TCONS_00037919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037919
Unique NameTCONS_00037919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037919 ID=TCONS_00037919|Name=TCONS_00037919|organism=Clytia hemisphaerica|type=transcript|length=368bp
CCGACTTTAAATTTGATTTAAAAATTATGGATGCTAACAACGAAGCGAAT
GAGGTTCAGCTTGCTAATGTTGGCGATCGATTGAAATTTGTGTTAAACCT
TGAGAATGCTCCGAATCAAGTCAAAGCTTCACCGCAGAACTGTTATGCTA
CAAAACCGGACGGAAGTGGCAGATACAACCTTATTTCAAATAGATGTGTT
GATACAAACGAAGAAACAACCTTCATCACATCCCCAAGTAACGAGCTTCA
CTATTTCTCATGGGAGCTGTTAGCTTTCCGATATTTCGGAGAATCAAATT
CTGTGGTCATCGTGTGTGAGGTTTTGATCTGCAAAAACGAACCATTTTGG
AATTTGTCTGAAGAATGC
Run BLAST on NCBI

protein sequence of TCONS_00037919-protein

>TCONS_00037919-protein ID=TCONS_00037919-protein|Name=TCONS_00037919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
DFKFDLKIMDANNEANEVQLANVGDRLKFVLNLENAPNQVKASPQNCYAT
KPDGSGRYNLISNRCVDTNEETTFITSPSNELHYFSWELLAFRYFGESNS
VVIVCEVLICKNEPFWNLSEEC
Run BLAST on NCBI

transcript from alignment at sc0001736:31961..33207+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037919 ID=TCONS_00037919|Name=TCONS_00037919|organism=Clytia hemisphaerica|type=transcript|length=1247bp|location=Sequence derived from alignment at sc0001736:31961..33207+ (Clytia hemisphaerica)
CCGACTTTAAATTTGATTTAAAAATTATGGATGCTAACAACGAAGCGAAT
GAGGTTCAGCTTGCTAATGTTGGCGATCGATTGAAATTTGTGTTAAACCT
TGAGAATGCTCCGAATCAAGTCAAAGCTTCACCGCAGAACTGTTATGCTA
CAAAACCGGACGGAAGTGGCAGATACAACCTTATTTCAAATAGGTATAAT
TTTATGTTATTTTGGAAATGCGTCTTCAGAGAATAAGTTACTGACCGTAA
GGACGGATAGGTAGATGTTTCACTCTTAGTCAAAGAGTCAACCTATAAGA
AACTCGAAACTTATTTTAACAAAGCTTGTTGAAAAACCGTCAaaaaggga
gccttcgggtcatCCTTCATTACGGTcgtaaaaataaaaccacaaAAGTA
TGTAAGAAAAGTAATTATAAATGGGACTTGGGACTTGGAtaccaaagttt
ttcaaaaaaggcaaacCAAGGGCGTTTAGAATGCCATGACGTGGaacaaa
tcattctttttatcgAGACTTCTCAACCAACTGGCCACCCACAAAGGCAA
TAAATAAGTGGTAACCTTACTGTATACCAGTTCACGCCCTAGACAAGAGT
ATACTTCTGGCTCGTACCCCTTCTAGCTGAACTTAGCTTactaataattt
ttgatgactctGAGTTCAGTGGAATAGACTAAGAGCTAATGGCAAGATCG
CCATTTTCACCAAAacttccaaataacaaaaaggaCAAAAAGCTGCTTGG
ACTTGAACATTAGTTTTAGATAGAAAAACCAGCATAAACTAAAGAGATCT
ACAATATTctattatgaaaataaaacattacACAATTGTTTACATTCCAA
AATCAACTGAATTCTACCAGACTGCTTTACAGTCCGACTGGCCagagtaa
aaaaaataaatgccGCGAATACTTCAAGGCAACTTATCAGCGTTGTCCAG
TCTATCAAAGCTCGAAATGACATCCAGGCGACTTATCCCTCTGTACCCTT
CTAACTATCTTTCTGTTAGCAAGCACGACTTAAATTAGATTAGCCTTACT
ATATTTTCATTATCAACTGTAGATGTGTTGATACAAACGAAGAAACAACC
TTCATCACATCCCCAAGTAACGAGCTTCACTATTTCTCATGGGAGCTGTT
AGCTTTCCGATATTTCGGAGAATCAAATTCTGTGGTCATCGTGTGTGAGG
TTTTGATCTGCAAAAACGAACCATTTTGGAATTTGTCTGAAGAATGC

Coding sequence (CDS) from alignment at sc0001736:31961..33207+

>TCONS_00037919 ID=TCONS_00037919|Name=TCONS_00037919|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at sc0001736:31961..33207+ (Clytia hemisphaerica)
GACTTTAAATTTGATTTAAAAATTATGGATGCTAACAACGAAGCGAATGA
GGTTCAGCTTGCTAATGTTGGCGATCGATTGAAATTTGTGTTAAACCTTG
AGAATGCTCCGAATCAAGTCAAAGCTTCACCGCAGAACTGTTATGCTACA
AAACCGGACGGAAGTGGCAGATACAACCTTATTTCAAATAGATGTGTTGA
TACAAACGAAGAAACAACCTTCATCACATCCCCAAGTAACGAGCTTCACT
ATTTCTCATGGGAGCTGTTAGCTTTCCGATATTTCGGAGAATCAAATTCT
GTGGTCATCGTGTGTGAGGTTTTGATCTGCAAAAACGAACCATTTTGGAA
TTTGTCTGAAGAATGCGACTTTAAATTTGATTTAAAAATTATGGATGCTA
ACAACGAAGCGAATGAGGTTCAGCTTGCTAATGTTGGCGATCGATTGAAA
TTTGTGTTAAACCTTGAGAATGCTCCGAATCAAGTCAAAGCTTCACCGCA
GAACTGTTATGCTACAAAACCGGACGGAAGTGGCAGATACAACCTTATTT
CAAATAGATGTGTTGATACAAACGAAGAAACAACCTTCATCACATCCCCA
AGTAACGAGCTTCACTATTTCTCATGGGAGCTGTTAGCTTTCCGATATTT
CGGAGAATCAAATTCTGTGGTCATCGTGTGTGAGGTTTTGATCTGCAAAA
ACGAACCATTTTGGAATTTGTCTGAAGAATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022612XLOC_022612Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037919-proteinTCONS_00037919-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037919-exon-sc0001736-1491911889:31961..32153TCONS_00037919-exon-sc0001736-1491911889:31961..32153Clytia hemisphaericaexon
TCONS_00037919-exon-sc0001736-1510915933:31961..32153TCONS_00037919-exon-sc0001736-1510915933:31961..32153Clytia hemisphaericaexon
TCONS_00037919-exon-sc0001736-1575043694:31961..32153TCONS_00037919-exon-sc0001736-1575043694:31961..32153Clytia hemisphaericaexon
TCONS_00037919-exon-sc0001736-1491911889:33033..33207TCONS_00037919-exon-sc0001736-1491911889:33033..33207Clytia hemisphaericaexon
TCONS_00037919-exon-sc0001736-1510915933:33033..33207TCONS_00037919-exon-sc0001736-1510915933:33033..33207Clytia hemisphaericaexon
TCONS_00037919-exon-sc0001736-1575043694:33033..33207TCONS_00037919-exon-sc0001736-1575043694:33033..33207Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001736supercontigsc0001736:31961..33207 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.908527	1.35343	0.395925	0	6.2876	7.8596	12.4356	8.18043	8.32194	6.79037	2.24988	5.69241	0.778823	1.91672	0.289477	0.2094	1.17248	0.754006	0	0.65181	9.30016	7.95352	36.9892	32.9235	39.7922	44.5321	27.7674	36.8229	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001507ZP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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