TCONS_00038017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038017
Unique NameTCONS_00038017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038017 ID=TCONS_00038017|Name=TCONS_00038017|organism=Clytia hemisphaerica|type=transcript|length=469bp
TTTCTATGGCGTTTAGGTGattatttaaagataatatTTGTACGTATCTC
CTGTCATTTGCTTACTCAgccttttaaaacaaaagaaaccaacaattttt
tccTCTGCGCGTGTGGGGCGGGAGCACATTCTTTTGTTAAATCTGCTGTA
TCAGCATAGGCGACGCGCTTTGTCTGTATATCATGAAGTATGTTATCTTT
AAGAAGGCAGTCACAAATACCATTATTTTACTAAAAAGTGAGTTGATCAG
TCAGTCGGTTGGTTCAAAAAACTTTGTTTGGGTTTTCTTGTTTGACCTCC
ATCAACAGCCAGTCAAAACAAGATATGAATGCGTGTTTACTGTAGCATGG
TTTCAAGTTACAAACTTTAACTACAACCTTTGACTGAAAGGTCACCATAC
TTTTAAGGGGCCACTcacatttatcaatttttcccaTGACTATAGCCTCA
ATCTAACGCTAAGTACAAG
Run BLAST on NCBI

transcript from alignment at sc0001757:34481..34949

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038017 ID=TCONS_00038017|Name=TCONS_00038017|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at sc0001757:34481..34949 (Clytia hemisphaerica)
CTTGTACTTAGCGTTAGATTGAGGCTATAGTCAtgggaaaaattgataaa
tgtgAGTGGCCCCTTAAAAGTATGGTGACCTTTCAGTCAAAGGTTGTAGT
TAAAGTTTGTAACTTGAAACCATGCTACAGTAAACACGCATTCATATCTT
GTTTTGACTGGCTGTTGATGGAGGTCAAACAAGAAAACCCAAACAAAGTT
TTTTGAACCAACCGACTGACTGATCAACTCACTTTTTAGTAAAATAATGG
TATTTGTGACTGCCTTCTTAAAGATAACATACTTCATGATATACAGACAA
AGCGCGTCGCCTATGCTGATACAGCAGATTTAACAAAAGAATGTGCTCCC
GCCCCACACGCGCAGAggaaaaaattgttggtttcttttgttttaaaagg
cTGAGTAAGCAAATGACAGGAGATACGTACAAatattatctttaaataat
CACCTAAACGCCATAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022684XLOC_022684Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038017-exon-sc0001757-1491911889:34481..34949TCONS_00038017-exon-sc0001757-1491911889:34481..34949Clytia hemisphaericaexon
TCONS_00038017-exon-sc0001757-1510915933:34481..34949TCONS_00038017-exon-sc0001757-1510915933:34481..34949Clytia hemisphaericaexon
TCONS_00038017-exon-sc0001757-1575043694:34481..34949TCONS_00038017-exon-sc0001757-1575043694:34481..34949Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001757supercontigsc0001757:34481..34949 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.409359	0.133063	0	0	0	0.290821	0	0	0	0	0	0	0	0.0942453	0.0774824	0.249452	0	0.209984	0	0	0.395791	0.965265	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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