TCONS_00037939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037939
Unique NameTCONS_00037939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037939 ID=TCONS_00037939|Name=TCONS_00037939|organism=Clytia hemisphaerica|type=transcript|length=574bp
AGCCGGAGCCATGCAAGCCAAGAAGAAAACAGAAACAGTTCACAGACATG
TGCCAGACAACATTATCAGTGGAAGCAGATTGACCAAAATAGTCACAAAG
ATACTGGAGAAAGGCTGCAAGATGTGCATAGTCGAGATACATGATCAGCA
ACAACATTTTGGACTCCCGGcacatgaaaaactttaaggCGAAAGTTATA
GCTGGCAGAACACCAGAACAGACGTCTGATGTAAGTCATCATGAGCGGGT
TGCGAGATGATCCCTTATTCAACATCCCAACTGCAGCCGTGTTGTCACAG
TAAATATGGACAACCTTATTACACAGGTAAGGTGCCCAGCGTTCCAAGGC
AAAAACAATGCAAAGCGCTTCCTTGTAGTTGATGTGCAAGCCTGCCAGGG
CAGGAGCATCAACCAACAAGTTAGAATAGAACCagtcattttcaaaaact
gctccGATGCCAGTTGTACAGGCATCCGTGTGGATGTTGGTAACAGGTCT
AGTGTCATGAAAGGAACACTGACCAttaaaaatctcaagaaaatctaACC
ACCAAGAAATGTCCTTAAAAAACT
Run BLAST on NCBI

protein sequence of TCONS_00037939-protein

>TCONS_00037939-protein ID=TCONS_00037939-protein|Name=TCONS_00037939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
FFKDISWWLDFLEIFNGQCSFHDTRPVTNIHTDACTTGIGAVFENDWFYS
NLLVDAPALAGLHINYKEALCIVFALERWAPYLCNKVVHIYCDNTAAVGM
LNKGSSRNPLMMTYIRRLFWCSASYNFRLKVFHVPGVQNVVADHVSRLCT
SCSLSPVSL
Run BLAST on NCBI

transcript from alignment at sc0001741:10867..11440

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037939 ID=TCONS_00037939|Name=TCONS_00037939|organism=Clytia hemisphaerica|type=transcript|length=574bp|location=Sequence derived from alignment at sc0001741:10867..11440 (Clytia hemisphaerica)
AGTTTTTTAAGGACATTTCTTGGTGGTtagattttcttgagatttttaaT
GGTCAGTGTTCCTTTCATGACACTAGACCTGTTACCAACATCCACACGGA
TGCCTGTACAACTGGCATCggagcagtttttgaaaatgactGGTTCTATT
CTAACTTGTTGGTTGATGCTCCTGCCCTGGCAGGCTTGCACATCAACTAC
AAGGAAGCGCTTTGCATTGTTTTTGCCTTGGAACGCTGGGCACCTTACCT
GTGTAATAAGGTTGTCCATATTTACTGTGACAACACGGCTGCAGTTGGGA
TGTTGAATAAGGGATCATCTCGCAACCCGCTCATGATGACTTACATCAGA
CGTCTGTTCTGGTGTTCTGCCAGCTATAACTTTCGccttaaagtttttca
tgtgCCGGGAGTCCAAAATGTTGTTGCTGATCATGTATCTCGACTATGCA
CATCTTGCAGCCTTTCTCCAGTATCTTTGTGACTATTTTGGTCAATCTGC
TTCCACTGATAATGTTGTCTGGCACATGTCTGTGAACTGTTTCTGTTTTC
TTCTTGGCTTGCATGGCTCCGGCT

Coding sequence (CDS) from alignment at sc0001741:10867..11440

>TCONS_00037939 ID=TCONS_00037939|Name=TCONS_00037939|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0001741:10867..11440 (Clytia hemisphaerica)
TTTTTTAAGGACATTTCTTGGTGGTtagattttcttgagatttttaaTGG
TCAGTGTTCCTTTCATGACACTAGACCTGTTACCAACATCCACACGGATG
CCTGTACAACTGGCATCggagcagtttttgaaaatgactGGTTCTATTCT
AACTTGTTGGTTGATGCTCCTGCCCTGGCAGGCTTGCACATCAACTACAA
GGAAGCGCTTTGCATTGTTTTTGCCTTGGAACGCTGGGCACCTTACCTGT
GTAATAAGGTTGTCCATATTTACTGTGACAACACGGCTGCAGTTGGGATG
TTGAATAAGGGATCATCTCGCAACCCGCTCATGATGACTTACATCAGACG
TCTGTTCTGGTGTTCTGCCAGCTATAACTTTCGccttaaagtttttcatg
tgCCGGGAGTCCAAAATGTTGTTGCTGATCATGTATCTCGACTATGCACA
TCTTGCAGCCTTTCTCCAGTATCTTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022626XLOC_022626Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037939-proteinTCONS_00037939-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037939-exon-sc0001741-1491911889:10867..11440TCONS_00037939-exon-sc0001741-1491911889:10867..11440Clytia hemisphaericaexon
TCONS_00037939-exon-sc0001741-1510915933:10867..11440TCONS_00037939-exon-sc0001741-1510915933:10867..11440Clytia hemisphaericaexon
TCONS_00037939-exon-sc0001741-1575043694:10867..11440TCONS_00037939-exon-sc0001741-1575043694:10867..11440Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001741supercontigsc0001741:10867..11440 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.54105	1.41892	0.183488	0.778402	0	1.34465	1.00193	1.28649	0.650852	2.05803	0.323953	0.736002	0.594205	0.401129	0.939045	0.8584	0.755301	0.880852	0.418954	0.463071	0.411477	0.612747	0	0.135983	1.58073	0.524522	0.179511	0.554318	0	0.262908
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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