TCONS_00037942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037942
Unique NameTCONS_00037942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length744

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037942 ID=TCONS_00037942|Name=TCONS_00037942|organism=Clytia hemisphaerica|type=transcript|length=744bp
TGACCTCAAGTCCTTCGAGTGTGAACTTCGACGCCGTGGACAATGTAAGG
CTAAAGTTAAAGTGGACATTCTGGGAGATATTGTTGAAAGACTCAATGAA
CATACCCATCAACCGTCTGCAACTAAAGTTGAAGTAACTAAAATAAAAGT
ATCGCTTAAAGAACAGGCTGCAACTTCACACGATTCAACCCAAAACATCG
TGGGAAATGAGATAGCAGCTGCCTCGGCGAGCGCTATTGTAAATTTACCA
CCGGTCAATCACTTGAAAAGAACAATGAGAAACCAACGTGGAAATGATTT
ACCACCGAACCCAATCAATAGAGCCGGTATTCCAAACCTTCCTCAAGAAT
TTCAGCGTACGATGAATGATGAAAGATTTCTCTTGTTTGACTCTGGTGTT
GGTGACGATCGTCGAATTATTCTTTTTTGTACTGACAGAGCCCTTGAATT
ACTACAACGATCAAGAGATTGGTACGCGGACGGGACTTTTAGAGTATGTC
CTGAGATTTTTTTCCAGGTTTATACAATTCATGCCCGTGTAAATGAAAGG
ACAATTCCTTGTGTATTTTCACTTTTACCAAACAAAACCGAAGACACCTA
TGGAAGGATGATTGATGCGCTGTTGAATTTTTTACCAAACGGAACGGCTC
CGGACACAATTTTGTTTGACTTTGAAAGAGCAGCGATTAATGTGGCATTG
AGATCATTCCCAAACGTAGTGGTAAATGGttgttttttccattt
Run BLAST on NCBI

protein sequence of TCONS_00037942-protein

>TCONS_00037942-protein ID=TCONS_00037942-protein|Name=TCONS_00037942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
DLKSFECELRRRGQCKAKVKVDILGDIVERLNEHTHQPSATKVEVTKIKV
SLKEQAATSHDSTQNIVGNEIAAASASAIVNLPPVNHLKRTMRNQRGNDL
PPNPINRAGIPNLPQEFQRTMNDERFLLFDSGVGDDRRIILFCTDRALEL
LQRSRDWYADGTFRVCPEIFFQVYTIHARVNERTIPCVFSLLPNKTEDTY
GRMIDALLNFLPNGTAPDTILFDFERAAINVALRSFPNVVVNGCFFH
Run BLAST on NCBI

transcript from alignment at sc0001744:27401..28144

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037942 ID=TCONS_00037942|Name=TCONS_00037942|organism=Clytia hemisphaerica|type=transcript|length=744bp|location=Sequence derived from alignment at sc0001744:27401..28144 (Clytia hemisphaerica)
aaatggaaaaaacaaCCATTTACCACTACGTTTGGGAATGATCTCAATGC
CACATTAATCGCTGCTCTTTCAAAGTCAAACAAAATTGTGTCCGGAGCCG
TTCCGTTTGGTAAAAAATTCAACAGCGCATCAATCATCCTTCCATAGGTG
TCTTCGGTTTTGTTTGGTAAAAGTGAAAATACACAAGGAATTGTCCTTTC
ATTTACACGGGCATGAATTGTATAAACCTGGAAAAAAATCTCAGGACATA
CTCTAAAAGTCCCGTCCGCGTACCAATCTCTTGATCGTTGTAGTAATTCA
AGGGCTCTGTCAGTACAAAAAAGAATAATTCGACGATCGTCACCAACACC
AGAGTCAAACAAGAGAAATCTTTCATCATTCATCGTACGCTGAAATTCTT
GAGGAAGGTTTGGAATACCGGCTCTATTGATTGGGTTCGGTGGTAAATCA
TTTCCACGTTGGTTTCTCATTGTTCTTTTCAAGTGATTGACCGGTGGTAA
ATTTACAATAGCGCTCGCCGAGGCAGCTGCTATCTCATTTCCCACGATGT
TTTGGGTTGAATCGTGTGAAGTTGCAGCCTGTTCTTTAAGCGATACTTTT
ATTTTAGTTACTTCAACTTTAGTTGCAGACGGTTGATGGGTATGTTCATT
GAGTCTTTCAACAATATCTCCCAGAATGTCCACTTTAACTTTAGCCTTAC
ATTGTCCACGGCGTCGAAGTTCACACTCGAAGGACTTGAGGTCA

Coding sequence (CDS) from alignment at sc0001744:27401..28144

>TCONS_00037942 ID=TCONS_00037942|Name=TCONS_00037942|organism=Clytia hemisphaerica|type=CDS|length=741bp|location=Sequence derived from alignment at sc0001744:27401..28144 (Clytia hemisphaerica)
atggaaaaaacaaCCATTTACCACTACGTTTGGGAATGATCTCAATGCCA
CATTAATCGCTGCTCTTTCAAAGTCAAACAAAATTGTGTCCGGAGCCGTT
CCGTTTGGTAAAAAATTCAACAGCGCATCAATCATCCTTCCATAGGTGTC
TTCGGTTTTGTTTGGTAAAAGTGAAAATACACAAGGAATTGTCCTTTCAT
TTACACGGGCATGAATTGTATAAACCTGGAAAAAAATCTCAGGACATACT
CTAAAAGTCCCGTCCGCGTACCAATCTCTTGATCGTTGTAGTAATTCAAG
GGCTCTGTCAGTACAAAAAAGAATAATTCGACGATCGTCACCAACACCAG
AGTCAAACAAGAGAAATCTTTCATCATTCATCGTACGCTGAAATTCTTGA
GGAAGGTTTGGAATACCGGCTCTATTGATTGGGTTCGGTGGTAAATCATT
TCCACGTTGGTTTCTCATTGTTCTTTTCAAGTGATTGACCGGTGGTAAAT
TTACAATAGCGCTCGCCGAGGCAGCTGCTATCTCATTTCCCACGATGTTT
TGGGTTGAATCGTGTGAAGTTGCAGCCTGTTCTTTAAGCGATACTTTTAT
TTTAGTTACTTCAACTTTAGTTGCAGACGGTTGATGGGTATGTTCATTGA
GTCTTTCAACAATATCTCCCAGAATGTCCACTTTAACTTTAGCCTTACAT
TGTCCACGGCGTCGAAGTTCACACTCGAAGGACTTGAGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022629XLOC_022629Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037942-proteinTCONS_00037942-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037942-exon-sc0001744-1491911889:27401..28144TCONS_00037942-exon-sc0001744-1491911889:27401..28144Clytia hemisphaericaexon
TCONS_00037942-exon-sc0001744-1510915933:27401..28144TCONS_00037942-exon-sc0001744-1510915933:27401..28144Clytia hemisphaericaexon
TCONS_00037942-exon-sc0001744-1575043694:27401..28144TCONS_00037942-exon-sc0001744-1575043694:27401..28144Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001744supercontigsc0001744:27401..28144 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.132627	0.129332	0.0750836	0.0734576	0.625993	0.353334	0.511539	0.159632	0.167643	0.553743	0.268738	0.0883289	0.352824	0.0916029	0.07531	0.0808192	0.199125	0	0.634435	0	0.0641157	0.0938202	0.0760338	0	1.06797	0.127085	0.272787	0.0970419	0.220809	0.0749897
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018289MULE_transposase_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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