TCONS_00037920 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037920
Unique NameTCONS_00037920
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1724

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037920 ID=TCONS_00037920|Name=TCONS_00037920|organism=Clytia hemisphaerica|type=transcript|length=1724bp
attaaaattggaGTTATTCATAACTCAGGTTAATTGAGATAGCGGTGTTA
TTGTCTTCGGTCCCGTAACCTTTATGCAGCGCCAGTTCTATCTATATTAC
TTTTCGTGTGAAATAGCGCCCCATTGGTACATTTCTACTTTGCGGTTTTG
TGAACTTCCTCTTTCACTGTCTGTTATCTGAGCTGTTCAGACATAATTTC
CAGATTGTTATCATTTTATATCTTGGAATATTTTTCTTTTCATTATGATA
AACTTCACAATCAAATGGCTTTTACTTTCAACTGTTTGGTTATCATTTGA
TTTCATCTCTTGTGTCAAGAGAAAAGCCACCGATCCAGTTGATCGACAAA
GAAACAACAGTCCTGTCGTAACTGATGATCCTGCCATTATCATTGCAATT
GACCCACAACAACGTTCCCTTGAACAGTGGAAAACATTTACCAGGGAGGC
TTTGGTTTTGTACGCCAATGCTAATAATATCCAGGCCACTGGAACTCATG
AGCAGCTTGCTTCTGCCCTTTTCGAACATTTTCAGTCGTCGCTTTCGAGC
ACGGCTTCAAGTGCACCCACCACCAGCGGATCAAGTTCATCTACAACAGC
CACAACTGCTTCATCAACATCTCAAACTACTTCTGTTACTCAGATGACTG
CACCAGTTGTCTCTCATGTAGCTGCACCTAATTCATCATCTTTGGCCAAC
ATGATTCGGGAACAAGTTGAGGCAGCTGTGGCCAACCTCTTTACTTCTGG
CGGAATTTCGCCAAGTTTGACGTCCTCCAGTCTCATTCAAAATCCTGTTT
TACCAGTGCAACCACAACCACCTACCCCTCCTTCCTCAGACAATTTGCCA
GCAATACCTTCGGCTGTTCTGGAAAGGATCAGGAAGGGTGAGTTTATTAA
TTTTGATCTTTTACTTCCCAATAATGTACCTTCAGAAACAATGGATTCCT
ATGCTATTTCGCTGGACGACTCCGATCCTTCTGCAACTTCCCCAAGAATC
CTAATCCAAAATGGCAAGcgttcaaataaaaacaaagtcaCAGATTTTCA
TTCCTGGTTTCTTGCTTGGTCACTATTTTTTCAggcttttattattttta
gacCACATCTTGTGAGCCAGTTggcaaaatatcaaatttatattgCTCAA
TTTGCATCTAATTATAATTTTAAGGCTTGGTACAGTTATGACAAAGCCTT
TAAGATGTTTTTAGCTAATAATCCTTTGGCTAGGTGGGATGTTTGCAATG
AGGATATTTACAATGTTCATCTTCGGGGGGCTTCAGGGAGGGCCCAGTGT
TTTTCATGTGGTGCCAGGgatcatttttcttcttcttgccCGTCCAAACG
CCCCAGTCCCAGCGCGTCAAACCTCGCAACAACCTTTTGCATCTGCTCGC
ACTAGATTTCCATTTGCGCGCAGCCAGTCGGGGAATGGGGGGAATGGGAA
TGCGCCCTTTCTCGACCCCCAGCTTGCAGCGTCTTCAGCCCAATCTGCAG
AGTTTTGTAGACAGTACAACTTTCGCCAGTNCCGGGAACAAGTTGAGGCA
GCTGTGGCCAACCTCTTTACTTCTGGCGGCATTTCGCCAAGTTTGACGTC
CTCCAGTCTCATTCAAAATCCTGTTTTACCAGCGCAACCACAACCACCTA
CCCCTCCTTCCTCAGACAATTTGCCAGCAATACCTTCGGCTGTTCTGGAA
AGGATCAGGAAGGGTGAGTTTATT
Run BLAST on NCBI

transcript from alignment at sc0001736:42372..44095+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037920 ID=TCONS_00037920|Name=TCONS_00037920|organism=Clytia hemisphaerica|type=transcript|length=1724bp|location=Sequence derived from alignment at sc0001736:42372..44095+ (Clytia hemisphaerica)
attaaaattggaGTTATTCATAACTCAGGTTAATTGAGATAGCGGTGTTA
TTGTCTTCGGTCCCGTAACCTTTATGCAGCGCCAGTTCTATCTATATTAC
TTTTCGTGTGAAATAGCGCCCCATTGGTACATTTCTACTTTGCGGTTTTG
TGAACTTCCTCTTTCACTGTCTGTTATCTGAGCTGTTCAGACATAATTTC
CAGATTGTTATCATTTTATATCTTGGAATATTTTTCTTTTCATTATGATA
AACTTCACAATCAAATGGCTTTTACTTTCAACTGTTTGGTTATCATTTGA
TTTCATCTCTTGTGTCAAGAGAAAAGCCACCGATCCAGTTGATCGACAAA
GAAACAACAGTCCTGTCGTAACTGATGATCCTGCCATTATCATTGCAATT
GACCCACAACAACGTTCCCTTGAACAGTGGAAAACATTTACCAGGGAGGC
TTTGGTTTTGTACGCCAATGCTAATAATATCCAGGCCACTGGAACTCATG
AGCAGCTTGCTTCTGCCCTTTTCGAACATTTTCAGTCGTCGCTTTCGAGC
ACGGCTTCAAGTGCACCCACCACCAGCGGATCAAGTTCATCTACAACAGC
CACAACTGCTTCATCAACATCTCAAACTACTTCTGTTACTCAGATGACTG
CACCAGTTGTCTCTCATGTAGCTGCACCTAATTCATCATCTTTGGCCAAC
ATGATTCGGGAACAAGTTGAGGCAGCTGTGGCCAACCTCTTTACTTCTGG
CGGAATTTCGCCAAGTTTGACGTCCTCCAGTCTCATTCAAAATCCTGTTT
TACCAGTGCAACCACAACCACCTACCCCTCCTTCCTCAGACAATTTGCCA
GCAATACCTTCGGCTGTTCTGGAAAGGATCAGGAAGGGTGAGTTTATTAA
TTTTGATCTTTTACTTCCCAATAATGTACCTTCAGAAACAATGGATTCCT
ATGCTATTTCGCTGGACGACTCCGATCCTTCTGCAACTTCCCCAAGAATC
CTAATCCAAAATGGCAAGcgttcaaataaaaacaaagtcaCAGATTTTCA
TTCCTGGTTTCTTGCTTGGTCACTATTTTTTCAggcttttattattttta
gacCACATCTTGTGAGCCAGTTggcaaaatatcaaatttatattgCTCAA
TTTGCATCTAATTATAATTTTAAGGCTTGGTACAGTTATGACAAAGCCTT
TAAGATGTTTTTAGCTAATAATCCTTTGGCTAGGTGGGATGTTTGCAATG
AGGATATTTACAATGTTCATCTTCGGGGGGCTTCAGGGAGGGCCCAGTGT
TTTTCATGTGGTGCCAGGgatcatttttcttcttcttgccCGTCCAAACG
CCCCAGTCCCAGCGCGTCAAACCTCGCAACAACCTTTTGCATCTGCTCGC
ACTAGATTTCCATTTGCGCGCAGCCAGTCGGGGAATGGGGGGAATGGGAA
TGCGCCCTTTCTCGACCCCCAGCTTGCAGCGTCTTCAGCCCAATCTGCAG
AGTTTTGTAGACAGTACAACTTTCGCCAGTNCCGGGAACAAGTTGAGGCA
GCTGTGGCCAACCTCTTTACTTCTGGCGGCATTTCGCCAAGTTTGACGTC
CTCCAGTCTCATTCAAAATCCTGTTTTACCAGCGCAACCACAACCACCTA
CCCCTCCTTCCTCAGACAATTTGCCAGCAATACCTTCGGCTGTTCTGGAA
AGGATCAGGAAGGGTGAGTTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022613XLOC_022613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037920-exon-sc0001736-1491911889:42372..44095TCONS_00037920-exon-sc0001736-1491911889:42372..44095Clytia hemisphaericaexon
TCONS_00037920-exon-sc0001736-1510915933:42372..44095TCONS_00037920-exon-sc0001736-1510915933:42372..44095Clytia hemisphaericaexon
TCONS_00037920-exon-sc0001736-1575043694:42372..44095TCONS_00037920-exon-sc0001736-1575043694:42372..44095Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001736supercontigsc0001736:42372..44095 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.853857	0.446349	0.625421	0.66209	23.4939	17.2883	11.6363	15.0047	4.31717	10.0712	4.49837	4.82675	0.861923	1.2291	1.18788	1.1922	1.94579	1.67533	1.86072	1.85213	1.21842	1.4497	0.774622	1.68321	1.65015	2.82271	2.45869	1.84411	0.359612	1.18875
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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