TCONS_00037922 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037922
Unique NameTCONS_00037922
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037922 ID=TCONS_00037922|Name=TCONS_00037922|organism=Clytia hemisphaerica|type=transcript|length=1505bp
aattggaGTTATTCATAACTCAGGTTAATTGAGATAGCGGTGTTATTGTC
TTCGGTCCCGTAACCTTTATGCAGCGCCAGTTCTATCTATATTACTTTTC
GTGTGAAATAGCGCCCCATTGGTACATTTCTACTTTGCGGTTTTGTGAAC
TTCCTCTTTCACTGTCTGTTATCTGAGCTGTTCAGACATAATTTCCAGAT
TGTTATCATTTTATATCTTGGAATATTTTTCTTTTCATTATGATAAACTT
CACAATCAAATGGCTTTTACTTTCAACTGTTTGGTTATCATTTGATTTCA
TCTCTTGTGTCAAGAGAAAAGCCACCGATCCAGTTGATCGACAAAGAAAC
AACAGTCCTGTCGTAACTGATGATCCTGCCATTATCATTGCAATTGACCC
ACAACAACGTTCCCTTGAACAGTGGAAAACATTTACCAGGGAGGCTTTGG
TTTTGTACGCCAATGCTAATAATATCCAGGCCACTGGAACTCATGAGCAG
CTTGCTTCTGCCCTTTTCGAACATTTTCAGTCGTCGCTTTCGAGCACGGC
TTCAAGTGCACCCACCACCAGCGGATCAAGTTCATCTACAACAGCCACAA
CTGCTTCATCAACATCTCAAACTACTTCTGTTACTCAGATGACTGCACCA
GTTGTCTCTCATGTAGCTGCACCTAATTCATCATCTTTGGCCAACATGAT
TCGGGAACAAGTTGAGGCAGCTGTGGCCAACCTCTTTACTTCTGGCGGAA
TTTCGCCAAGTTTGACGTCCTCCAGTCTCATTCAAAATCCTGTTTTACCA
GTGCAACCACAACCACCTACCCCTCCTTCCTCAGACAATTTGCCAGCAAT
ACCTTCGGCTGTTCTGGAAAGGATCAGGAAGGacCACATCTTGTGAGCCA
GTTggcaaaatatcaaatttatattgCTCAATTTGCATCTAATTATAATT
TTAAGGCTTGGTACAGTTATGACAAAGCCTTTAAGATGTTTTTAGCTAAT
AATCCTTTGGCTAGGTGGGATGTTTGCAATGAGGATATTTACAATGTTCA
TCTTCGGGGGGCTTCAGGGAGGGCCCAGTGTTTTTCATGTGGTGCCAGGg
atcatttttcttcttcttgccCGTCCAAACGCCCCAGTCCCAGCGCGTCA
AACCTCGCAACAACCTTTTGCATCTGCTCGCACTAGATTTCCATTTGCGC
GCAGCCAGTCGGGGAATGGGGGGAATGGGAATGCGCCCTTTCTCGACCCC
CAGCTTGCAGCGTCTTCAGCCCAATCTGCAGAGTTTTGTAGACAGTACAA
CTTTCGCCAGTNCCGGGAACAAGTTGAGGCAGCTGTGGCCAACCTCTTTA
CTTCTGGCGGCATTTCGCCAAGTTTGACGTCCTCCAGTCTCATTCAAAAT
CCTGTTTTACCAGCGCAACCACAACCACCTACCCCTCCTTCCTCAGACAA
TTTGCCAGCAATACCTTCGGCTGTTCTGGAAAGGATCAGGAAGGGTGAGT
TTATT
Run BLAST on NCBI

protein sequence of TCONS_00037922-protein

>TCONS_00037922-protein ID=TCONS_00037922-protein|Name=TCONS_00037922-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MINFTIKWLLLSTVWLSFDFISCVKRKATDPVDRQRNNSPVVTDDPAIII
AIDPQQRSLEQWKTFTREALVLYANANNIQATGTHEQLASALFEHFQSSL
SSTASSAPTTSGSSSSTTATTASSTSQTTSVTQMTAPVVSHVAAPNSSSL
ANMIREQVEAAVANLFTSGGISPSLTSSSLIQNPVLPVQPQPPTPPSSDN
LPAIPSAVLERIRKDHIL
Run BLAST on NCBI

transcript from alignment at sc0001736:42377..44095+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037922 ID=TCONS_00037922|Name=TCONS_00037922|organism=Clytia hemisphaerica|type=transcript|length=1719bp|location=Sequence derived from alignment at sc0001736:42377..44095+ (Clytia hemisphaerica)
aattggaGTTATTCATAACTCAGGTTAATTGAGATAGCGGTGTTATTGTC
TTCGGTCCCGTAACCTTTATGCAGCGCCAGTTCTATCTATATTACTTTTC
GTGTGAAATAGCGCCCCATTGGTACATTTCTACTTTGCGGTTTTGTGAAC
TTCCTCTTTCACTGTCTGTTATCTGAGCTGTTCAGACATAATTTCCAGAT
TGTTATCATTTTATATCTTGGAATATTTTTCTTTTCATTATGATAAACTT
CACAATCAAATGGCTTTTACTTTCAACTGTTTGGTTATCATTTGATTTCA
TCTCTTGTGTCAAGAGAAAAGCCACCGATCCAGTTGATCGACAAAGAAAC
AACAGTCCTGTCGTAACTGATGATCCTGCCATTATCATTGCAATTGACCC
ACAACAACGTTCCCTTGAACAGTGGAAAACATTTACCAGGGAGGCTTTGG
TTTTGTACGCCAATGCTAATAATATCCAGGCCACTGGAACTCATGAGCAG
CTTGCTTCTGCCCTTTTCGAACATTTTCAGTCGTCGCTTTCGAGCACGGC
TTCAAGTGCACCCACCACCAGCGGATCAAGTTCATCTACAACAGCCACAA
CTGCTTCATCAACATCTCAAACTACTTCTGTTACTCAGATGACTGCACCA
GTTGTCTCTCATGTAGCTGCACCTAATTCATCATCTTTGGCCAACATGAT
TCGGGAACAAGTTGAGGCAGCTGTGGCCAACCTCTTTACTTCTGGCGGAA
TTTCGCCAAGTTTGACGTCCTCCAGTCTCATTCAAAATCCTGTTTTACCA
GTGCAACCACAACCACCTACCCCTCCTTCCTCAGACAATTTGCCAGCAAT
ACCTTCGGCTGTTCTGGAAAGGATCAGGAAGGGTGAGTTTATTAATTTTG
ATCTTTTACTTCCCAATAATGTACCTTCAGAAACAATGGATTCCTATGCT
ATTTCGCTGGACGACTCCGATCCTTCTGCAACTTCCCCAAGAATCCTAAT
CCAAAATGGCAAGcgttcaaataaaaacaaagtcaCAGATTTTCATTCCT
GGTTTCTTGCTTGGTCACTATTTTTTCAggcttttattatttttagacCA
CATCTTGTGAGCCAGTTggcaaaatatcaaatttatattgCTCAATTTGC
ATCTAATTATAATTTTAAGGCTTGGTACAGTTATGACAAAGCCTTTAAGA
TGTTTTTAGCTAATAATCCTTTGGCTAGGTGGGATGTTTGCAATGAGGAT
ATTTACAATGTTCATCTTCGGGGGGCTTCAGGGAGGGCCCAGTGTTTTTC
ATGTGGTGCCAGGgatcatttttcttcttcttgccCGTCCAAACGCCCCA
GTCCCAGCGCGTCAAACCTCGCAACAACCTTTTGCATCTGCTCGCACTAG
ATTTCCATTTGCGCGCAGCCAGTCGGGGAATGGGGGGAATGGGAATGCGC
CCTTTCTCGACCCCCAGCTTGCAGCGTCTTCAGCCCAATCTGCAGAGTTT
TGTAGACAGTACAACTTTCGCCAGTNCCGGGAACAAGTTGAGGCAGCTGT
GGCCAACCTCTTTACTTCTGGCGGCATTTCGCCAAGTTTGACGTCCTCCA
GTCTCATTCAAAATCCTGTTTTACCAGCGCAACCACAACCACCTACCCCT
CCTTCCTCAGACAATTTGCCAGCAATACCTTCGGCTGTTCTGGAAAGGAT
CAGGAAGGGTGAGTTTATT

Coding sequence (CDS) from alignment at sc0001736:42377..44095+

>TCONS_00037922 ID=TCONS_00037922|Name=TCONS_00037922|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at sc0001736:42377..44095+ (Clytia hemisphaerica)
ATGATAAACTTCACAATCAAATGGCTTTTACTTTCAACTGTTTGGTTATC
ATTTGATTTCATCTCTTGTGTCAAGAGAAAAGCCACCGATCCAGTTGATC
GACAAAGAAACAACAGTCCTGTCGTAACTGATGATCCTGCCATTATCATT
GCAATTGACCCACAACAACGTTCCCTTGAACAGTGGAAAACATTTACCAG
GGAGGCTTTGGTTTTGTACGCCAATGCTAATAATATCCAGGCCACTGGAA
CTCATGAGCAGCTTGCTTCTGCCCTTTTCGAACATTTTCAGTCGTCGCTT
TCGAGCACGGCTTCAAGTGCACCCACCACCAGCGGATCAAGTTCATCTAC
AACAGCCACAACTGCTTCATCAACATCTCAAACTACTTCTGTTACTCAGA
TGACTGCACCAGTTGTCTCTCATGTAGCTGCACCTAATTCATCATCTTTG
GCCAACATGATTCGGGAACAAGTTGAGGCAGCTGTGGCCAACCTCTTTAC
TTCTGGCGGAATTTCGCCAAGTTTGACGTCCTCCAGTCTCATTCAAAATC
CTGTTTTACCAGTGCAACCACAACCACCTACCCCTCCTTCCTCAGACAAT
TTGCCAGCAATACCTTCGGCTGTTCTGGAAAGGATCAGGAAGGacCACAT
CTTGTGAATGATAAACTTCACAATCAAATGGCTTTTACTTTCAACTGTTT
GGTTATCATTTGATTTCATCTCTTGTGTCAAGAGAAAAGCCACCGATCCA
GTTGATCGACAAAGAAACAACAGTCCTGTCGTAACTGATGATCCTGCCAT
TATCATTGCAATTGACCCACAACAACGTTCCCTTGAACAGTGGAAAACAT
TTACCAGGGAGGCTTTGGTTTTGTACGCCAATGCTAATAATATCCAGGCC
ACTGGAACTCATGAGCAGCTTGCTTCTGCCCTTTTCGAACATTTTCAGTC
GTCGCTTTCGAGCACGGCTTCAAGTGCACCCACCACCAGCGGATCAAGTT
CATCTACAACAGCCACAACTGCTTCATCAACATCTCAAACTACTTCTGTT
ACTCAGATGACTGCACCAGTTGTCTCTCATGTAGCTGCACCTAATTCATC
ATCTTTGGCCAACATGATTCGGGAACAAGTTGAGGCAGCTGTGGCCAACC
TCTTTACTTCTGGCGGAATTTCGCCAAGTTTGACGTCCTCCAGTCTCATT
CAAAATCCTGTTTTACCAGTGCAACCACAACCACCTACCCCTCCTTCCTC
AGACAATTTGCCAGCAATACCTTCGGCTGTTCTGGAAAGGATCAGGAAGG
acCACATCTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022613XLOC_022613Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037922-proteinTCONS_00037922-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037922-exon-sc0001736-1491911889:42377..43258TCONS_00037922-exon-sc0001736-1491911889:42377..43258Clytia hemisphaericaexon
TCONS_00037922-exon-sc0001736-1510915933:42377..43258TCONS_00037922-exon-sc0001736-1510915933:42377..43258Clytia hemisphaericaexon
TCONS_00037922-exon-sc0001736-1575043694:42377..43258TCONS_00037922-exon-sc0001736-1575043694:42377..43258Clytia hemisphaericaexon
TCONS_00037922-exon-sc0001736-1491911889:43473..44095TCONS_00037922-exon-sc0001736-1491911889:43473..44095Clytia hemisphaericaexon
TCONS_00037922-exon-sc0001736-1510915933:43473..44095TCONS_00037922-exon-sc0001736-1510915933:43473..44095Clytia hemisphaericaexon
TCONS_00037922-exon-sc0001736-1575043694:43473..44095TCONS_00037922-exon-sc0001736-1575043694:43473..44095Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001736supercontigsc0001736:42377..44095 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0722885	0	0	0.229301	0	0	0	0	0	1.48437e-06	0.27961	0.56458	0.0127092	0	1.23985	0.230109	0	0	0	0	0	0	0.0107613	0	0	0	0	0.751476	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037922 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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