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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038019 ID=TCONS_00038019|Name=TCONS_00038019|organism=Clytia hemisphaerica|type=transcript|length=882bp
CACCCACTCATCCCTCCCGCCCTAAACCACTTTTGGATTTCATAGTGAAT
AATGATTCATAATCTAAAAATAACCTTTTTCAGGATCCTTAGTTCTTGGT
CCTCACTTGTTGAAAAAATCGCGTAAAATTTGTTAGACGCGTGGAACAAA
AAGTGCTAAGCGAAtaatttttaaacactttttattTCATCGTAAACAAT
GATCTATAATCTAATATTGATTGTAACTAGTTTATAACTGTCTTTCATAG
GGAATCTTCAAAAGGGACACACTGTTACGGACCTTTTTCTTCTCCCAAAC
TAGATGACATAGAGGAACTTCACAGCTTTTTCAAACCAGGagaTACCATG
CTAGAATTTCAAAAGCTACGAACAAGATCCATGTTATTGAAGTCCGAAGA
TTACAAGAGATCCCTTTCTAGAGACAATAAAGCTGTCCAATTTACCTACA
ACAATAATCAATACAATTATGGGCTAATAAAACGTTTTATAAAGGTAAAT
GACAAACTATTTTTGGCCATCGTGAACTTGCTCGTCCAATCAAATGAAGC
ACTGCGGGGAACTATTGAGAATGAAGCTTTCGAAGTGACTCATATCAAAT
CATTTAAAAGGACTAACAGAATATCGGCTATAGACACTAACACGATTACG
GCTAAAAAGATCTGCTTACCAAAGaaggaaacaatttttttgataGATCT
GGTTAACAGAAATGAAAGTGACTAAgaaatcgtcaattttttataatggt
aatttatgcgaaaaataaactttcaacgttttacaatttgaaattttaac
tcATCAAAAACTAAACATTTTGCATCCCCATTTGTATGTAGCTTCTTAAT
CATCCCTACTGAATATTCTCACCAGAAAGATG Run BLAST on NCBI transcript from alignment at sc0001758:7532..9428- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038019 ID=TCONS_00038019|Name=TCONS_00038019|organism=Clytia hemisphaerica|type=transcript|length=1897bp|location=Sequence derived from alignment at sc0001758:7532..9428- (Clytia hemisphaerica)
CACCCACTCATCCCTCCCGCCCTAAACCACTTTTGGATTTCATAGTGAAT
AATGATTCATAATCTAAAAATAACCTTTTTCAGGATCCTTAGTTCTTGGT
CCTCACTTGTTGAAAAAATCGCGTAAAATTTGTTAGACGCGTGGAACAAA
AAGTGCTAAGCGAATAATTTTTAAACACTTTTTATTTCATCGTAAACAAT
GATCTATAATCTAATATTGATTGTAACTAGTTTATAACTGTCTTTCATAG
GGAATCTTCAAAAGGGACACACTGTTACGGACCTTTTTCTTCTCCCAAAC
TAGATGACATAGAGGAACTTCACAGCTTTTTCAAACCAGGGTAAAATACT
TCTATTTTAACATTGTTAATTTAAAAACTGCATTTAATCAGAGAGATGTG
ATTTAATCTTGTAGTCGTTTGCACTTAACAATGATTAAAAAACAAATGTC
TCACTTTCAAATTTCTTTGAATAACGCCTAATATTTTTACAAAAAATTTT
CTTTCAAAAAGAGATACCATGCTAGAATTTCAAAAGCTACGAACAAGATC
CATGTTATTGAAGTCCGAAGATTACAAGAGATCCCTTTCTAGAGACAATA
AAGCTGTCCAATTTACCTACAACAATAATCAATACAATTATGGGCTAATA
AAACGTTTTATAAAGGTAAGGTTTTATCTTGAGTTTGAGATTCGATTTAC
GATAATAGGACAGTTTATTGTTGTTGAATATATGGAAAACTCAAGAAAAA
TCATTGCGAATCTTTCCATTCATTCAACTTTTAGGTAAATGACAAACTAT
TTTTGGCCATCGTGAACTTGCTCGTCCAATCAAATGAAGCACTGCGGGGA
ACTATTGAGAATGAAGCTTTCGAAGTGACTCATATCAAATCATTTAAAAG
GTAAGAAGGAAATTCATCTCCTTTATTCTTAATTCTTTTCAAGTATTGAT
TAGAAACTTTGTTTTGCCTTCAATGGCTAAACTAAACACATTTAGGTGTT
TAAGGTCTACAATTTGAGATTTACAAGTGTATTTTTAAAACTTTAAATTT
TTCAACCTCAAAACTGGCTCAATTAATGGGTAATTCTTGCACATTTAACG
NGGGTGTTTAAGGTCCACAATTTGAGATTTACAAGTGTATTTTTAAAACT
TTAAATTTTTCAACCTCAAAACTGGCTCAATTAATGGGTAATTCTTGCAC
ATTTAACGCTTTAACACTTTAACAAGTTCCCAGCCCTTTTGAGAACCCCT
TCAAATAGTTTTTATAGTTCCTGTAGTGTGGAACACCTTCTGAGGTTGAC
ATTTTCTTTAAAGAGTCATATTCGAACAGTTAACCCTAAATACCACTCCT
ATAATGAAAATCGAGATATCATTGGAACTCTCTCATACTGATCTACAACC
TCTGATAATTTTGAAGTGTTGTAATAAGTCTACAAAAAGTGATTGACAGT
CTGAAATTTCAATAAGTTTTGAAAAATGTCACAGTATTTTTGACCAGGAT
CTAATTGTTTAATTATATTCACGTTGTCCTTAGCATATATTTTTGAGACT
TTAAAAAATCTAGCAAATTGATTTTCTAACGTTAATGTTAACGCTTGATA
TTAATTTTGATCTATTATTTTATAGGACTAACAGAATATCGGCTATAGAC
ACTAACACGATTACGGCTAAAAAGATCTGCTTACCAAAGAAGGAAACAAT
TTTTTTGATAGATCTGGTTAACAGAAATGAAAGTGACTAAGAAATCGTCA
ATTTTTTATAATGGTAATTTATGCGAAAAATAAACTTTCAACGTTTTACA
ATTTGAAATTTTAACTCATCAAAAACTAAACATTTTGCATCCCCATTTGT
ATGTAGCTTCTTAATCATCCCTACTGAATATTCTCACCAGAAAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038019-exon-sc0001758-1575043694:9089..9428 | TCONS_00038019-exon-sc0001758-1575043694:9089..9428 | Clytia hemisphaerica | exon |
| TCONS_00038019-exon-sc0001758-1575043694:8764..8917 | TCONS_00038019-exon-sc0001758-1575043694:8764..8917 | Clytia hemisphaerica | exon |
| TCONS_00038019-exon-sc0001758-1575043694:8529..8644 | TCONS_00038019-exon-sc0001758-1575043694:8529..8644 | Clytia hemisphaerica | exon |
| TCONS_00038019-exon-sc0001758-1575043694:7532..7803 | TCONS_00038019-exon-sc0001758-1575043694:7532..7803 | Clytia hemisphaerica | exon |
| TCONS_00038019-exon-sc0001758-1510915933:9089..9428 | TCONS_00038019-exon-sc0001758-1510915933:9089..9428 | Clytia hemisphaerica | exon |
| TCONS_00038019-exon-sc0001758-1510915933:8764..8917 | TCONS_00038019-exon-sc0001758-1510915933:8764..8917 | Clytia hemisphaerica | exon |
| TCONS_00038019-exon-sc0001758-1510915933:8529..8644 | TCONS_00038019-exon-sc0001758-1510915933:8529..8644 | Clytia hemisphaerica | exon |
| TCONS_00038019-exon-sc0001758-1510915933:7532..7803 | TCONS_00038019-exon-sc0001758-1510915933:7532..7803 | Clytia hemisphaerica | exon |
| TCONS_00038019-exon-sc0001758-1491911889:9089..9428 | TCONS_00038019-exon-sc0001758-1491911889:9089..9428 | Clytia hemisphaerica | exon |
| TCONS_00038019-exon-sc0001758-1491911889:8764..8917 | TCONS_00038019-exon-sc0001758-1491911889:8764..8917 | Clytia hemisphaerica | exon |
| TCONS_00038019-exon-sc0001758-1491911889:8529..8644 | TCONS_00038019-exon-sc0001758-1491911889:8529..8644 | Clytia hemisphaerica | exon |
| TCONS_00038019-exon-sc0001758-1491911889:7532..7803 | TCONS_00038019-exon-sc0001758-1491911889:7532..7803 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001758 | supercontig | sc0001758:7532..9428 - |
Blast
The following BLAST results are available for this feature:
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