TCONS_00038055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038055
Unique NameTCONS_00038055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length458

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038055 ID=TCONS_00038055|Name=TCONS_00038055|organism=Clytia hemisphaerica|type=transcript|length=458bp
GAAAACGTCCTCAAAACTCTAAGAGTTACGACAAACGAAGAATAACTGAA
AGTGTAGAGGTGAAAAAGGAAACTGCTATTAAAGAGACAAGAAAATCTTC
TAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTA
GAGGTGAAAAAGGAAACTGCTATTAAAGAGACAAGAAAATCTTCTAGAAA
CATCAAATTTTCACAAGAGGAAGATGAGGAGCTTTTAAAAGGGATACAAA
AAAATGGTGAGAAGAACTGGGCAGCCATTATAAAAGACAAAACATTTGAC
TTTCATCCCACCCTCAAGGACAAGAGACTCGTTGAGGGTACGAGCAgatt
cagcaaaatttaaaaagcttttgaaaatgtaaattgacTATGAATTTTGA
AGTGTTATTTTAATAGTTAATTAAATATTTGATGGAAATTTATAATAGGC
CAGTGTCA
Run BLAST on NCBI

transcript from alignment at sc0001764:87349..87806

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038055 ID=TCONS_00038055|Name=TCONS_00038055|organism=Clytia hemisphaerica|type=transcript|length=458bp|location=Sequence derived from alignment at sc0001764:87349..87806 (Clytia hemisphaerica)
TGACACTGGCCTATTATAAATTTCCATCAAATATTTAATTAACTATTAAA
ATAACACTTCAAAATTCATAgtcaatttacattttcaaaagctttttaaa
ttttgctgaatcTGCTCGTACCCTCAACGAGTCTCTTGTCCTTGAGGGTG
GGATGAAAGTCAAATGTTTTGTCTTTTATAATGGCTGCCCAGTTCTTCTC
ACCATTTTTTTGTATCCCTTTTAAAAGCTCCTCATCTTCCTCTTGTGAAA
ATTTGATGTTTCTAGAAGATTTTCTTGTCTCTTTAATAGCAGTTTCCTTT
TTCACCTCTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTCTAGAAGATTTTCTTGTCTCTTTAATAGCAGTTTCCTTTTTCACC
TCTACACTTTCAGTTATTCTTCGTTTGTCGTAACTCTTAGAGTTTTGAGG
ACGTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022715XLOC_022715Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038055-exon-sc0001764-1491911889:87349..87806TCONS_00038055-exon-sc0001764-1491911889:87349..87806Clytia hemisphaericaexon
TCONS_00038055-exon-sc0001764-1510915933:87349..87806TCONS_00038055-exon-sc0001764-1510915933:87349..87806Clytia hemisphaericaexon
TCONS_00038055-exon-sc0001764-1575043694:87349..87806TCONS_00038055-exon-sc0001764-1575043694:87349..87806Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001764supercontigsc0001764:87349..87806 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.142481	0.138941	0.092558	0	0	0	0.366363	0.239309	0.120066	0	0.288704	0.356723	1.36728	0.644666	0	3.40135	0	0.367097	0	0	0.413276	0.162354	0.510127	0	0	0.775506	1.39287	0.691753	34.3111	18.7292
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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