|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038062 ID=TCONS_00038062|Name=TCONS_00038062|organism=Clytia hemisphaerica|type=transcript|length=1631bp
ATCTTGCAGTGTTGCAACTTAGCACTAAGTTATCTTGCAGCGCTGCAACT
TAGTGAAGTGTTATCTTGCAGTGCTGCAACTTAGCACTAAGTTATCTTGC
AGTGCTGCAACTTAGCAAAGTGTTATCTTGCAGCGCTGCAACTTAGCAAA
GTTTTGTCGCGCTGCAActtagcaaaaataaattttcctaaTATGACGTC
ATATTTGACCAATCATAATGcaatgttttgatcacgtgatctGTAATAGC
GCGCACATttcaattcaagatggcggatgagCGGGACAGGTTGATCAAAC
GTTACTTTGAAAATGGATATGACTACAAAGAAATACGAGCAACCTTACGT
GAAGTTCATAACGAAACTATCAGTACTAGGCATCTTCACAGGGTCTTAAG
AAGGTATCATCTTTATAGACGGGGAAACACAAGCGATACAAGGGAGGTTT
TGTATTTCATTGAAAGTCAGTTGAGAGAGGGAAGTGGGACTTTGCTTGGC
TACAGACTGATGCATCTAAGATGTCAGCAAAATGGCTTTAATATATCTAG
AAAGAATGTGGCATTGATACTCAAGCACCTAGATCCTGAAGGTGTTAACA
GAAGGAGCAGAAGAGTTTTGAAGAGAAGAAGATACTGGTCATATGGGCCA
AATTGGgtttggcatattgatggatATGACAAACTCAAGCCTTATGGGTT
TCCTATCCATGGATGTATTGATGGTTTCAGCAGAAACATATTGTGGCTTG
AGATTGCATCATCAAACAAAGATCCTTCTGTGGTAtgcaatttttatttg
aatcagATTCATAGAATTTCTGGAGTTCCTAGAAAAGTTGTTGGCGATAG
AGGTACCGAAAACATTTACATAGCTGCATCTCAGAGGTTCTTTAGGCGAA
ATGATAACGACAATGCCTCAGGTGCGAACAGTTTTAAATATGGACGTTCT
GTGTCAAATCAGAGAATAGAATCATGGTGGTCTATGCTTAGACGTTCTTG
TACGAACTGGTGGataaactttttcaaagatCTCATTGAAAGAGGTTCAT
TTGATACATCAAATTTAATCGAGTGTGAGTGTataaaattttgcttttat
cCTTTGCTCAAACAAGATCTCAGAGCCACAATGTCAACATGGAACAATCA
TCGAATTAGACCATCTGCAAATGCTGACAGAAGGATACGCCCTGCAGGGC
GCCCTAATGTTCTTTACACCACACCATCAATATCAGACAGAAATATTCAG
GATCATAAGTACGCATTGAATCAAGTAGATTTTGAAACTGTGAAAGAAAA
CTACTCTCAACAGACTAATTGTGACTATATCTGCTCTCCTGAATTTTTTG
AGCTCAGTACAATCTTAATGTTTGAGAACTCTATTGATCAACCCAAAGAT
ACCCAAGAAGCACTTGTGCTTTATCAAAGACTTTTAATGGAAATcaatag
aatttaaaaaagCTGCACTAAATATACTCCAGACTCCAGATTTGTTTGTA
TTTGTTTTAGGTTTTCCTGGGTTTTCAAGGTAGTTTATGGTGTTTGTATT
TATGTACAAAGTCTATTCCAAAAAATTGGCAGTCCGCACATTTTGATAAA
TTGCTCTTGAAGGAGAAAAGATATAATgaaa Run BLAST on NCBI protein sequence of TCONS_00038062-protein >TCONS_00038062-protein ID=TCONS_00038062-protein|Name=TCONS_00038062-protein|organism=Clytia hemisphaerica|type=polypeptide|length=395bp
MADERDRLIKRYFENGYDYKEIRATLREVHNETISTRHLHRVLRRYHLYR
RGNTSDTREVLYFIESQLREGSGTLLGYRLMHLRCQQNGFNISRKNVALI
LKHLDPEGVNRRSRRVLKRRRYWSYGPNWVWHIDGYDKLKPYGFPIHGCI
DGFSRNILWLEIASSNKDPSVVCNFYLNQIHRISGVPRKVVGDRGTENIY
IAASQRFFRRNDNDNASGANSFKYGRSVSNQRIESWWSMLRRSCTNWWIN
FFKDLIERGSFDTSNLIECECIKFCFYPLLKQDLRATMSTWNNHRIRPSA
NADRRIRPAGRPNVLYTTPSISDRNIQDHKYALNQVDFETVKENYSQQTN
CDYICSPEFFELSTILMFENSIDQPKDTQEALVLYQRLLMEINRI Run BLAST on NCBI transcript from alignment at sc0001765:37210..38840 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038062 ID=TCONS_00038062|Name=TCONS_00038062|organism=Clytia hemisphaerica|type=transcript|length=1631bp|location=Sequence derived from alignment at sc0001765:37210..38840 (Clytia hemisphaerica)
tttcATTATATCTTTTCTCCTTCAAGAGCAATTTATCAAAATGTGCGGAC
TGCCAATTTTTTGGAATAGACTTTGTACATAAATACAAACACCATAAACT
ACCTTGAAAACCCAGGAAAACCTAAAACAAATACAAACAAATCTGGAGTC
TGGAGTATATTTAGTGCAGcttttttaaattctattgATTTCCATTAAAA
GTCTTTGATAAAGCACAAGTGCTTCTTGGGTATCTTTGGGTTGATCAATA
GAGTTCTCAAACATTAAGATTGTACTGAGCTCAAAAAATTCAGGAGAGCA
GATATAGTCACAATTAGTCTGTTGAGAGTAGTTTTCTTTCACAGTTTCAA
AATCTACTTGATTCAATGCGTACTTATGATCCTGAATATTTCTGTCTGAT
ATTGATGGTGTGGTGTAAAGAACATTAGGGCGCCCTGCAGGGCGTATCCT
TCTGTCAGCATTTGCAGATGGTCTAATTCGATGATTGTTCCATGTTGACA
TTGTGGCTCTGAGATCTTGTTTGAGCAAAGgataaaagcaaaattttatA
CACTCACACTCGATTAAATTTGATGTATCAAATGAACCTCTTTCAATGAG
atctttgaaaaagtttatCCACCAGTTCGTACAAGAACGTCTAAGCATAG
ACCACCATGATTCTATTCTCTGATTTGACACAGAACGTCCATATTTAAAA
CTGTTCGCACCTGAGGCATTGTCGTTATCATTTCGCCTAAAGAACCTCTG
AGATGCAGCTATGTAAATGTTTTCGGTACCTCTATCGCCAACAACTTTTC
TAGGAACTCCAGAAATTCTATGAATctgattcaaataaaaattgcaTACC
ACAGAAGGATCTTTGTTTGATGATGCAATCTCAAGCCACAATATGTTTCT
GCTGAAACCATCAATACATCCATGGATAGGAAACCCATAAGGCTTGAGTT
TGTCATatccatcaatatgccaaacCCAATTTGGCCCATATGACCAGTAT
CTTCTTCTCTTCAAAACTCTTCTGCTCCTTCTGTTAACACCTTCAGGATC
TAGGTGCTTGAGTATCAATGCCACATTCTTTCTAGATATATTAAAGCCAT
TTTGCTGACATCTTAGATGCATCAGTCTGTAGCCAAGCAAAGTCCCACTT
CCCTCTCTCAACTGACTTTCAATGAAATACAAAACCTCCCTTGTATCGCT
TGTGTTTCCCCGTCTATAAAGATGATACCTTCTTAAGACCCTGTGAAGAT
GCCTAGTACTGATAGTTTCGTTATGAACTTCACGTAAGGTTGCTCGTATT
TCTTTGTAGTCATATCCATTTTCAAAGTAACGTTTGATCAACCTGTCCCG
ctcatccgccatcttgaattgaaATGTGCGCGCTATTACagatcacgtga
tcaaaacattgCATTATGATTGGTCAAATATGACGTCATAttaggaaaat
ttatttttgctaagTTGCAGCGCGACAAAACTTTGCTAAGTTGCAGCGCT
GCAAGATAACACTTTGCTAAGTTGCAGCACTGCAAGATAACTTAGTGCTA
AGTTGCAGCACTGCAAGATAACACTTCACTAAGTTGCAGCGCTGCAAGAT
AACTTAGTGCTAAGTTGCAACACTGCAAGAT Coding sequence (CDS) from alignment at sc0001765:37210..38840 >TCONS_00038062 ID=TCONS_00038062|Name=TCONS_00038062|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at sc0001765:37210..38840 (Clytia hemisphaerica)
ttaaattctattgATTTCCATTAAAAGTCTTTGATAAAGCACAAGTGCTT
CTTGGGTATCTTTGGGTTGATCAATAGAGTTCTCAAACATTAAGATTGTA
CTGAGCTCAAAAAATTCAGGAGAGCAGATATAGTCACAATTAGTCTGTTG
AGAGTAGTTTTCTTTCACAGTTTCAAAATCTACTTGATTCAATGCGTACT
TATGATCCTGAATATTTCTGTCTGATATTGATGGTGTGGTGTAAAGAACA
TTAGGGCGCCCTGCAGGGCGTATCCTTCTGTCAGCATTTGCAGATGGTCT
AATTCGATGATTGTTCCATGTTGACATTGTGGCTCTGAGATCTTGTTTGA
GCAAAGgataaaagcaaaattttatACACTCACACTCGATTAAATTTGAT
GTATCAAATGAACCTCTTTCAATGAGatctttgaaaaagtttatCCACCA
GTTCGTACAAGAACGTCTAAGCATAGACCACCATGATTCTATTCTCTGAT
TTGACACAGAACGTCCATATTTAAAACTGTTCGCACCTGAGGCATTGTCG
TTATCATTTCGCCTAAAGAACCTCTGAGATGCAGCTATGTAAATGTTTTC
GGTACCTCTATCGCCAACAACTTTTCTAGGAACTCCAGAAATTCTATGAA
TctgattcaaataaaaattgcaTACCACAGAAGGATCTTTGTTTGATGAT
GCAATCTCAAGCCACAATATGTTTCTGCTGAAACCATCAATACATCCATG
GATAGGAAACCCATAAGGCTTGAGTTTGTCATatccatcaatatgccaaa
cCCAATTTGGCCCATATGACCAGTATCTTCTTCTCTTCAAAACTCTTCTG
CTCCTTCTGTTAACACCTTCAGGATCTAGGTGCTTGAGTATCAATGCCAC
ATTCTTTCTAGATATATTAAAGCCATTTTGCTGACATCTTAGATGCATCA
GTCTGTAGCCAAGCAAAGTCCCACTTCCCTCTCTCAACTGACTTTCAATG
AAATACAAAACCTCCCTTGTATCGCTTGTGTTTCCCCGTCTATAAAGATG
ATACCTTCTTAAGACCCTGTGAAGATGCCTAGTACTGATAGTTTCGTTAT
GAACTTCACGTAAGGTTGCTCGTATTTCTTTGTAGTCATATCCATTTTCA
AAGTAACGTTTGATCAACCTGTCCCGctcatccgccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038062-exon-sc0001765-1491911889:37210..38840 | TCONS_00038062-exon-sc0001765-1491911889:37210..38840 | Clytia hemisphaerica | exon |
| TCONS_00038062-exon-sc0001765-1510915933:37210..38840 | TCONS_00038062-exon-sc0001765-1510915933:37210..38840 | Clytia hemisphaerica | exon |
| TCONS_00038062-exon-sc0001765-1575043694:37210..38840 | TCONS_00038062-exon-sc0001765-1575043694:37210..38840 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001765 | supercontig | sc0001765:37210..38840 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
