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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037968 ID=TCONS_00037968|Name=TCONS_00037968|organism=Clytia hemisphaerica|type=transcript|length=1150bp
AGGACTTGGGAGGAAGAGCTCGAAGGAAGAAGACTTGGAAAGAAGAACTC
AAAGGAAAAGGACTTGAAAAGGAGAACTTGAAGGAGAAGGACTTGAATNG
AAATTGGACTCACTCATCGCCGGACTGAATGAGGATTTACGAATATCAAT
CATTTTAAAGAGATTCAAAACCTTCAATGAAGCAGTGGCTTACATCAGAT
TGAGAACGCGATCAAGCCGAATTACAATGTGAACTCCACCAAACTGTTCA
AAGAGCTGAACGAAAAGATCGACGAATTAGCAGCTGACGCGTGTACTGTC
CAATCTTCCGGTGCAACACCAAGACGAGTGTCATTAAATGAGTACGCCGG
TGAAAGAGTTCTCGATGAACAAGTATCCGAGGTGATCGAACAAAAGTTAC
GAATGATAATGCCTCAAACAATCAATACGCTTGGCCGACCAAAATTTGCA
TCATCGACAGACGGAATGAGAGAGATCGAAAGAATGCAAGCCGAAATCAA
GAATCTCAAGCAAAAACGAAACAGACCTcctcaacaaaataaaagaatcg
GCTTAGATGGACGCCGCGACACTTCAACGCGAACGCTGGTAAGAGATCAG
AAACCTCGAGAATCCTCAAAAATTTACCCACCACCGAATATTATCAACCG
ACCACCGAAAATTATTCGCCAACCACGCAAGGCATTTATACAACCACCAA
AGATTCATCCGCCACCTATCATTATCGAAGTTCACTCGCCACCGAAGGTT
CATTACCGACCACCAAAGATTATTCGCCGACCACGTATAACATGTCAACA
ACCGCCGAAATTTCACTCACCGAGCGAAATTGTTTATGAACCGTCAAAAC
TTCACTCGTTGTCAAAGATTACAAACCTGTCTCCAAAGATATACCATCTT
CCGCTAAAGAAATCGCAAGAAATGATTCAACATTCATCTAGAATTATTCA
AAATCCCTCCAAGGTTATCCATCAGTCACCAAATAATTCACAGCATTTGT
CAGAAATTAAGAAAACACTGTCAAAGAATATTGAAAAGTCTTCCAGAATA
AACCAGTGCGAGAATATTGTAAAGCCGTCCGAGAGTGTCAAAAAGTCATC
CGAGATTGTTAAAAATTCAACCGAGATTGTCAAAAAGCCGTCCGAGATTG Run BLAST on NCBI protein sequence of TCONS_00037968-protein >TCONS_00037968-protein ID=TCONS_00037968-protein|Name=TCONS_00037968-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MIMPQTINTLGRPKFASSTDGMREIERMQAEIKNLKQKRNRPPQQNKRIG
LDGRRDTSTRTLVRDQKPRESSKIYPPPNIINRPPKIIRQPRKAFIQPPK
IHPPPIIIEVHSPPKVHYRPPKIIRRPRITCQQPPKFHSPSEIVYEPSKL
HSLSKITNLSPKIYHLPLKKSQEMIQHSSRIIQNPSKVIHQSPNNSQHLS
EIKKTLSKNIEKSSRINQCENIVKPSESVKKSSEIVKNSTEIVKKPSEI Run BLAST on NCBI transcript from alignment at sc0001747:32738..33887 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037968 ID=TCONS_00037968|Name=TCONS_00037968|organism=Clytia hemisphaerica|type=transcript|length=1150bp|location=Sequence derived from alignment at sc0001747:32738..33887 (Clytia hemisphaerica)
CAATCTCGGACGGCTTTTTGACAATCTCGGTTGAATTTTTAACAATCTCG
GATGACTTTTTGACACTCTCGGACGGCTTTACAATATTCTCGCACTGGTT
TATTCTGGAAGACTTTTCAATATTCTTTGACAGTGTTTTCTTAATTTCTG
ACAAATGCTGTGAATTATTTGGTGACTGATGGATAACCTTGGAGGGATTT
TGAATAATTCTAGATGAATGTTGAATCATTTCTTGCGATTTCTTTAGCGG
AAGATGGTATATCTTTGGAGACAGGTTTGTAATCTTTGACAACGAGTGAA
GTTTTGACGGTTCATAAACAATTTCGCTCGGTGAGTGAAATTTCGGCGGT
TGTTGACATGTTATACGTGGTCGGCGAATAATCTTTGGTGGTCGGTAATG
AACCTTCGGTGGCGAGTGAACTTCGATAATGATAGGTGGCGGATGAATCT
TTGGTGGTTGTATAAATGCCTTGCGTGGTTGGCGAATAATTTTCGGTGGT
CGGTTGATAATATTCGGTGGTGGGTAAATTTTTGAGGATTCTCGAGGTTT
CTGATCTCTTACCAGCGTTCGCGTTGAAGTGTCGCGGCGTCCATCTAAGC
cgattcttttattttgttgaggAGGTCTGTTTCGTTTTTGCTTGAGATTC
TTGATTTCGGCTTGCATTCTTTCGATCTCTCTCATTCCGTCTGTCGATGA
TGCAAATTTTGGTCGGCCAAGCGTATTGATTGTTTGAGGCATTATCATTC
GTAACTTTTGTTCGATCACCTCGGATACTTGTTCATCGAGAACTCTTTCA
CCGGCGTACTCATTTAATGACACTCGTCTTGGTGTTGCACCGGAAGATTG
GACAGTACACGCGTCAGCTGCTAATTCGTCGATCTTTTCGTTCAGCTCTT
TGAACAGTTTGGTGGAGTTCACATTGTAATTCGGCTTGATCGCGTTCTCA
ATCTGATGTAAGCCACTGCTTCATTGAAGGTTTTGAATCTCTTTAAAATG
ATTGATATTCGTAAATCCTCATTCAGTCCGGCGATGAGTGAGTCCAATTT
CNATTCAAGTCCTTCTCCTTCAAGTTCTCCTTTTCAAGTCCTTTTCCTTT
GAGTTCTTCTTTCCAAGTCTTCTTCCTTCGAGCTCTTCCTCCCAAGTCCT
Coding sequence (CDS) from alignment at sc0001747:32738..33887 >TCONS_00037968 ID=TCONS_00037968|Name=TCONS_00037968|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at sc0001747:32738..33887 (Clytia hemisphaerica)
AATCTCGGACGGCTTTTTGACAATCTCGGTTGAATTTTTAACAATCTCGG
ATGACTTTTTGACACTCTCGGACGGCTTTACAATATTCTCGCACTGGTTT
ATTCTGGAAGACTTTTCAATATTCTTTGACAGTGTTTTCTTAATTTCTGA
CAAATGCTGTGAATTATTTGGTGACTGATGGATAACCTTGGAGGGATTTT
GAATAATTCTAGATGAATGTTGAATCATTTCTTGCGATTTCTTTAGCGGA
AGATGGTATATCTTTGGAGACAGGTTTGTAATCTTTGACAACGAGTGAAG
TTTTGACGGTTCATAAACAATTTCGCTCGGTGAGTGAAATTTCGGCGGTT
GTTGACATGTTATACGTGGTCGGCGAATAATCTTTGGTGGTCGGTAATGA
ACCTTCGGTGGCGAGTGAACTTCGATAATGATAGGTGGCGGATGAATCTT
TGGTGGTTGTATAAATGCCTTGCGTGGTTGGCGAATAATTTTCGGTGGTC
GGTTGATAATATTCGGTGGTGGGTAAATTTTTGAGGATTCTCGAGGTTTC
TGATCTCTTACCAGCGTTCGCGTTGAAGTGTCGCGGCGTCCATCTAAGCc
gattcttttattttgttgaggAGGTCTGTTTCGTTTTTGCTTGAGATTCT
TGATTTCGGCTTGCATTCTTTCGATCTCTCTCATTCCGTCTGTCGATGAT
GCAAATTTTGGTCGGCCAAGCGTATTGATTGTTTGAGGCATTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037968-exon-sc0001747-1491911889:32738..33887 | TCONS_00037968-exon-sc0001747-1491911889:32738..33887 | Clytia hemisphaerica | exon |
| TCONS_00037968-exon-sc0001747-1510915933:32738..33887 | TCONS_00037968-exon-sc0001747-1510915933:32738..33887 | Clytia hemisphaerica | exon |
| TCONS_00037968-exon-sc0001747-1575043694:32738..33887 | TCONS_00037968-exon-sc0001747-1575043694:32738..33887 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001747 | supercontig | sc0001747:32738..33887 . |
Blast
The following BLAST results are available for this feature:
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