TCONS_00037947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037947
Unique NameTCONS_00037947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037947 ID=TCONS_00037947|Name=TCONS_00037947|organism=Clytia hemisphaerica|type=transcript|length=301bp
tttagttttctcaatcttaattcaaacttgtacactttttttgaaacacc
TGGTATAAAAGAAAACCAATCAAAGTATCACTTGCAGTATTAGGCTTTGT
GTCAATTTCAGGTTTCTGAAAACAACCGTTGAGGTCACCCCAATACTGCT
TCATGAGGTCTGGTTCTCTATTGTTCAGATGTTGCGTCAAGGTACAAGGT
GTGTCACAAATAAACAAGACTGGAGGGTACTTTAATGAAAGCCACAGATC
AGCTGTATCTCTCACTGATTCACAAAGTACCATAAATTTTGAGCAAACAG
T
Run BLAST on NCBI

transcript from alignment at sc0001745:3402..3753-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037947 ID=TCONS_00037947|Name=TCONS_00037947|organism=Clytia hemisphaerica|type=transcript|length=352bp|location=Sequence derived from alignment at sc0001745:3402..3753- (Clytia hemisphaerica)
TTTAGTTTTCTCAATCTTAATTCAAACTTGTACACTTTTTTTGAAACACC
TGGTATAAAAGAAAACCAATCAAAGTATCACTTGCAGTATTAGGCTTTGT
GTCAATTTCAGGTTTCTGAAAACAACCGTTGAGGTCACCCATGNGCTTTG
TGTCAATTTCAGGTTTCTGAAAACAACCGTTGAGGTCACCCCAATACTGC
TTCATGAGGTCTGGTTCTCTATTGTTCAGATGTTGCGTCAAGGTACAAGG
TGTGTCACAAATAAACAAGACTGGAGGGTACTTTAATGAAAGCCACAGAT
CAGCTGTATCTCTCACTGATTCACAAAGTACCATAAATTTTGAGCAAACA
GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022634XLOC_022634Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037947-exon-sc0001745-1575043694:3621..3753TCONS_00037947-exon-sc0001745-1575043694:3621..3753Clytia hemisphaericaexon
TCONS_00037947-exon-sc0001745-1575043694:3402..3569TCONS_00037947-exon-sc0001745-1575043694:3402..3569Clytia hemisphaericaexon
TCONS_00037947-exon-sc0001745-1510915933:3621..3753TCONS_00037947-exon-sc0001745-1510915933:3621..3753Clytia hemisphaericaexon
TCONS_00037947-exon-sc0001745-1510915933:3402..3569TCONS_00037947-exon-sc0001745-1510915933:3402..3569Clytia hemisphaericaexon
TCONS_00037947-exon-sc0001745-1491911889:3621..3753TCONS_00037947-exon-sc0001745-1491911889:3621..3753Clytia hemisphaericaexon
TCONS_00037947-exon-sc0001745-1491911889:3402..3569TCONS_00037947-exon-sc0001745-1491911889:3402..3569Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001745supercontigsc0001745:3402..3753 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15335	0.375581	0.436085	0.63929	2.82684	1.2313	0.49517	1.9352	0.490473	1.90682	5.43346	0.449486	1.0924	0	0	0	0	0	0	0	0.576352	0.544907	0	0	0.827034	2.95243	0	0	0.205511	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top