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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037957 ID=TCONS_00037957|Name=TCONS_00037957|organism=Clytia hemisphaerica|type=transcript|length=2391bp
GAGAAGATTATCTACTAGATggaaccttttcaaaaagtttgtttaatcGA
GTCTGATCATTTCCTTTTATGTACAAGAAGATATCTTGTGTGTTAACGTT
TTAGTAGTTTTTGTGTATGCAGCTATATCGTATATTGCAATGAAATAGAG
AGAAAAAGGTGTGCTGATTCAAGAAATAGATAAAAATGTCTTGCCAATCA
ACTGCGACCTCTAATACTGCTGTATTGGTATTCAACTTTTTGATACCAAC
GTTGGCCATAATTTTCATGCAGATTTACTCCCGACTTAAGAAAGGGAAAT
TGACAGCACAAGCACCATTCCTGTTCCTGCAAGACAATGACCGAAAtcga
ttgatgacgtcattagcGTTTGGTCATCTTTCGCTGCGGATTACAATTCT
AATTATCGGAGATACCGGTACAACTGTCGGACTTACACTTTGCTCAAGCT
TGTCAGGCCCACCTGAACATCTTCTTTGTTCATTTTACTCAAAAATCCTG
ACAGCAACTTTGATTGGATTTTTATCTTTCCCGCTTTTTGCGTTGATTTC
ATCTCCGCATATACTTGTTTCATCGGCTGTTGGAATTGGATTTACTGTAT
GGGAGATTATCATTCTTGGACTACAGTTCGATTTTGGCGACGATTGTGAT
TTGAAAGCTGTATTACAACGGAACATTGCAATAATTGTGGTACCTAGTTT
CATCTTTCTTACTGTCATCTTGTTTGGTTTCGGATATCGCTTATATACGT
GCTTCAAAACTGGCTGTCATGAACTCCCAACAAACGAGAAAAGCGTGGTT
GATACACATCAAATTCtgtatttgaaaaatcttttgcaACGGACAAACGA
ACAGTCGCAGTTaactcattttcaaaaattgaaacatgtttTCAAACCGT
GGTTTAAATTTCCTGGTGAAATTCTTCAATGTATTGCTGTGATTTTCGTC
TTGCTGTATTTCACTTTGTTTATAGCACAGTCCATTGTTTATTTAACCTT
GTTTGAAAGTAGTTCTAACAAAGGCTTCGAAACAGTCTGGTATTTAGGGT
TGGTCATCAGTACTATCTTGTATCTGGTTATGGTGGTTCATTTTTTGTAC
TGTTACCAAAATGATACTCTGGCAATATACACAGGTAAACATAAACTGTA
CCAGAAAGATGATGGTTGCCATAATATCGCTTTGTACCATCGATTGGTGT
TTCCAGCATACTTAATCAGTGCAATGTTCATTGGTTTTATATCTTGTTTG
GTGATAATTGGCATCGTTGTTGTGATTATTTATCTCCTAGCAACTAGAGC
AACAGGAGCACTAGTCTTGATGATGCTTCGCTACATATTATCTCTCGTTG
GCACTGGTATCGTTTTTAAAATCATCCAACGCTTAAGCATCCGATATTAC
TTCTCCGATTTGCAATTATCAAAGATGCAAATCAATTTGAAGCATCCACG
TTTGTTTTATGTTCTATCCTTCTTTTTGTTCTTCGTGAATGTGTTCACGG
GTCTGATGTCACTGGTCAAACGTCTTTTATTcatcattttaagttttctg
tTATTCTATGGTCGCATTGATCGTAACCCAATGATGTTTTTCAAGAGTAT
GGATATATCGAATTCGTACAGCTCCTTTTTACGTGTGGAAAACGTCTTCA
AAAACCCAATTATGCGTTGCTTCTGTCAATTCCTCATGGAACCTCACATT
CGAAACATATCACAGCTTACGTCTCAAAAGCTCACCAGAAATGTGTGGGG
AAGCCCTTTGATTCGTGGATCCGACCGTTCGTTTCAACCAAATGCCGCGT
CGGGAAAGAGCGGTAAAATAGCGCGAAACCGTTGGTACGTTGCGTACACG
TTGCTACGCAACCCAGAATTGATCAATGATCGGTGTCAAGGCAGTTATCA
AGATAAAAGTCATATATCCTCAAAAATCGGAAGCATTAATGCTTGATAGT
AACATTCGAAAATCAAGATGAACTTTGATTACTTTCTGTGTGCAACAACA
AGAGAAAATGGAATTTCAATAGTTGAGACCATCATGGTTGAGAGAAGATC
TACGTAATTTTTTAAAAGGACATCCagaacttttgaagcctttggatgtt
ctgaGATTTCTGAGTTTTAAACCGAATAATGTTTATAAATTATatgttgt
tcttattttcatcgttttgtgagtatttttgtattTCCCGAAATAATATG
GTGTTGAGAGTTTGCAAAGCGTTCAAAtgttttcttaatattttgcccAT
TGAAGCATTGTGTTCTAATGtgcttatatagtttgttcttatgtaAAAAA
AGCGATAAAAACTATAGGATAAAAGAGGAATTTCCTTGATATAAGAACAT
TTGACCTTGAGAGTGTTTTTCCACAGACGGCTAAAGCTACG Run BLAST on NCBI protein sequence of TCONS_00037957-protein >TCONS_00037957-protein ID=TCONS_00037957-protein|Name=TCONS_00037957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp
MSCQSTATSNTAVLVFNFLIPTLAIIFMQIYSRLKKGKLTAQAPFLFLQD
NDRNRLMTSLAFGHLSLRITILIIGDTGTTVGLTLCSSLSGPPEHLLCSF
YSKILTATLIGFLSFPLFALISSPHILVSSAVGIGFTVWEIIILGLQFDF
GDDCDLKAVLQRNIAIIVVPSFIFLTVILFGFGYRLYTCFKTGCHELPTN
EKSVVDTHQILYLKNLLQRTNEQSQLTHFQKLKHVFKPWFKFPGEILQCI
AVIFVLLYFTLFIAQSIVYLTLFESSSNKGFETVWYLGLVISTILYLVMV
VHFLYCYQNDTLAIYTGKHKLYQKDDGCHNIALYHRLVFPAYLISAMFIG
FISCLVIIGIVVVIIYLLATRATGALVLMMLRYILSLVGTGIVFKIIQRL
SIRYYFSDLQLSKMQINLKHPRLFYVLSFFLFFVNVFTGLMSLVKRLLFI
ILSFLLFYGRIDRNPMMFFKSMDISNSYSSFLRVENVFKNPIMRCFCQFL
MEPHIRNISQLTSQKLTRNVWGSPLIRGSDRSFQPNAASGKSGKIARNRW
YVAYTLLRNPELINDRCQGSYQDKSHISSKIGSINA Run BLAST on NCBI transcript from alignment at sc0001746:3379..5769 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037957 ID=TCONS_00037957|Name=TCONS_00037957|organism=Clytia hemisphaerica|type=transcript|length=2391bp|location=Sequence derived from alignment at sc0001746:3379..5769 (Clytia hemisphaerica)
CGTAGCTTTAGCCGTCTGTGGAAAAACACTCTCAAGGTCAAATGTTCTTA
TATCAAGGAAATTCCTCTTTTATCCTATAGTTTTTATCGCTTTTTTtaca
taagaacaaactatataagcaCATTAGAACACAATGCTTCAATgggcaaa
atattaagaaaacaTTTGAACGCTTTGCAAACTCTCAACACCATATTATT
TCGGGAaatacaaaaatactcacaaaacgatgaaaataagaacaacatAT
AATTTATAAACATTATTCGGTTTAAAACTCAGAAATCtcagaacatccaa
aggcttcaaaagttctGGATGTCCTTTTAAAAAATTACGTAGATCTTCTC
TCAACCATGATGGTCTCAACTATTGAAATTCCATTTTCTCTTGTTGTTGC
ACACAGAAAGTAATCAAAGTTCATCTTGATTTTCGAATGTTACTATCAAG
CATTAATGCTTCCGATTTTTGAGGATATATGACTTTTATCTTGATAACTG
CCTTGACACCGATCATTGATCAATTCTGGGTTGCGTAGCAACGTGTACGC
AACGTACCAACGGTTTCGCGCTATTTTACCGCTCTTTCCCGACGCGGCAT
TTGGTTGAAACGAACGGTCGGATCCACGAATCAAAGGGCTTCCCCACACA
TTTCTGGTGAGCTTTTGAGACGTAAGCTGTGATATGTTTCGAATGTGAGG
TTCCATGAGGAATTGACAGAAGCAACGCATAATTGGGTTTTTGAAGACGT
TTTCCACACGTAAAAAGGAGCTGTACGAATTCGATATATCCATACTCTTG
AAAAACATCATTGGGTTACGATCAATGCGACCATAGAATAacagaaaact
taaaatgatgAATAAAAGACGTTTGACCAGTGACATCAGACCCGTGAACA
CATTCACGAAGAACAAAAAGAAGGATAGAACATAAAACAAACGTGGATGC
TTCAAATTGATTTGCATCTTTGATAATTGCAAATCGGAGAAGTAATATCG
GATGCTTAAGCGTTGGATGATTTTAAAAACGATACCAGTGCCAACGAGAG
ATAATATGTAGCGAAGCATCATCAAGACTAGTGCTCCTGTTGCTCTAGTT
GCTAGGAGATAAATAATCACAACAACGATGCCAATTATCACCAAACAAGA
TATAAAACCAATGAACATTGCACTGATTAAGTATGCTGGAAACACCAATC
GATGGTACAAAGCGATATTATGGCAACCATCATCTTTCTGGTACAGTTTA
TGTTTACCTGTGTATATTGCCAGAGTATCATTTTGGTAACAGTACAAAAA
ATGAACCACCATAACCAGATACAAGATAGTACTGATGACCAACCCTAAAT
ACCAGACTGTTTCGAAGCCTTTGTTAGAACTACTTTCAAACAAGGTTAAA
TAAACAATGGACTGTGCTATAAACAAAGTGAAATACAGCAAGACGAAAAT
CACAGCAATACATTGAAGAATTTCACCAGGAAATTTAAACCACGGTTTGA
aaacatgtttcaatttttgaaaatgagttAACTGCGACTGTTCGTTTGTC
CGTtgcaaaagatttttcaaatacaGAATTTGATGTGTATCAACCACGCT
TTTCTCGTTTGTTGGGAGTTCATGACAGCCAGTTTTGAAGCACGTATATA
AGCGATATCCGAAACCAAACAAGATGACAGTAAGAAAGATGAAACTAGGT
ACCACAATTATTGCAATGTTCCGTTGTAATACAGCTTTCAAATCACAATC
GTCGCCAAAATCGAACTGTAGTCCAAGAATGATAATCTCCCATACAGTAA
ATCCAATTCCAACAGCCGATGAAACAAGTATATGCGGAGATGAAATCAAC
GCAAAAAGCGGGAAAGATAAAAATCCAATCAAAGTTGCTGTCAGGATTTT
TGAGTAAAATGAACAAAGAAGATGTTCAGGTGGGCCTGACAAGCTTGAGC
AAAGTGTAAGTCCGACAGTTGTACCGGTATCTCCGATAATTAGAATTGTA
ATCCGCAGCGAAAGATGACCAAACgctaatgacgtcatcaatcgaTTTCG
GTCATTGTCTTGCAGGAACAGGAATGGTGCTTGTGCTGTCAATTTCCCTT
TCTTAAGTCGGGAGTAAATCTGCATGAAAATTATGGCCAACGTTGGTATC
AAAAAGTTGAATACCAATACAGCAGTATTAGAGGTCGCAGTTGATTGGCA
AGACATTTTTATCTATTTCTTGAATCAGCACACCTTTTTCTCTCTATTTC
ATTGCAATATACGATATAGCTGCATACACAAAAACTACTAAAACGTTAAC
ACACAAGATATCTTCTTGTACATAAAAGGAAATGATCAGACTCgattaaa
caaactttttgaaaaggttccATCTAGTAGATAATCTTCTC Coding sequence (CDS) from alignment at sc0001746:3379..5769 >TCONS_00037957 ID=TCONS_00037957|Name=TCONS_00037957|organism=Clytia hemisphaerica|type=CDS|length=1761bp|location=Sequence derived from alignment at sc0001746:3379..5769 (Clytia hemisphaerica)
TCAAGCATTAATGCTTCCGATTTTTGAGGATATATGACTTTTATCTTGAT
AACTGCCTTGACACCGATCATTGATCAATTCTGGGTTGCGTAGCAACGTG
TACGCAACGTACCAACGGTTTCGCGCTATTTTACCGCTCTTTCCCGACGC
GGCATTTGGTTGAAACGAACGGTCGGATCCACGAATCAAAGGGCTTCCCC
ACACATTTCTGGTGAGCTTTTGAGACGTAAGCTGTGATATGTTTCGAATG
TGAGGTTCCATGAGGAATTGACAGAAGCAACGCATAATTGGGTTTTTGAA
GACGTTTTCCACACGTAAAAAGGAGCTGTACGAATTCGATATATCCATAC
TCTTGAAAAACATCATTGGGTTACGATCAATGCGACCATAGAATAacaga
aaacttaaaatgatgAATAAAAGACGTTTGACCAGTGACATCAGACCCGT
GAACACATTCACGAAGAACAAAAAGAAGGATAGAACATAAAACAAACGTG
GATGCTTCAAATTGATTTGCATCTTTGATAATTGCAAATCGGAGAAGTAA
TATCGGATGCTTAAGCGTTGGATGATTTTAAAAACGATACCAGTGCCAAC
GAGAGATAATATGTAGCGAAGCATCATCAAGACTAGTGCTCCTGTTGCTC
TAGTTGCTAGGAGATAAATAATCACAACAACGATGCCAATTATCACCAAA
CAAGATATAAAACCAATGAACATTGCACTGATTAAGTATGCTGGAAACAC
CAATCGATGGTACAAAGCGATATTATGGCAACCATCATCTTTCTGGTACA
GTTTATGTTTACCTGTGTATATTGCCAGAGTATCATTTTGGTAACAGTAC
AAAAAATGAACCACCATAACCAGATACAAGATAGTACTGATGACCAACCC
TAAATACCAGACTGTTTCGAAGCCTTTGTTAGAACTACTTTCAAACAAGG
TTAAATAAACAATGGACTGTGCTATAAACAAAGTGAAATACAGCAAGACG
AAAATCACAGCAATACATTGAAGAATTTCACCAGGAAATTTAAACCACGG
TTTGAaaacatgtttcaatttttgaaaatgagttAACTGCGACTGTTCGT
TTGTCCGTtgcaaaagatttttcaaatacaGAATTTGATGTGTATCAACC
ACGCTTTTCTCGTTTGTTGGGAGTTCATGACAGCCAGTTTTGAAGCACGT
ATATAAGCGATATCCGAAACCAAACAAGATGACAGTAAGAAAGATGAAAC
TAGGTACCACAATTATTGCAATGTTCCGTTGTAATACAGCTTTCAAATCA
CAATCGTCGCCAAAATCGAACTGTAGTCCAAGAATGATAATCTCCCATAC
AGTAAATCCAATTCCAACAGCCGATGAAACAAGTATATGCGGAGATGAAA
TCAACGCAAAAAGCGGGAAAGATAAAAATCCAATCAAAGTTGCTGTCAGG
ATTTTTGAGTAAAATGAACAAAGAAGATGTTCAGGTGGGCCTGACAAGCT
TGAGCAAAGTGTAAGTCCGACAGTTGTACCGGTATCTCCGATAATTAGAA
TTGTAATCCGCAGCGAAAGATGACCAAACgctaatgacgtcatcaatcga
TTTCGGTCATTGTCTTGCAGGAACAGGAATGGTGCTTGTGCTGTCAATTT
CCCTTTCTTAAGTCGGGAGTAAATCTGCATGAAAATTATGGCCAACGTTG
GTATCAAAAAGTTGAATACCAATACAGCAGTATTAGAGGTCGCAGTTGAT
TGGCAAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037957-exon-sc0001746-1491911889:3379..5769 | TCONS_00037957-exon-sc0001746-1491911889:3379..5769 | Clytia hemisphaerica | exon |
| TCONS_00037957-exon-sc0001746-1510915933:3379..5769 | TCONS_00037957-exon-sc0001746-1510915933:3379..5769 | Clytia hemisphaerica | exon |
| TCONS_00037957-exon-sc0001746-1575043694:3379..5769 | TCONS_00037957-exon-sc0001746-1575043694:3379..5769 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001746 | supercontig | sc0001746:3379..5769 . |
Blast
The following BLAST results are available for this feature:
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