TCONS_00037936 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037936
Unique NameTCONS_00037936
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037936 ID=TCONS_00037936|Name=TCONS_00037936|organism=Clytia hemisphaerica|type=transcript|length=456bp
AAACAAACTCTATCAGAATTTATTGAAGAACAAATAAATACTGATCCACA
AATCACAATTCGTTGTAAAGCTTTTCGACCAAAATCGATCTGGAAATTTT
GGCAATCTAAAGAAGTGATTGGTAATGATGCTAAGATATTTCTCGACTAC
GAAAATTGTATTGATTTGACTGATCAAAGCTCTCTTGAAGGTTACAAAAA
AACATGGCAAGTAATTATagactttaaaattgattttgaagagCAAATAG
AGACACTATATTTTCGAACGAGCCAACAATTCATTGATGATTTCCGAAAA
AGCTTACCGCAGGAGTACCAAGAAGACTCTGAGATTGCAGTCAAATACGA
TATCACATTCAGCAGACAAAATAAGACTACTgtaatttgtttaaaaaatg
aatcTTTGGAaatgtttttctggattttagGTATTCCAGGACTTATGTTG
GAAGCT
Run BLAST on NCBI

protein sequence of TCONS_00037936-protein

>TCONS_00037936-protein ID=TCONS_00037936-protein|Name=TCONS_00037936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
KQTLSEFIEEQINTDPQITIRCKAFRPKSIWKFWQSKEVIGNDAKIFLDY
ENCIDLTDQSSLEGYKKTWQVIIDFKIDFEEQIETLYFRTSQQFIDDFRK
SLPQEYQEDSEIAVKYDITFSRQNKTTVICLKNESLEMFFWILGIPGLML
EA
Run BLAST on NCBI

transcript from alignment at sc0001738:40379..40834

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037936 ID=TCONS_00037936|Name=TCONS_00037936|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at sc0001738:40379..40834 (Clytia hemisphaerica)
AGCTTCCAACATAAGTCCTGGAATACctaaaatccagaaaaacattTCCA
AAgattcattttttaaacaaattacAGTAGTCTTATTTTGTCTGCTGAAT
GTGATATCGTATTTGACTGCAATCTCAGAGTCTTCTTGGTACTCCTGCGG
TAAGCTTTTTCGGAAATCATCAATGAATTGTTGGCTCGTTCGAAAATATA
GTGTCTCTATTTGctcttcaaaatcaattttaaagtctATAATTACTTGC
CATGTTTTTTTGTAACCTTCAAGAGAGCTTTGATCAGTCAAATCAATACA
ATTTTCGTAGTCGAGAAATATCTTAGCATCATTACCAATCACTTCTTTAG
ATTGCCAAAATTTCCAGATCGATTTTGGTCGAAAAGCTTTACAACGAATT
GTGATTTGTGGATCAGTATTTATTTGTTCTTCAATAAATTCTGATAGAGT
TTGTTT

Coding sequence (CDS) from alignment at sc0001738:40379..40834

>TCONS_00037936 ID=TCONS_00037936|Name=TCONS_00037936|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0001738:40379..40834 (Clytia hemisphaerica)
AGCTTCCAACATAAGTCCTGGAATACctaaaatccagaaaaacattTCCA
AAgattcattttttaaacaaattacAGTAGTCTTATTTTGTCTGCTGAAT
GTGATATCGTATTTGACTGCAATCTCAGAGTCTTCTTGGTACTCCTGCGG
TAAGCTTTTTCGGAAATCATCAATGAATTGTTGGCTCGTTCGAAAATATA
GTGTCTCTATTTGctcttcaaaatcaattttaaagtctATAATTACTTGC
CATGTTTTTTTGTAACCTTCAAGAGAGCTTTGATCAGTCAAATCAATACA
ATTTTCGTAGTCGAGAAATATCTTAGCATCATTACCAATCACTTCTTTAG
ATTGCCAAAATTTCCAGATCGATTTTGGTCGAAAAGCTTTACAACGAATT
GTGATTTGTGGATCAGTATTTATTTGTTCTTCAATAAATTCTGATAGAGT
TTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022623XLOC_022623Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037936-exon-sc0001738-1491911889:40379..40834TCONS_00037936-exon-sc0001738-1491911889:40379..40834Clytia hemisphaericaexon
TCONS_00037936-exon-sc0001738-1510915933:40379..40834TCONS_00037936-exon-sc0001738-1510915933:40379..40834Clytia hemisphaericaexon
TCONS_00037936-exon-sc0001738-1575043694:40379..40834TCONS_00037936-exon-sc0001738-1575043694:40379..40834Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037936-proteinTCONS_00037936-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001738supercontigsc0001738:40379..40834 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.195598	0	0	0	0.172881	0.121038	0.25644	0	0	0.624012	2.15382	1.9044	1.9082	0.194448	0.294665	0.186064	0	1.81521	1.81306	1.69436	1.77867	0	0	1.28678	2.39375	1.23222	0.751655
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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