TCONS_00037960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037960
Unique NameTCONS_00037960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length823

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037960 ID=TCONS_00037960|Name=TCONS_00037960|organism=Clytia hemisphaerica|type=transcript|length=823bp
ttttttttaacattatttccGTTTATATTTATACTAGCATTATTCTTCTG
AAATTTAGGAAAGGAAAGTTCACAAAAGGTGGATTATAAAAATTATGATA
ACGGTAGACAATTTTTTAGGGATACGATCTAGTTTTGATTAATTCGGTAA
TATTCTAATTACATCAATTCAATTAAAAATGTAACGCTCGCAAGCATTTT
TGAGTTCTTTAATTAGCTCTTCTCTGTTTTTTATGGTCCACATTTTggtg
gtttttatacaaaatttccTCATAGTTGGGGCCACttatgtcccaaaaaa
aatcccTTGAGTGCACAGACTTTCTTAGAAGCAAACTAACCTTTTCATAT
GATTATTGAGGTACTATAAAGGTTACATAAAACTTAAACGCCCTTAAACT
GGTCCCCATGTGGCGTTATAACTTTGCTGGGGACTCAAAATGGAAGTGAA
CATTAGAAGGTTGTACATCATAGTGTACAGAGGGGTATCAAGCCtctctt
aaaaatcaaaatatcacTGGATATGAAGAGCGTAGTGGCCCTCACTATCA
AGAGAGTCACAGAAGTGAATGAACAGGTAATCTTTTAGGTAAAAGAAACT
TCATAATTTAGTCTGTAATTCtcatattttaaaagtttacaTATTGCGTT
AATATTTACAGTTTAGTATATATTATGGTGGGTTAGTAACTGATGCCTTA
AGAGGCTTATTGATTCAACCACACTCATTTTAGTTAATCCAATTTTGCAA
TCTGATTTACAAGTTTTGATGTTTGCATACAAATACTGCTATCACTGAAA
CGTTTCATTTAATGATGCCTTCG
Run BLAST on NCBI

transcript from alignment at sc0001746:37656..38478

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037960 ID=TCONS_00037960|Name=TCONS_00037960|organism=Clytia hemisphaerica|type=transcript|length=823bp|location=Sequence derived from alignment at sc0001746:37656..38478 (Clytia hemisphaerica)
CGAAGGCATCATTAAATGAAACGTTTCAGTGATAGCAGTATTTGTATGCA
AACATCAAAACTTGTAAATCAGATTGCAAAATTGGATTAACTAAAATGAG
TGTGGTTGAATCAATAAGCCTCTTAAGGCATCAGTTACTAACCCACCATA
ATATATACTAAACTGTAAATATTAACGCAATAtgtaaacttttaaaatat
gaGAATTACAGACTAAATTATGAAGTTTCTTTTACCTAAAAGATTACCTG
TTCATTCACTTCTGTGACTCTCTTGATAGTGAGGGCCACTACGCTCTTCA
TATCCAgtgatattttgatttttaagagaGGCTTGATACCCCTCTGTACA
CTATGATGTACAACCTTCTAATGTTCACTTCCATTTTGAGTCCCCAGCAA
AGTTATAACGCCACATGGGGACCAGTTTAAGGGCGTTTAAGTTTTATGTA
ACCTTTATAGTACCTCAATAATCATATGAAAAGGTTAGTTTGCTTCTAAG
AAAGTCTGTGCACTCAAgggattttttttgggacataaGTGGCCCCAACT
ATGAggaaattttgtataaaaaccaccAAAATGTGGACCATAAAAAACAG
AGAAGAGCTAATTAAAGAACTCAAAAATGCTTGCGAGCGTTACATTTTTA
ATTGAATTGATGTAATTAGAATATTACCGAATTAATCAAAACTAGATCGT
ATCCCTAAAAAATTGTCTACCGTTATCATAATTTTTATAATCCACCTTTT
GTGAACTTTCCTTTCCTAAATTTCAGAAGAATAATGCTAGTATAAATATA
AACggaaataatgttaaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022645XLOC_022645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037960-exon-sc0001746-1491911889:37656..38478TCONS_00037960-exon-sc0001746-1491911889:37656..38478Clytia hemisphaericaexon
TCONS_00037960-exon-sc0001746-1510915933:37656..38478TCONS_00037960-exon-sc0001746-1510915933:37656..38478Clytia hemisphaericaexon
TCONS_00037960-exon-sc0001746-1575043694:37656..38478TCONS_00037960-exon-sc0001746-1575043694:37656..38478Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001746supercontigsc0001746:37656..38478 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.288907	0.169038	0	0	0.233764	0.369447	0.222861	0.0695466	0.146074	0.30156	0.175621	0.153928	0.115286	0.438993	0.492152	0.281683	0.173505	0.400133	0.307114	0.0642746	0.949727	0.163498	0.662509	0.36139	0	0	0.475378	0.253668	0	0.0653412
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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