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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037958 ID=TCONS_00037958|Name=TCONS_00037958|organism=Clytia hemisphaerica|type=transcript|length=1060bp
tatcaaaactccaagcactttgggacatttgttcggcctcaagacgtcgg
gaaacgtctgaactttttcgtgggtcacccggtacattCACAGTGAACAT
TATTTGATGTGTCAAACAAATCATTTTCTATTAAATCTCTAAAATAGTTG
ATCCACCAATTCGTGCATGTACGTCTTAACATCGCCCACCATGACTCAAT
TCGCTGATTGGTAACTGATTTGCCATACTTAAAACTTGCCTCGCCAGAAT
TATTGTCTTGGTCGTTTCTTCTCAGGAACCTCTGAGAAGCCGCCACATGA
ACATTTTCTGTACCTCTATCACCAACAATCTTACGGGGTGTTCCAGAAAT
CGTTTTaatacatttcaaaaaaaagctACAAATTATTTCGGGCTCTTTAT
TTGACGAGGTCACTTCCAGCCACATAATTCTACGGCTAAAGCCATCTATT
GCTCCATGAATTGGGAAGCCATAAGGTTTGAGTTTATCGTAGCCGTCGAT
ATGCCAAACCCAATTAGGCCCATAAGACCAATATTGACGACGTTTTAATA
CCTTTCTGCTTCGTTCTTCAACACCAATAGGATCCAAAAGCTTGAGCATG
ATACGAATATTTTCCCTAGTTGTGCGATAACCTGCTTGCAAACATCTTTG
GTGCATTAAACGGTATCCTAACGATGAACCACTGCTTCTCAACTGCCTCT
GAACAAATGATATGGCATCTCTAGTATCACAACCATATTTTCTTCGATAC
AGATTTTGGTTACGAAGAACCCTATGAAGTTGCCTTAAGCTGATGATTTT
TGAGTGTACTTGTCTAAGCGTCGTGATTATCTCCTCATAGTCGTATCCTC
TATCAAAGTATTCCCTGACAAGAGAGTCTCTGTCAACTgccattcaaaaa
tatttaagaacCGATTAGAAACTTTCATGCACAAGCAAAATCGACTTGAT
GTTTGCACACTTATAACTGGATAACACGTACAACTACAAGAAGAAAAAGT
AAGGATCTGACAAGGTAAACCTGACGCCATTATTGCTACTGATTGCTATG
CACCCTCCTT Run BLAST on NCBI protein sequence of TCONS_00037958-protein >TCONS_00037958-protein ID=TCONS_00037958-protein|Name=TCONS_00037958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MAVDRDSLVREYFDRGYDYEEIITTLRQVHSKIISLRQLHRVLRNQNLYR
RKYGCDTRDAISFVQRQLRSSGSSLGYRLMHQRCLQAGYRTTRENIRIML
KLLDPIGVEERSRKVLKRRQYWSYGPNWVWHIDGYDKLKPYGFPIHGAID
GFSRRIMWLEVTSSNKEPEIICSFFLKCIKTISGTPRKIVGDRGTENVHV
AASQRFLRRNDQDNNSGEASFKYGKSVTNQRIESWWAMLRRTCTNWWINY
FRDLIENDLFDTSNNVHCECTG Run BLAST on NCBI transcript from alignment at sc0001746:26310..27369 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037958 ID=TCONS_00037958|Name=TCONS_00037958|organism=Clytia hemisphaerica|type=transcript|length=1060bp|location=Sequence derived from alignment at sc0001746:26310..27369 (Clytia hemisphaerica)
AAGGAGGGTGCATAGCAATCAGTAGCAATAATGGCGTCAGGTTTACCTTG
TCAGATCCTTACTTTTTCTTCTTGTAGTTGTACGTGTTATCCAGTTATAA
GTGTGCAAACATCAAGTCGATTTTGCTTGTGCATGAAAGTTTCTAATCGg
ttcttaaatatttttgaatggcAGTTGACAGAGACTCTCTTGTCAGGGAA
TACTTTGATAGAGGATACGACTATGAGGAGATAATCACGACGCTTAGACA
AGTACACTCAAAAATCATCAGCTTAAGGCAACTTCATAGGGTTCTTCGTA
ACCAAAATCTGTATCGAAGAAAATATGGTTGTGATACTAGAGATGCCATA
TCATTTGTTCAGAGGCAGTTGAGAAGCAGTGGTTCATCGTTAGGATACCG
TTTAATGCACCAAAGATGTTTGCAAGCAGGTTATCGCACAACTAGGGAAA
ATATTCGTATCATGCTCAAGCTTTTGGATCCTATTGGTGTTGAAGAACGA
AGCAGAAAGGTATTAAAACGTCGTCAATATTGGTCTTATGGGCCTAATTG
GGTTTGGCATATCGACGGCTACGATAAACTCAAACCTTATGGCTTCCCAA
TTCATGGAGCAATAGATGGCTTTAGCCGTAGAATTATGTGGCTGGAAGTG
ACCTCGTCAAATAAAGAGCCCGAAATAATTTGTagcttttttttgaaatg
tattAAAACGATTTCTGGAACACCCCGTAAGATTGTTGGTGATAGAGGTA
CAGAAAATGTTCATGTGGCGGCTTCTCAGAGGTTCCTGAGAAGAAACGAC
CAAGACAATAATTCTGGCGAGGCAAGTTTTAAGTATGGCAAATCAGTTAC
CAATCAGCGAATTGAGTCATGGTGGGCGATGTTAAGACGTACATGCACGA
ATTGGTGGATCAACTATTTTAGAGATTTAATAGAAAATGATTTGTTTGAC
ACATCAAATAATGTTCACTGTGaatgtaccgggtgacccacgaaaaagtt
cagacgtttcccgacgtcttgaggccgaacaaatgtcccaaagtgcttgg
agttttgata Coding sequence (CDS) from alignment at sc0001746:26310..27369 >TCONS_00037958 ID=TCONS_00037958|Name=TCONS_00037958|organism=Clytia hemisphaerica|type=CDS|length=819bp|location=Sequence derived from alignment at sc0001746:26310..27369 (Clytia hemisphaerica)
atggcAGTTGACAGAGACTCTCTTGTCAGGGAATACTTTGATAGAGGATA
CGACTATGAGGAGATAATCACGACGCTTAGACAAGTACACTCAAAAATCA
TCAGCTTAAGGCAACTTCATAGGGTTCTTCGTAACCAAAATCTGTATCGA
AGAAAATATGGTTGTGATACTAGAGATGCCATATCATTTGTTCAGAGGCA
GTTGAGAAGCAGTGGTTCATCGTTAGGATACCGTTTAATGCACCAAAGAT
GTTTGCAAGCAGGTTATCGCACAACTAGGGAAAATATTCGTATCATGCTC
AAGCTTTTGGATCCTATTGGTGTTGAAGAACGAAGCAGAAAGGTATTAAA
ACGTCGTCAATATTGGTCTTATGGGCCTAATTGGGTTTGGCATATCGACG
GCTACGATAAACTCAAACCTTATGGCTTCCCAATTCATGGAGCAATAGAT
GGCTTTAGCCGTAGAATTATGTGGCTGGAAGTGACCTCGTCAAATAAAGA
GCCCGAAATAATTTGTagcttttttttgaaatgtattAAAACGATTTCTG
GAACACCCCGTAAGATTGTTGGTGATAGAGGTACAGAAAATGTTCATGTG
GCGGCTTCTCAGAGGTTCCTGAGAAGAAACGACCAAGACAATAATTCTGG
CGAGGCAAGTTTTAAGTATGGCAAATCAGTTACCAATCAGCGAATTGAGT
CATGGTGGGCGATGTTAAGACGTACATGCACGAATTGGTGGATCAACTAT
TTTAGAGATTTAATAGAAAATGATTTGTTTGACACATCAAATAATGTTCA
CTGTGaatgtaccgggtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037958-exon-sc0001746-1491911889:26310..27369 | TCONS_00037958-exon-sc0001746-1491911889:26310..27369 | Clytia hemisphaerica | exon |
| TCONS_00037958-exon-sc0001746-1510915933:26310..27369 | TCONS_00037958-exon-sc0001746-1510915933:26310..27369 | Clytia hemisphaerica | exon |
| TCONS_00037958-exon-sc0001746-1575043694:26310..27369 | TCONS_00037958-exon-sc0001746-1575043694:26310..27369 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001746 | supercontig | sc0001746:26310..27369 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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