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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038051 ID=TCONS_00038051|Name=TCONS_00038051|organism=Clytia hemisphaerica|type=transcript|length=1150bp
GAAAGTACCAGACCCCCGTCTATCGTACAAATTATGTGTTTATGAAagta
taaaatgaaattaaatccaACTTTGTAAGATATCAAAGACGGGCATGGCC
CGCAGAAGAGTGCTCTTCGTAGACTGGCATTCTCTCAATGGATCTGCAAA
TGGAAAACGGAAACTGATTTTCAAGGAGAATGATCAAGGTAAATTTACTT
GTCCTGCTAAATTATGTTTACATGCTGATTTCGGAAGCAAGCGTGGGTTG
AGAAAACACATCGAGAATAATAACCATCCTTGGTTTTATTACTTTGATGA
ACAGCCAGAAGCTAGCAGAAATATAATAGAACAGAACCAACCAATTGTAC
AAAGGAAAGCCTCTACCTATTCTAAACCTTATTATTCTATGGACGAAGGA
ATCgggaaaacatttttcgattGGTTAAACACTACTGCTGGTGGAGGTAA
AAATAGCAGAGAAGCCAAACAGATTGCTAAGAgggctttaaaatttttaa
tgaacAGTACTGGAGACAACGAAACACAAGCTCCGTTATCTAATGAGTTG
ATTGATTGTTGTATAGGATCTACAACAATTATTCTGAAATTCTTAACTGT
TTTGGAAGAAGACTGGAAGCTTCAGGAGCCTTGAATTATATCAAATCGAT
TTCTGATTTGATGGATTTCAGAAAGGCAATGGGAGTAAATGACAATGAGC
TTcctttttttgcaataactgaAGTAGACTTGCGACGAGCGAAGGATAAT
TTACGCAAAAAGAAGCGTCTTGATGGaacaagaaattttgatttagaaAC
TCTTATAGGACGTGATAGTTGGGCAAGTTTAGAAGACATGGAAGAGGTTA
TCCCTTTTCATATAACAAACTTTAAGAGAATTGTGGATAAATGTAAAGCA
CAAGCACCGTTACCAAATAAGCAGGAGTTGACATTTTGTACTCGTTTTGT
TACCACGTATCTTTTCTTACGTGTTAAATGTAGCAGGCCAATGACTTTCC
AGTTTCTAACTTTACCAATGATTGCAAAGGCAAAACAAGCGGATGGATTC
ATCGACCAACGGGAGTTCAAAACCACAGGGAAGTATCTCTTTGATACGCT
CATTctaacaaaagaaatatttacaatacTTGACACCTATGTTGACTTTA Run BLAST on NCBI protein sequence of TCONS_00038051-protein >TCONS_00038051-protein ID=TCONS_00038051-protein|Name=TCONS_00038051-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MARRRVLFVDWHSLNGSANGKRKLIFKENDQGKFTCPAKLCLHADFGSKR
GLRKHIENNNHPWFYYFDEQPEASRNIIEQNQPIVQRKASTYSKPYYSMD
EGIGKTFFDWLNTTAGGGKNSREAKQIAKRALKFLMNSTGDNETQAPLSN
ELIDCCIGSTTIILKFLTVLEEDWKLQEP Run BLAST on NCBI transcript from alignment at sc0001764:67622..68771 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038051 ID=TCONS_00038051|Name=TCONS_00038051|organism=Clytia hemisphaerica|type=transcript|length=1150bp|location=Sequence derived from alignment at sc0001764:67622..68771 (Clytia hemisphaerica)
TAAAGTCAACATAGGTGTCAAgtattgtaaatatttcttttgttagAATG
AGCGTATCAAAGAGATACTTCCCTGTGGTTTTGAACTCCCGTTGGTCGAT
GAATCCATCCGCTTGTTTTGCCTTTGCAATCATTGGTAAAGTTAGAAACT
GGAAAGTCATTGGCCTGCTACATTTAACACGTAAGAAAAGATACGTGGTA
ACAAAACGAGTACAAAATGTCAACTCCTGCTTATTTGGTAACGGTGCTTG
TGCTTTACATTTATCCACAATTCTCTTAAAGTTTGTTATATGAAAAGGGA
TAACCTCTTCCATGTCTTCTAAACTTGCCCAACTATCACGTCCTATAAGA
GTttctaaatcaaaatttcttgttCCATCAAGACGCTTCTTTTTGCGTAA
ATTATCCTTCGCTCGTCGCAAGTCTACTtcagttattgcaaaaaaaggAA
GCTCATTGTCATTTACTCCCATTGCCTTTCTGAAATCCATCAAATCAGAA
ATCGATTTGATATAATTCAAGGCTCCTGAAGCTTCCAGTCTTCTTCCAAA
ACAGTTAAGAATTTCAGAATAATTGTTGTAGATCCTATACAACAATCAAT
CAACTCATTAGATAACGGAGCTTGTGTTTCGTTGTCTCCAGTACTgttca
ttaaaaattttaaagcccTCTTAGCAATCTGTTTGGCTTCTCTGCTATTT
TTACCTCCACCAGCAGTAGTGTTTAACCaatcgaaaaatgttttcccGAT
TCCTTCGTCCATAGAATAATAAGGTTTAGAATAGGTAGAGGCTTTCCTTT
GTACAATTGGTTGGTTCTGTTCTATTATATTTCTGCTAGCTTCTGGCTGT
TCATCAAAGTAATAAAACCAAGGATGGTTATTATTCTCGATGTGTTTTCT
CAACCCACGCTTGCTTCCGAAATCAGCATGTAAACATAATTTAGCAGGAC
AAGTAAATTTACCTTGATCATTCTCCTTGAAAATCAGTTTCCGTTTTCCA
TTTGCAGATCCATTGAGAGAATGCCAGTCTACGAAGAGCACTCTTCTGCG
GGCCATGCCCGTCTTTGATATCTTACAAAGTtggatttaatttcatttta
tactTTCATAAACACATAATTTGTACGATAGACGGGGGTCTGGTACTTTC
Coding sequence (CDS) from alignment at sc0001764:67622..68771 >TCONS_00038051 ID=TCONS_00038051|Name=TCONS_00038051|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at sc0001764:67622..68771 (Clytia hemisphaerica)
TCAAGGCTCCTGAAGCTTCCAGTCTTCTTCCAAAACAGTTAAGAATTTCA
GAATAATTGTTGTAGATCCTATACAACAATCAATCAACTCATTAGATAAC
GGAGCTTGTGTTTCGTTGTCTCCAGTACTgttcattaaaaattttaaagc
ccTCTTAGCAATCTGTTTGGCTTCTCTGCTATTTTTACCTCCACCAGCAG
TAGTGTTTAACCaatcgaaaaatgttttcccGATTCCTTCGTCCATAGAA
TAATAAGGTTTAGAATAGGTAGAGGCTTTCCTTTGTACAATTGGTTGGTT
CTGTTCTATTATATTTCTGCTAGCTTCTGGCTGTTCATCAAAGTAATAAA
ACCAAGGATGGTTATTATTCTCGATGTGTTTTCTCAACCCACGCTTGCTT
CCGAAATCAGCATGTAAACATAATTTAGCAGGACAAGTAAATTTACCTTG
ATCATTCTCCTTGAAAATCAGTTTCCGTTTTCCATTTGCAGATCCATTGA
GAGAATGCCAGTCTACGAAGAGCACTCTTCTGCGGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038051-exon-sc0001764-1491911889:67622..68771 | TCONS_00038051-exon-sc0001764-1491911889:67622..68771 | Clytia hemisphaerica | exon |
| TCONS_00038051-exon-sc0001764-1510915933:67622..68771 | TCONS_00038051-exon-sc0001764-1510915933:67622..68771 | Clytia hemisphaerica | exon |
| TCONS_00038051-exon-sc0001764-1575043694:67622..68771 | TCONS_00038051-exon-sc0001764-1575043694:67622..68771 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001764 | supercontig | sc0001764:67622..68771 . |
Blast
The following BLAST results are available for this feature:
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