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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038024 ID=TCONS_00038024|Name=TCONS_00038024|organism=Clytia hemisphaerica|type=transcript|length=650bp
ttgctatctaactttcatcatcaggtattcagcatgtagcttgttaaCAC
TAAAATAGCTGGCACTTCCTTTTTTTAGATTCCCTTTTAATTCTTAGCCT
GTGTCATATTTTTCTTGCATTGCTGGCCATTGTTTGAATCCAAAACTGCT
CGTCTTtggttctttttcttttgttttattttcaggagAATTCACGCAGA
ACAACTCTTGGTGGAGTATTTTACTCGACGCNttgttttattttcaggag
AATTCACGCAGAACAACTCTTGGTGGAGTATTTTACTCGACGCGATGTCT
CTCTTGGTCAAGTTTTACTGAATACAAAACAACCATgTAAAAACATAAAT
TAACAACAAACCATGTCTGCTGATCTCGATCAAGAAATTGCGGCCCTTAA
AGGTAAAATGGAAGAAATGGCCAACTCGTTGAACTaTCTCCAAGAAATGC
AGAAACAAACCAAAGAGCTCATCAGGGAGCATAAAATCGAAAAGTGCATT
GAACGAACTTACAAAGAGTTCCTCCTCGCTGTCAAGGAAGGCACGTCCAA
TGACACATCAGACCAGGCCTTGGGGAACTGGGTTCGGAACCTGGGCCTGC
AGCCCCCAAGGTCGTTTCAAAAAAGAAAGTACCCTTCAAACTAATAAAAA Run BLAST on NCBI transcript from alignment at sc0001759:7672..11847+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038024 ID=TCONS_00038024|Name=TCONS_00038024|organism=Clytia hemisphaerica|type=transcript|length=4176bp|location=Sequence derived from alignment at sc0001759:7672..11847+ (Clytia hemisphaerica)
ttgctatctaactttcatcatcaggtattcagcatgtagcttgttaaCAC
TAAAATAGCTGGCACTTCCTTTTTTTAGATTCCCTTTTAATTCTTAGCCT
GTGTCATATTTTTCTTGCATTGCTGGCCATTGTTTGAATCCAAAACTGCT
CGTCTTtggttctttttcttttgttttattttcaggagAATTCACGCAGA
ACAACTCTTGGTGGAGTATTTTACTCGACGCNttgttttattttcaggag
AATTCACGCAGAACAACTCTTGGTGGAGTATTTTACTCGACGCGATGTCT
CTCTTGGTCAAGTTTTACTGAATACAAAACAACCATGTAAGTAGATTGTA
ATAGAACCATTcctatggatttttttttagttttgaaatttctaatGAAC
ATTAGTAAGTAACACCAAACATTTGTTCAAAGTTCTATGGAATTAAATTT
ACTTTCTTCCAACTTTCTTTTAGAGAAACCGTAGAAGCACGAGGAGATCA
ATATGAAAGAAAGTGTCCCAGAAAACATAGTCCAATTAACTAAGAAAATG
CTGTTTTCAccagaaaatctttttgattctttttctctttcaaaCCAAAA
GCCTTCTAAACTTCAGCGgcaattcaaaagaaaaaaagaaaaacagcaTT
TGATTGAAAGTCCTTTATCAGTTATTTTTCTGGGACACTGTACAGAAAGA
AGATATCCAGTTTGCCCAGTTTCGAGAGTCAACGAATCTATGTAGTGCAT
TAATTAGTTTTCCTGAGAGTTGAATGACTTTGAAATAGTTTCATTTGTAC
GAAATATATACCCGAGTCATTTCTTAATTGGTCTTTGTTCTGACTGATTC
TGTTGATCCTATTCGGCaacatttaatattttttttattttttaacaggT
AAAAACATAAATTAACAACAAACCATGTCTGCTGATCTCGATCAAGAAAT
TGCGGCCCTTAAAGGTAAAATGGAAGAAATGGCCAACTCGTTGAACTGTA
AGTACCAGCCTTATATTAAACACACTCAAGGGCTCTGGCTATAGTCAAAC
GATAAGTTATGACAatgttttaacaaaaaattgcctATATAAGTtgtttg
aatttattttatcaCGGGTATGTTATTAGCAATttaattttacaaaaagt
gcttagttttaaagGGTAATTagcctttttgtttcaattttttttttaat
tatctgCAAATGATTGAAATatctatcaaaatttttttttaaattgctgN
aattttttttttaattatctgCAAATGATTGAAATatctatcaaaatttt
ttttaattgatttatcAAAAGTTAAGACTCTTTTTGTACGAGAAATTGGg
ttgaaaaattggtcaaaagccACAACCGAAAATAGGGTCCTCAAAGTTGT
AATACTtgtctttattttcttcttcatcaaattttttcaatgcaattttt
gaatgttcCAATTCGACTAGTTAGCCTAACAGAAAATAACACAACAGAAA
ATGTATAGcataacagaaaatgtataacataacatttttGTTGTTTACAT
TCGTCAGTAAAACACATTTTATACACGTCAAATATGAAAGATTCAATTTT
CGGTGCGTCCAAACGAACGAATTTCGCAAGATGAATTTTTCCGCTTTAAA
ATCATCCCTATTCTATCACAaaccatttttggacctaccccggtggggtg
aaggtcctataaattcacctcggtccgttcgtccgtctgtccgttcgtta
ccagcttctcgagattgaatcataggaatcatttgatttttggtacaaag
gtgcaaaacagtggtggccaaaatgtgacggagcccgattttcgaaaaat
aattttttgggcaaatttgggccaaaaaacggctagaAAACGGgtatttt
ggactttgtgaaaaattggatcattaaatttttttgattttttgcatgaa
agtagggtaccatcataggtaaaagatggctcaagcNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaagatggctcaagc
agatttttgcaaaaaaatttatttggcttaaaaaacgcatgtttatctat
aagaatcactattaataagcatacattaatgttcttggtcaaattaattt
ctttatgagatagaagttttttttgctcatgagggcttacttttgaagaa
tatgtgtgtttagacatgaaattttggttgcttgtcGTGTTTTTATAGGA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNtattaggtattagcttttctcgagattggctctttcattcttt
atgattttttgcacaaagatgcataactataaaccctcgaatgtgactga
gcccgattttacaaaaaaaaatgtttttggacaaatttgggccaaaaacg
gctaaaaaaaagggttttttggactttgtgaaatattggatcgttgtttt
ttttctgattttttgcatgaaagtagttAAAGATGGGTCAAGCAGATTTT
TGTAAAATAACTTTTCAGCTCAAAAAACGCATCTTTatctataagaatca
ctattaataagcatacatcaatgttcttagccaaattactcaattttttg
atgagatagatgtctttttatgctcacgaagtcttgaatatggaagaata
tttcaagagtatgaaatttggtttctaaacgttttgttataagaaacaaa
tgactaattttaataaatcgtcactatttttgttctgaatgattgtttaa
cgttcatgcaCACGTAGATAACAATTATAtgatgtgttaaatgcataacc
aggtaggtccataaaagtatcacttgtcttTCCTTTGTTTTCCGCAAATA
CTACCTACTGCTTAAACAGGTTATGATAACtggttctttcttttttctta
agaTCTCCAAGAAATGCAGAAACAAACCAAAGAGCTCATCAGGGAGCATA
AAATCGAAAAGTGCATTGGTAAGTTATTCTTTCAATCCATCAAAATCTTT
TCGCTGTGAGTTTCACTGTcacaaacaaaaatgaaaatggggTTATCTTC
TATTCGTCTCTTAGTAGGGAACTAATCCTtattagtcaggtagaattgca
tAACTACCCAGACAAAAATGGTATAGAGATGAATCACCAAAAAAAGCCCC
ACCCCTAggaagatgggaacaccctcaaatccataatAGCGGCGGGCAGG
GACTTTCCTCTCGCTGAGTAGATAAAGAAATTagggtcacttttgaaatt
aGACCACGTGGTCCTGAGATATGACctctaaagtccaaaaatgacaattt
tgattacgtcagcatttttactgaGATAGATAAATTGGAACGTCGATGAG
CTAATCATGAAGCCCTAATCATTGGcttcgatacttaacctccttATTAT
GTAGCCCTGATCATgggcttttagaaaaatatgaTTTATTATGTTTAGAT
CAGCCGTTGGTAAGATAAAACtattttaaaatcgtttaaaactgttattt
ttgctgagtcaaattttaaaatcggAAATCTCGCCAACGGTTAGTTTTAA
AAATactaaaccatatatttttctgaaagcctgtctagttatttttgact
tttgaaaaccattaaaaatcagttatcaagggtccccGGGACAAACTAGg
gtggagcatgttgcattgcaccatcGCGAAAAcctctcgtgtccccaagc
ctttagggattgaaaattgttccgaattttttgtgttttcattttctaaa
taaaaatttactgtAATTCTATTGTAGAACGAACTTACAAAGAGTTCCTC
CTCGCTGTCAAGGAAGGCACGTCCAATGACACATCAGACCAGGCCTTGGG
GAACTGGGTTCGGAACCTGGGCCTGCAGCCCCCAAGGTCGTTTCAAAAAA
GAAAGTACCCTTCAAACTAATAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038024-exon-sc0001759-1491911889:7672..8007 | TCONS_00038024-exon-sc0001759-1491911889:7672..8007 | Clytia hemisphaerica | exon |
| TCONS_00038024-exon-sc0001759-1510915933:7672..8007 | TCONS_00038024-exon-sc0001759-1510915933:7672..8007 | Clytia hemisphaerica | exon |
| TCONS_00038024-exon-sc0001759-1575043694:7672..8007 | TCONS_00038024-exon-sc0001759-1575043694:7672..8007 | Clytia hemisphaerica | exon |
| TCONS_00038024-exon-sc0001759-1491911889:8570..8668 | TCONS_00038024-exon-sc0001759-1491911889:8570..8668 | Clytia hemisphaerica | exon |
| TCONS_00038024-exon-sc0001759-1510915933:8570..8668 | TCONS_00038024-exon-sc0001759-1510915933:8570..8668 | Clytia hemisphaerica | exon |
| TCONS_00038024-exon-sc0001759-1575043694:8570..8668 | TCONS_00038024-exon-sc0001759-1575043694:8570..8668 | Clytia hemisphaerica | exon |
| TCONS_00038024-exon-sc0001759-1491911889:10824..10889 | TCONS_00038024-exon-sc0001759-1491911889:10824..10889 | Clytia hemisphaerica | exon |
| TCONS_00038024-exon-sc0001759-1510915933:10824..10889 | TCONS_00038024-exon-sc0001759-1510915933:10824..10889 | Clytia hemisphaerica | exon |
| TCONS_00038024-exon-sc0001759-1575043694:10824..10889 | TCONS_00038024-exon-sc0001759-1575043694:10824..10889 | Clytia hemisphaerica | exon |
| TCONS_00038024-exon-sc0001759-1491911889:11699..11847 | TCONS_00038024-exon-sc0001759-1491911889:11699..11847 | Clytia hemisphaerica | exon |
| TCONS_00038024-exon-sc0001759-1510915933:11699..11847 | TCONS_00038024-exon-sc0001759-1510915933:11699..11847 | Clytia hemisphaerica | exon |
| TCONS_00038024-exon-sc0001759-1575043694:11699..11847 | TCONS_00038024-exon-sc0001759-1575043694:11699..11847 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001759 | supercontig | sc0001759:7672..11847 + |
Blast
The following BLAST results are available for this feature:
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