtcaaaatttctTGTTGGGCTTTTGGGCTA
AGTTCTTTCAGAAAGGTCGGAGGTATTTCGTTTGGACCTTGAGCTCCTTT
CCTGTTCATTTTTGAGATTGCTTTCCTCATTTCTCTCATGGAGAAATCTC
TTCCTGTTGCATGACATTATTGACCTTGCCCATAAACCATGGAACACGGA
TTTAGTACCAGTACAAGTCATGTCGAGGGAAATCCAGTTATTTAAATCTT
TGTAGCAATGGAACATGACGATGTCTTCCCAGTGTTTTCGATTGGGATTG
AATTCAGGAAGACTTTTAGGTGTGTCGGGGTCATCTTTTCTGAGCG
Run BLAST on NCBI

protein sequence of TCONS_00038063-protein

>TCONS_00038063-protein ID=TCONS_00038063-protein|Name=TCONS_00038063-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MREMRKAISKMNRKGAQGPNEIPPTFLKELSPKAQQEILTIFNMCLRDAA
CPRIWRIATILPLLKVKKPATELVSYFRHISLTSCVSKCFERIQRKSNQP
SHKDQTRIRIQPEGIPLP
Run BLAST on NCBI

transcript from alignment at sc0001765:41115..41810

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038063 ID=TCONS_00038063|Name=TCONS_00038063|organism=Clytia hemisphaerica|type=transcript|length=696bp|location=Sequence derived from alignment at sc0001765:41115..41810 (Clytia hemisphaerica)
CGCTCAGAAAAGATGACCCCGACACACCTAAAAGTCTTCCTGAATTCAAT
CCCAATCGAAAACACTGGGAAGACATCGTCATGTTCCATTGCTACAAAGA
TTTAAATAACTGGATTTCCCTCGACATGACTTGTACTGGTACTAAATCCG
TGTTCCATGGTTTATGGGCAAGGTCAATAATGTCATGCAACAGGAAGAGA
TTTCTCCATGAGAGAAATGAGGAAAGCAATCTCAAAAATGAACAGGAAAG
GAGCTCAAGGTCCAAACGAAATACCTCCGACCTTTCTGAAAGAACTTAGC
CCAAAAGCCCAACAagaaattttgacaattttcaacaTGTGCCTCCGCGA
TGCAGCATGCCCTCGTATATGGAGGATAGCCACCATCCTGCCGCTACTGA
AAGTGAAGAAACCAGCTACTGAACTTGTTTCATATTTTCGTCACATTAGC
TTAACCTCGTGCGTCTCAAAATGCTTCGAACGAATTCAGAGAAAAAGCAA
CCAACCTTCGCATAAAGACCAGACGCGGATCCGAATACAACCTGAAGGAA
TTCCATTACCTTAATGCCCTTAAATTTCGCGCGCCCTTAATTTTCGCGCA
CTACCactgcgcgaaaattaaagggtgcgcgaaaaaggtctattttcgcG
CACTAGGCCGCGCGAAAATTAAAAGGTGCGCGAATTAGCAAATAAG

Coding sequence (CDS) from alignment at sc0001765:41115..41810

>TCONS_00038063 ID=TCONS_00038063|Name=TCONS_00038063|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0001765:41115..41810 (Clytia hemisphaerica)
ATGAGAGAAATGAGGAAAGCAATCTCAAAAATGAACAGGAAAGGAGCTCA
AGGTCCAAACGAAATACCTCCGACCTTTCTGAAAGAACTTAGCCCAAAAG
CCCAACAagaaattttgacaattttcaacaTGTGCCTCCGCGATGCAGCA
TGCCCTCGTATATGGAGGATAGCCACCATCCTGCCGCTACTGAAAGTGAA
GAAACCAGCTACTGAACTTGTTTCATATTTTCGTCACATTAGCTTAACCT
CGTGCGTCTCAAAATGCTTCGAACGAATTCAGAGAAAAAGCAACCAACCT
TCGCATAAAGACCAGACGCGGATCCGAATACAACCTGAAGGAATTCCATT
ACCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022723XLOC_022723Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038063-proteinTCONS_00038063-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038063-exon-sc0001765-1491911889:41115..41810TCONS_00038063-exon-sc0001765-1491911889:41115..41810Clytia hemisphaericaexon
TCONS_00038063-exon-sc0001765-1510915933:41115..41810TCONS_00038063-exon-sc0001765-1510915933:41115..41810Clytia hemisphaericaexon
TCONS_00038063-exon-sc0001765-1575043694:41115..41810TCONS_00038063-exon-sc0001765-1575043694:41115..41810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001765supercontigsc0001765:41115..41810 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0728496	0.0883774	0.247452	0.484186	1.47363	0.621055	1.40489	1.40293	0.613889	0.760401	0.295226	0.582209	0.988171	0.899862	0.868694	1.02103	1.25782	1.00896	0.851848	1.25214	1.90175	1.75214	0.250584	0.683451	0	0.279221	1.67032	1.06607	0.970288	1.23571
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038063 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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