TCONS_00038047 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038047
Unique NameTCONS_00038047
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1902

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038047 ID=TCONS_00038047|Name=TCONS_00038047|organism=Clytia hemisphaerica|type=transcript|length=1902bp
GATatgtgaagtctgaccattgatacgtgaagtctgaccattgatgggtg
aagtctgaccattgatgggtgaagtctgaccattgataggtgaagtctga
ccattgatacgtgaagtctgaccattgatgggtgaagtctgaccattgat
gtgTGACGTTGGAGCGTTGATTTGTGAGGTCAAAGGGTAGGTGTGTGACC
AACCATGATGGGACCATGGATTGCTTTGATACAACATGGGAACACCTTGA
TGATACGCAGGAGCGCCATGANNNNNNNNNNNNNNNNNNNNNNGAGTTGT
GAGGTCAAAGGGTAGGTGTGTGACCAACCATGATGGGACCATGGATTGCT
TTGATACAACATGGGAACACCTTGATGATACGCAggagcgccatgatgag
acATAGGAGCGCCATGATGAAACATTGGAGCACCATGATGATACATTGGA
GCGCCATGATGAGATGAAGGAGCGCCTTGATGAGACGTAGGAGCACCTTG
ATGAAACATTGGAGCACCTTGATGAGAGGTTGGAGCGCCTTGATGATATA
TTGGAGCACCTTGATGAGACGTAGGAGCACCTTGATGAAACGAAGGAGCG
CCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATG
AAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAG
GAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCT
TGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAA
CGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAG
CGCCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGA
TGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAACGA
AGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGC
CTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGA
AACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGG
AGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTT
GATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAAC
GAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGC
GCCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGAT
GAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAA
GGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCC
TTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAA
ACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGA
GCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTG
ATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAACG
AAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCG
CCTTGATGAAACGAAGGAGCGCCTTGATGAAACGAAGGAGCGCCTTGATG
AAACGAAGGAGCGCCTTGATGAAACGAAGGAGCACCTTGATGAGACAttg
aagcgccatgatgagacgtaGAAATGTCTTGTTCAGGCAGCGGAGCGTCA
TGTTCAGGCGGCGGAGCGTCGTGTTCAGGCGGCGGAGCGTCATGTTCAGG
CGGTGGAGCATCATGTTCAGGCGGCGGAGTGTCATGTTCAGGCGGCGGAG
TG
Run BLAST on NCBI

protein sequence of TCONS_00038047-protein

>TCONS_00038047-protein ID=TCONS_00038047-protein|Name=TCONS_00038047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=573bp
TPPPEHDTPPPEHDAPPPEHDAPPPEHDAPPPEHDAPLPEQDISTSHHGA
SMSHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAP
SFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPS
FHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSF
HQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFH
QGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQ
GAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQG
APSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGA
PSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPSFHQGAPTSHQGAP
IYHQGAPTSHQGAPMFHQGAPTSHQGAPSSHHGAPMYHHGAPMFHHGAPM
SHHGAPAYHQGVPMLYQSNPWSHHGWSHTYPLTSQLXXXXXXXXMALLRI
IKVFPCCIKAIHGPIMVGHTPTL
Run BLAST on NCBI

transcript from alignment at sc0001764:1894..3795

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038047 ID=TCONS_00038047|Name=TCONS_00038047|organism=Clytia hemisphaerica|type=transcript|length=1902bp|location=Sequence derived from alignment at sc0001764:1894..3795 (Clytia hemisphaerica)
CACTCCGCCGCCTGAACATGACACTCCGCCGCCTGAACATGATGCTCCAC
CGCCTGAACATGACGCTCCGCCGCCTGAACACGACGCTCCGCCGCCTGAA
CATGACGCTCCGCTGCCTGAACAAGACATTTCtacgtctcatcatggcgc
ttcaaTGTCTCATCAAGGTGCTCCTTCGTTTCATCAAGGCGCTCCTTCGT
TTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAA
GGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCC
TTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTC
ATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGC
GCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTC
GTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATC
AAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCT
CCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTT
TCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAG
GCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCT
TCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCA
TCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCG
CTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCG
TTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCA
AGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTC
CTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTT
CATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGG
CGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTT
CGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCAT
CAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGC
TCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGT
TTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAA
GGCGCTCCTTCGTTTCATCAAGGTGCTCCTACGTCTCATCAAGGTGCTCC
AATATATCATCAAGGCGCTCCAACCTCTCATCAAGGTGCTCCAATGTTTC
ATCAAGGTGCTCCTACGTCTCATCAAGGCGCTCCTTCATCTCATCATGGC
GCTCCAATGTATCATCATGGTGCTCCAATGTTTCATCATGGCGCTCCTAT
gtctcatcatggcgctccTGCGTATCATCAAGGTGTTCCCATGTTGTATC
AAAGCAATCCATGGTCCCATCATGGTTGGTCACACACCTACCCTTTGACC
TCACAACTCNNNNNNNNNNNNNNNNNNNNNNTCATGGCGCTCCTGCGTAT
CATCAAGGTGTTCCCATGTTGTATCAAAGCAATCCATGGTCCCATCATGG
TTGGTCACACACCTACCCTTTGACCTCACAAATCAACGCTCCAACGTCAc
acatcaatggtcagacttcacccatcaatggtcagacttcacgtatcaat
ggtcagacttcacctatcaatggtcagacttcacccatcaatggtcagac
ttcacccatcaatggtcagacttcacgtatcaatggtcagacttcacatA
TC

Coding sequence (CDS) from alignment at sc0001764:1894..3795

>TCONS_00038047 ID=TCONS_00038047|Name=TCONS_00038047|organism=Clytia hemisphaerica|type=CDS|length=1722bp|location=Sequence derived from alignment at sc0001764:1894..3795 (Clytia hemisphaerica)
ACTCCGCCGCCTGAACATGACACTCCGCCGCCTGAACATGATGCTCCACC
GCCTGAACATGACGCTCCGCCGCCTGAACACGACGCTCCGCCGCCTGAAC
ATGACGCTCCGCTGCCTGAACAAGACATTTCtacgtctcatcatggcgct
tcaaTGTCTCATCAAGGTGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTT
TCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAG
GCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCT
TCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCA
TCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCG
CTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCG
TTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCA
AGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTC
CTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTT
CATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGG
CGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTT
CGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCAT
CAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGC
TCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGT
TTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAA
GGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCC
TTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTC
ATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGC
GCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTC
GTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATC
AAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCT
CCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTT
TCATCAAGGCGCTCCTTCGTTTCATCAAGGCGCTCCTTCGTTTCATCAAG
GCGCTCCTTCGTTTCATCAAGGTGCTCCTACGTCTCATCAAGGTGCTCCA
ATATATCATCAAGGCGCTCCAACCTCTCATCAAGGTGCTCCAATGTTTCA
TCAAGGTGCTCCTACGTCTCATCAAGGCGCTCCTTCATCTCATCATGGCG
CTCCAATGTATCATCATGGTGCTCCAATGTTTCATCATGGCGCTCCTATg
tctcatcatggcgctccTGCGTATCATCAAGGTGTTCCCATGTTGTATCA
AAGCAATCCATGGTCCCATCATGGTTGGTCACACACCTACCCTTTGACCT
CACAACTCNNNNNNNNNNNNNNNNNNNNNNTCATGGCGCTCCTGCGTATC
ATCAAGGTGTTCCCATGTTGTATCAAAGCAATCCATGGTCCCATCATGGT
TGGTCACACACCTACCCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022707XLOC_022707Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038047-proteinTCONS_00038047-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038047-exon-sc0001764-1491911889:1894..3795TCONS_00038047-exon-sc0001764-1491911889:1894..3795Clytia hemisphaericaexon
TCONS_00038047-exon-sc0001764-1510915933:1894..3795TCONS_00038047-exon-sc0001764-1510915933:1894..3795Clytia hemisphaericaexon
TCONS_00038047-exon-sc0001764-1575043694:1894..3795TCONS_00038047-exon-sc0001764-1575043694:1894..3795Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001764supercontigsc0001764:1894..3795 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.300885	0.184311	0.156728	0.1114	0.118167	0.0250473	0.029107	0.0835686	0.0176588	0.0457058	0	0.0332251	0.0168079	0.0158945	0.0375509	0.147077	0.0876843	0.0787235	0.026611	0.227337	0.102688	0.192542	0.0261984	0.0950357	0.431953	0.275379	0.093278	0.0306659	0.137149	0.0765061
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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