TCONS_00037948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037948
Unique NameTCONS_00037948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037948 ID=TCONS_00037948|Name=TCONS_00037948|organism=Clytia hemisphaerica|type=transcript|length=483bp
GCATGATGAACGATTTCTGAGATTGTTCTTCTTGTTATTCATAGATTCTT
GATGACTAGTTGTAATGCCACATCCTTGTTGACAAAGCTCAATGTCATGA
AAACTACACAAGGGTGATTTATGTGGCTTAGATCGCGCATGGAATCTATC
ACCACAAACATATCTTTGTTTGGTTCTGGTGACAGGATGTTCAAATTCTT
TACATCCATCATACTTTTCACCCTCAGTTTTGAATTCTGATGGAACCAAC
GCTGGAACATTTACTTCAGTATTAGGCTTTGTGTCAATTTCAGGTTTCTG
AAAACAACCGTTGAGGTCACCCCAATACTGCTTCATGAGGTCTGGTTCTC
TATTGTTCAGATGTTGCGTCAAGGTACAAGGTGTGTCACAAATAAACAAG
ACTGGAGGGTACTTTAATGAAAGCCACAGATCAGCTGTATCTCTCACTGA
TTCACAAAGTACCATAAATTTTGAGCAAACAGT
Run BLAST on NCBI

transcript from alignment at sc0001745:3402..4763-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037948 ID=TCONS_00037948|Name=TCONS_00037948|organism=Clytia hemisphaerica|type=transcript|length=1362bp|location=Sequence derived from alignment at sc0001745:3402..4763- (Clytia hemisphaerica)
GCATGATGAACGATTTCTGAGATTGTTCTTCTTGTTATTCATAGATTCTT
GATGACTAGTTGTAATGCCACATCCTTGTTGACAAAGCTCAATGTCATGA
AAACTACACAAGGGTGATTTATGTGGCTTAGATCGCGCATGGAATCTATC
ACCACAAACATATCTTTGTTTGGTTCTGGTGACAGGATGTTCAAATTCTT
TACATCCATCATACTTTTCACCCTCAGTTTTGAATTCTGATGGAACCAAC
GCTGGAACATTTACTTCCTACAAATAAAGTGAGGTAAATGAACTGACTTT
ATATTGAGTGCACGTATACCAGGTGCAATAACTAAAATTCTAAAGGCTAA
CTGAAAACAGCTCAAAAGTACTGGGTGTTTCAGAAAAAATGTACAGATTT
GAGGTTAGTTTGTGAGAAAACTGAAAGTGTTATAAATCCAAACATTTTGT
CATTCAAATGAGGAAAGACTAACCTGGACTAACTTGAATTTCGAACTATC
ATACGTAAATTTGTGTTCAATAGAACTCTTTCGTGTCATTTTTGTGGAAA
AAAGAGGGGATTAAATGCAAAAACACAACAAAAACATATTCTGTTCTTGT
ACGAAAGAGAAAAAATAGTAAAACAATTTTGTTTACAAGCAATAGAGTAG
AGTTGAGAGTCCAACCCTGAGAATGGCCAAAAAATTAATAAACTTTGCAG
NAGAGCAGAGTTGAGAGTCTAGCCCTGTGGCCAAAAAATTAATAAACTTT
GCAACCTAGCCTTGAAACTCAACTGAGCAGAGACCGCCAAAATATTTGAA
GTTGCTTGCTAGGCATTTTTTGCTCAAAATTCAAAAAGCACTTTTTTGCT
TGAAATCTGGAAAACCCTTAGCAACTCCAGCCCTGAGCAGAAAATTGGGG
TTACTTATAAAAGAGAATTTTCGTAACTTTCTTTGTAATCATTGAACACA
TGAAACCAAATTTAACCTTTCTTCTTTCTGAGGTGAAAAACTTTGGTTTA
ATATATTATTTTTAGTTTTCTCAATCTTAATTCAAACTTGTACACTTTTT
TTGAAACACCTGGTATAAAAGAAAACCAATCAAAGTATCACTTGCAGTAT
TAGGCTTTGTGTCAATTTCAGGTTTCTGAAAACAACCGTTGAGGTCACCC
ATGNGCTTTGTGTCAATTTCAGGTTTCTGAAAACAACCGTTGAGGTCACC
CCAATACTGCTTCATGAGGTCTGGTTCTCTATTGTTCAGATGTTGCGTCA
AGGTACAAGGTGTGTCACAAATAAACAAGACTGGAGGGTACTTTAATGAA
AGCCACAGATCAGCTGTATCTCTCACTGATTCACAAAGTACCATAAATTT
TGAGCAAACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022634XLOC_022634Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037948-exon-sc0001745-1575043694:4497..4763TCONS_00037948-exon-sc0001745-1575043694:4497..4763Clytia hemisphaericaexon
TCONS_00037948-exon-sc0001745-1575043694:3643..3668TCONS_00037948-exon-sc0001745-1575043694:3643..3668Clytia hemisphaericaexon
TCONS_00037948-exon-sc0001745-1575043694:3402..3591TCONS_00037948-exon-sc0001745-1575043694:3402..3591Clytia hemisphaericaexon
TCONS_00037948-exon-sc0001745-1510915933:4497..4763TCONS_00037948-exon-sc0001745-1510915933:4497..4763Clytia hemisphaericaexon
TCONS_00037948-exon-sc0001745-1510915933:3643..3668TCONS_00037948-exon-sc0001745-1510915933:3643..3668Clytia hemisphaericaexon
TCONS_00037948-exon-sc0001745-1510915933:3402..3591TCONS_00037948-exon-sc0001745-1510915933:3402..3591Clytia hemisphaericaexon
TCONS_00037948-exon-sc0001745-1491911889:4497..4763TCONS_00037948-exon-sc0001745-1491911889:4497..4763Clytia hemisphaericaexon
TCONS_00037948-exon-sc0001745-1491911889:3643..3668TCONS_00037948-exon-sc0001745-1491911889:3643..3668Clytia hemisphaericaexon
TCONS_00037948-exon-sc0001745-1491911889:3402..3591TCONS_00037948-exon-sc0001745-1491911889:3402..3591Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001745supercontigsc0001745:3402..4763 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15622	1.00014	0.385932	0.319537	16.1306	19.1516	0.00013846	20.0844	10.9747	14.0513	10.6428	7.32461e-08	8.35364	10.6851	2.27945	2.5576	1.25316	2.89637	1.44315	1.39154	1.51843	1.19192	1.69095	1.52039	2.00509e-09	0.00676856	1.23441	0.751059	0.644242	0.288595
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top