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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038028 ID=TCONS_00038028|Name=TCONS_00038028|organism=Clytia hemisphaerica|type=transcript|length=388bp
GACATGGAAAATGACACAGTGTCGCGGCAGTGAAGAAGATAGCGACGTTT
TTTGTAGAAGGGGCAATTATCTTCACGTCGTCAAAGCAACCTATGGTCGA
CTCAAGTACAGGCCATGCTTAACATATTTCAGCAAATTGAAACAAGAGAT
TGATGTAACGAAAGCGGTACAGCGAGTTTGTCATGGAACAAAGAAATGCT
ACCTGTACAAGAACgcgaaagaaattttcaaatatgCTAAGTCTGAATAT
GATGGAAATGAAAAACATCTGTTCTTTAATGTACAATTTAAATGCAAAGg
aTCTGCTCCACCAACGTTTCCTCCACCAACTCAAGTAGCTACGACAAAAG
CTCCTGAATACATAACCAGTAAGTAGCCAGGATCTGGC Run BLAST on NCBI protein sequence of TCONS_00038028-protein >TCONS_00038028-protein ID=TCONS_00038028-protein|Name=TCONS_00038028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
TWKMTQCRGSEEDSDVFCRRGNYLHVVKATYGRLKYRPCLTYFSKLKQEI
DVTKAVQRVCHGTKKCYLYKNAKEIFKYAKSEYDGNEKHLFFNVQFKCKG
SAPPTFPPPTQVATTKAPEYITSK Run BLAST on NCBI transcript from alignment at sc0001760:22929..24911- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038028 ID=TCONS_00038028|Name=TCONS_00038028|organism=Clytia hemisphaerica|type=transcript|length=1983bp|location=Sequence derived from alignment at sc0001760:22929..24911- (Clytia hemisphaerica)
GACATGGAAAATGACACAGTGTCGCGGCAGTGAAGAAGATAGCGACGTTT
TTTGTAGAAGGGGCAATTATCTTCACGTCGTCAAAGCAACCTATGGTCGA
CTCAAGTACAGGCCATGCTTAACATATTTCAGCAAATTGAAACAAGAGAT
TGATGTAACGAAAGCGGTACAGCGAGTTTGTCATGGAACAAAGAAATGCT
ACCTGTACAAGAACGCGAAAGAAATTTTCAAATATGCTAAGTCTGAATAT
GATGGAAATGAAAAACATCTGTTCTTTAATGTACAATTTAAATGCAAAGG
TAATTGATTTTGAATTTACGGGGTGTGGGGTTATTTGTTTTATTTGCAGG
TAACGATACGCTCTTTTAAGATTTGGCACAAAAAACTTAAATTGGAGGGT
ATGGTTAGAAAATTAATTGGCATCATCATTAGTAAAACACTCTAAGCTAC
AGGGTGTTTCACAAAAAAGTATACTGAAAAAGTATTGCAATTTTTAGAAA
GAAGTACTGAACTATTCTGCTTGGTTGTTAACTTTTAGCTCAAAGCAGAG
CTACTCAGCTTCCTGTGTTTTCAAATGTCAAGTCTTAAGTACATAAGGGT
ACGACTTTTCAACATTCTTCTTACCACCGCTAAAAGAATTAACTTCAACA
AGCGCGCTTTCATCAACGAGAAATTTGACTTACAAGCTACATAGGTTCGA
CCATAAAACTGAAAATTTCATCAAGGTGACAAAAAAAGAGAACAATCATA
AGAAAACTGAGTTTAAATTTTGAGTGTACCTTTTTGTGAAACGCCCTGTA
CTTTCAAATACTTAATCTCATTGATTGAAATTCGATTGACATTTTTGCTT
ACGTTAGTTTGTAATTTCCTGCGAACTTATAATTTCCCTCCTAGATTTTC
CCGCAAAATTGAAATTTCCATCGTTTGGAAATTCATCACCTTTTTTCGAA
TTTCTTCGAAGGCGTAAGTCAATGGAATACTATCCAATTAAAACTCGATT
TGCGTTTCTATGACTTTAGACCTCTTTTTAAAGTACTAGATTGATTTCCA
GTGTTAAATTAACGTCTAATTGTTAGAATTGTTAGAATTTCAATCCAAAC
CATGAGATTAACCAGGAATCCCATGCTTGTTTTCGTGAAATTCTGGATAA
ATTACCCTCGGTCAAATTTCTAAATTTTTCTAATTTCCCTTCTTGCACTC
GGAAAATTGCAAAAAAATTCAAAATTGACCTCGGGAAATTTATCTCGTAA
CCATGAAATTACTAGTACTAATCCCACAAAGAATTACACCATTATTGAAA
TGTTTAGCATGTGAACAGGTAAATCTTCCATGTCCAGTTCCAAGTACGCA
TGCTTAAGCATTCAAAATTATTTTATTTTAGGATCTGCTCCACCAACGTT
TCCTCCACCAACTCAAGGTAAGAGCCTTGGAGAGCATTTTCAGTAGCCTC
ATACTTTTGAAATTCGAACCTCTTAGTACGCCCTGCAGTAGGTATACGCC
CCGTAACCATCATCTAAAATAAACACCAAAAAATATCCCCTAAATCCTCA
AAACACCTCTTTTAACAGGATGAAAATTCCTATTGAAATCCCGATGGGGA
TAAAAATGTTATTATGCTTGGAGTGCAAGTTTTTAAAATTAAATTTCGAA
TGCAGATGAAATGTGAAAGTCAATTTCCCAGTGGGGCTGAAATCCCAGGG
AACTTTCCCACCGGGGACGAAATTTTTGCCAAATTTTCCATTGGGGCTGG
GTTCCCAGCGGGTCTATGACAGAGGGGTATCTCAAATAAAATATAGATGG
TACCAATTGTATCCATTCGCCTGTCAAAGGAAAAGGAAAAGCCAACATCA
CACTCTTTTATTGGTCTCCCTATAATATCAGTTTTATTTTGAACATAATA
TCAGCATATGTATTTCATTTCATATTATAGTAGCTACGACAAAAGCTCCT
GAATACATAACCAGTAAGTAGCCAGGATCTGGC Coding sequence (CDS) from alignment at sc0001760:22929..24911- >TCONS_00038028 ID=TCONS_00038028|Name=TCONS_00038028|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at sc0001760:22929..24911- (Clytia hemisphaerica)
TAGCTACGACAAAAGCTCCTGAATACATAACCAGTAAGTAGGATCTGCTC
CACCAACGTTTCCTCCACCAACTCAAGACATGGAAAATGACACAGTGTCG
CGGCAGTGAAGAAGATAGCGACGTTTTTTGTAGAAGGGGCAATTATCTTC
ACGTCGTCAAAGCAACCTATGGTCGACTCAAGTACAGGCCATGCTTAACA
TATTTCAGCAAATTGAAACAAGAGATTGATGTAACGAAAGCGGTACAGCG
AGTTTGTCATGGAACAAAGAAATGCTACCTGTACAAGAACGCGAAAGAAA
TTTTCAAATATGCTAAGTCTGAATATGATGGAAATGAAAAACATCTGTTC
TTTAATGTACAATTTAAATGCAAAGTAGCTACGACAAAAGCTCCTGAATA
CATAACCAGTAAGTAGGATCTGCTCCACCAACGTTTCCTCCACCAACTCA
AGACATGGAAAATGACACAGTGTCGCGGCAGTGAAGAAGATAGCGACGTT
TTTTGTAGAAGGGGCAATTATCTTCACGTCGTCAAAGCAACCTATGGTCG
ACTCAAGTACAGGCCATGCTTAACATATTTCAGCAAATTGAAACAAGAGA
TTGATGTAACGAAAGCGGTACAGCGAGTTTGTCATGGAACAAAGAAATGC
TACCTGTACAAGAACGCGAAAGAAATTTTCAAATATGCTAAGTCTGAATA
TGATGGAAATGAAAAACATCTGTTCTTTAATGTACAATTTAAATGCAAAG
TAGCTACGACAAAAGCTCCTGAATACATAACCAGTAAGTAGGATCTGCTC
CACCAACGTTTCCTCCACCAACTCAAGACATGGAAAATGACACAGTGTCG
CGGCAGTGAAGAAGATAGCGACGTTTTTTGTAGAAGGGGCAATTATCTTC
ACGTCGTCAAAGCAACCTATGGTCGACTCAAGTACAGGCCATGCTTAACA
TATTTCAGCAAATTGAAACAAGAGATTGATGTAACGAAAGCGGTACAGCG
AGTTTGTCATGGAACAAAGAAATGCTACCTGTACAAGAACGCGAAAGAAA
TTTTCAAATATGCTAAGTCTGAATATGATGGAAATGAAAAACATCTGTTC
TTTAATGTACAATTTAAATGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038028-exon-sc0001760-1575043694:24613..24911 | TCONS_00038028-exon-sc0001760-1575043694:24613..24911 | Clytia hemisphaerica | exon |
| TCONS_00038028-exon-sc0001760-1575043694:23495..23530 | TCONS_00038028-exon-sc0001760-1575043694:23495..23530 | Clytia hemisphaerica | exon |
| TCONS_00038028-exon-sc0001760-1575043694:22929..22981 | TCONS_00038028-exon-sc0001760-1575043694:22929..22981 | Clytia hemisphaerica | exon |
| TCONS_00038028-exon-sc0001760-1510915933:24613..24911 | TCONS_00038028-exon-sc0001760-1510915933:24613..24911 | Clytia hemisphaerica | exon |
| TCONS_00038028-exon-sc0001760-1510915933:23495..23530 | TCONS_00038028-exon-sc0001760-1510915933:23495..23530 | Clytia hemisphaerica | exon |
| TCONS_00038028-exon-sc0001760-1510915933:22929..22981 | TCONS_00038028-exon-sc0001760-1510915933:22929..22981 | Clytia hemisphaerica | exon |
| TCONS_00038028-exon-sc0001760-1491911889:24613..24911 | TCONS_00038028-exon-sc0001760-1491911889:24613..24911 | Clytia hemisphaerica | exon |
| TCONS_00038028-exon-sc0001760-1491911889:23495..23530 | TCONS_00038028-exon-sc0001760-1491911889:23495..23530 | Clytia hemisphaerica | exon |
| TCONS_00038028-exon-sc0001760-1491911889:22929..22981 | TCONS_00038028-exon-sc0001760-1491911889:22929..22981 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001760 | supercontig | sc0001760:22929..24911 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000922 | Lectin_gal-bd_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030246 | carbohydrate binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0030246 |
carbohydrate binding |
Blast
The following BLAST results are available for this feature:
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