TCONS_00038035 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038035
Unique NameTCONS_00038035
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038035 ID=TCONS_00038035|Name=TCONS_00038035|organism=Clytia hemisphaerica|type=transcript|length=379bp
CGATAATCATTTTGGATCGCTAAAGAAATGGGACCCCATTTTTCTGGTCA
CTCAAGGAGATTGTACGCTAATGTCAGATGAAGGTGTGGTCAGTAAAGAA
TACGAGAAGTTCATTCCTGAAGACCAGCGTGAAGAATTTCTCAAGTCACC
AGTCTGGACCATGTTGGTCTCCGCACGAAAGACGCGCATGGATTTCAGTG
ACGACAACTTGTTGTCTCATTTCAAATTGTCCTTCGAAGAATGCGTCAGT
GTTGTGTTGAAGGAGAACTTCACGGATCCTTTGATCGACGTCCTGCTCAG
CTACCCACCTTCCAGTACTTTGAACAAAACGGATGATTTGGAGTTGATCG
AAATATTAGCAAGACACCATTTTCAAAGA
Run BLAST on NCBI

transcript from alignment at sc0001763:7974..8551+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038035 ID=TCONS_00038035|Name=TCONS_00038035|organism=Clytia hemisphaerica|type=transcript|length=578bp|location=Sequence derived from alignment at sc0001763:7974..8551+ (Clytia hemisphaerica)
CGATAATCATTTTGGATCGCTAAAGAAATGGGACCCCATTTTTCTGGTCA
CTCAAGGAGATTGTACGCTAATGTCAGATGAAGGTACACTATTTTATACA
ATCATGTTTTCAATTAGCTGAGAATCTGATGCTACGACTTGAATTAGTTG
TTTTTCCCAACGGAAAAGTGTATCTGAGTAGGTTTCCCCTTTAGGTAGGT
AAGTAGTACGTAGTTCTGACGCTCTTAATAGTTGATTTGTTGAATGGAGA
TGTGCTGTAATCATTTCATGTTCAATTTACAGGTGTGGTCAGTAAAGAAT
ACGAGAAGTTCATTCCTGAAGACCAGCGTGAAGAATTTCTCAAGTCACCA
GTCTGGACCATGTTGGTCTCCGCACGAAAGACGCGCATGGATTTCAGTGA
CGACAACTTGTTGTCTCATTTCAAATTGTCCTTCGAAGAATGCGTCAGTG
TTGTGTTGAAGGAGAACTTCACGGATCCTTTGATCGACGTCCTGCTCAGC
TACCCACCTTCCAGTACTTTGAACAAAACGGATGATTTGGAGTTGATCGA
AATATTAGCAAGACACCATTTTCAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022698XLOC_022698Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038035-exon-sc0001763-1491911889:7974..8056TCONS_00038035-exon-sc0001763-1491911889:7974..8056Clytia hemisphaericaexon
TCONS_00038035-exon-sc0001763-1510915933:7974..8056TCONS_00038035-exon-sc0001763-1510915933:7974..8056Clytia hemisphaericaexon
TCONS_00038035-exon-sc0001763-1575043694:7974..8056TCONS_00038035-exon-sc0001763-1575043694:7974..8056Clytia hemisphaericaexon
TCONS_00038035-exon-sc0001763-1491911889:8256..8551TCONS_00038035-exon-sc0001763-1491911889:8256..8551Clytia hemisphaericaexon
TCONS_00038035-exon-sc0001763-1510915933:8256..8551TCONS_00038035-exon-sc0001763-1510915933:8256..8551Clytia hemisphaericaexon
TCONS_00038035-exon-sc0001763-1575043694:8256..8551TCONS_00038035-exon-sc0001763-1575043694:8256..8551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001763supercontigsc0001763:7974..8551 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.01526	3.75606	1.41517	0	0	0	4.59354	0	7.06287	3.1794	0.572454	2.94381	1.10642	0	4.71903	5.34257	6.99061	7.22494	6.79646	6.82375	5.23001	4.66249	4.4666	3.02427	0	0	4.19758	3.05263	5.18467	1.6901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038035 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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