TCONS_00038041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038041
Unique NameTCONS_00038041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038041 ID=TCONS_00038041|Name=TCONS_00038041|organism=Clytia hemisphaerica|type=transcript|length=1374bp
ATGCTACCTTTTTCTGTACCAAGGCTTAGATTTATACCATTTCTTGTGTT
ATTTCATTTGCTATGAGCTTTTTCTTGACTTTgtatttgtgtttatttta
tAGCCGTTACTTATCAGAAGAACGCGTCGAAAACCTACTCACCTAAATGT
CTCTGTCCATGAGTTTGGCCTACGGCATTTATAGTAAAAACACTCGCGTA
CATCCTATCGTAATGGCAGATTGAGCATTGGGATTCAAACAGCAACTTGC
ATAAATGTTTTGTTTGAACTAATTGTTACAGAATCAAACAATGGATCATG
GCAGTGAAATGATGGCTATCAACCTCGTAAAAGGATACGCTGAAGAGCGT
AACAAGCTTCTGGATAATATTTTCGAGTCAACCAGATTTCTCAAGCGTGT
TTATGGAAACAAATGTCGAGAGAGTATCGACCTTGAGATTGACAGATCTA
CGTATGATTACGAGAAAAAGAGACTCAATGGTTTGCTGCGTGACTTTGAA
GGTTTGTCAACCAAGCATAGAAatgcattttaatttttccttaaAGAACA
GTTTGAGCATGAGCTCTGTTTGTCTCGTGAAGTGGTCAAAACTGGTATTG
AAGTCATTGAATCCGCACCCCAGAGGCTTCGCGTcgcaaaaatttttctc
actttgAAAAGTGTCAAAACGCATGCATTGGAAGTAGTCCCTGCTGTTCG
TATCAACGAAGTTGTTGCAAAGTCTGTGCAAAATTTGTCTCGTGCGATTC
TTAAAAGAGCAATACCTCGTCGCGTATCAGGTGTGCAAGTCAGTGATGTT
CAACTAGTCAAACCCATACGTCATCAATGTGCATTGGAGATTGTTCCGGA
CGTTGTTTTATTCCCAGTGATAAAGATTGCCCCATTTCCTACTAGTCAAC
ATGTAATCGTTCAGAAGATTGAATGTACAAAGTCTCTTTCAAGTGTCTTC
ATTAAGAAAGACTTCGTTAATTGTGTCAAGGCTACAGCAGATTGCATTCA
AGCATATGGAAAAAATGTTCCTTCTGTATCTCCATCTCTCGATATAATTT
CTACAGGTCGTGGCAAAGTGAAAAGTAAAACTGTaaggaatattttttat
ttggaatGCGTGCTGAATTTAACTTATTGCAGACTTTTTATGAGATGCTT
TTGGACGTACTTAACGTTTGCTGATTTCATGACAGCGATTCTGATTGACA
ATGATTCTAGTGATCATCGTGGTAGCTATGAAGGATTTATACCTTATAAA
GAACTTTGGAATTGGCTTTATGTTCTAGAATTTTGTGGTCAAGATATTAA
TATCTTGACGGTGGGGAGTGTTACTGCCGTTAGACAGTAGTTTTTGTTAT
ATTAGTTTTATGTTTCCTTTGTAT
Run BLAST on NCBI

transcript from alignment at sc0001764:5546..7001+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038041 ID=TCONS_00038041|Name=TCONS_00038041|organism=Clytia hemisphaerica|type=transcript|length=1456bp|location=Sequence derived from alignment at sc0001764:5546..7001+ (Clytia hemisphaerica)
ATGCTACCTTTTTCTGTACCAAGGCTTAGATTTATACCATTTCTTGTGTT
ATTTCATTTGCTATGAGCTTTTTCTTGACTTTgtatttgtgtttatttta
tAGCCGTTACTTATCAGAAGAACGCGTCGAAAACCTACTCACCTAAATGT
CTCTGTCCATGAGTTTGGCCTACGGCATTTATAGTAAAAACACTCGCGTA
CATCCTATCGTAATGGCAGATTGAGCATTGGGATTCAAACAGCAACTTGC
ATAAATGTTTTGTTTGAACTAATTGTTACAGAATCAAACAATGGATCATG
GCAGTGAAATGATGGCTATCAACCTCGTAAAAGGATACGCTGAAGAGCGT
AACAAGCTTCTGGATAATATTTTCGAGTCAACCAGATTTCTCAAGCGTGT
TTATGGAAACAAATGTCGAGAGAGTATCGACCTTGAGATTGACAGATCTA
CGTATGATTACGAGAAAAAGAGACTCAATGGTTTGCTGCGTGACTTTGAA
GGTTTGTCAACCAAGCATAGAAatgcattttaatttttccttaaAGAACA
GTTTGAGCATGAGCTCTGTTTGTCTCGTGAAGTGGTCAAAACTGGTATTG
AAGTCATTGAATCCGCACCCCAGAGGCTTCGCGTcgcaaaaatttttctc
actttgAAAAGTGTCAAAACGCATGCATTGGAAGTAGTCCCTGCTGTTCG
TATCAACGAAGTTGTTGCAAAGTCTGTGCAAAATTTGTCTCGTGCGATTC
TTAAAAGAGCAATACCTCGTCGCGTATCAGGTGTGCAAGTCAGTGATGTT
CAACTAGTCAAACCCATACGTCATCAATGTGCATTGGAGATTGTTCCGGA
CGTTGTTTTATTCCCAGTGATAAAGATTGCCCCATTTCCTACTAGTCAAC
ATGTAATCGTTCAGAAGANAGATCGTTCCGGACGTTGTTTTATTCCCAGT
GGTAAAGATTGCCCAATTTCCTACTAGTCAACATGTAATCGTTCAGAAGA
TTGAATGTACAAAGTCTCTTTCAAGTGTCTTCATTAAGAAAGACTTCGTT
AATTGTGTCAAGGCTACAGCAGATTGCATTCAAGCATATGGAAAAAATGT
TCCTTCTGTATCTCCATCTCTCGATATAATTTCTACAGGTCGTGGCAAAG
TGAAAAGTAAAACTGTaaggaatattttttatttggaatGCGTGCTGAAT
TTAACTTATTGCAGACTTTTTATGAGATGCTTTTGGACGTACTTAACGTT
TGCTGATTTCATGACAGCGATTCTGATTGACAATGATTCTAGTGATCATC
GTGGTAGCTATGAAGGATTTATACCTTATAAAGAACTTTGGAATTGGCTT
TATGTTCTAGAATTTTGTGGTCAAGATATTAATATCTTGACGGTGGGGAG
TGTTACTGCCGTTAGACAGTAGTTTTTGTTATATTAGTTTTATGTTTCCT
TTGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022703XLOC_022703Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038041-exon-sc0001764-1491911889:5546..6445TCONS_00038041-exon-sc0001764-1491911889:5546..6445Clytia hemisphaericaexon
TCONS_00038041-exon-sc0001764-1510915933:5546..6445TCONS_00038041-exon-sc0001764-1510915933:5546..6445Clytia hemisphaericaexon
TCONS_00038041-exon-sc0001764-1575043694:5546..6445TCONS_00038041-exon-sc0001764-1575043694:5546..6445Clytia hemisphaericaexon
TCONS_00038041-exon-sc0001764-1491911889:6528..7001TCONS_00038041-exon-sc0001764-1491911889:6528..7001Clytia hemisphaericaexon
TCONS_00038041-exon-sc0001764-1510915933:6528..7001TCONS_00038041-exon-sc0001764-1510915933:6528..7001Clytia hemisphaericaexon
TCONS_00038041-exon-sc0001764-1575043694:6528..7001TCONS_00038041-exon-sc0001764-1575043694:6528..7001Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001764supercontigsc0001764:5546..7001 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.752634	0.722395	0.764651	0.784855	0.619146	0.630696	0.467809	0.852968	0.473196	0.998824	0.339161	0.914791	0.244984	0.210333	0.65859	0.685686	0.518919	0.663624	0.863436	0.29167	0.550262	0.400395	0.701316	0.757744	0.228872	0.511228	0.417571	0.335311	0.562629	0.582211
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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