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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037916 ID=TCONS_00037916|Name=TCONS_00037916|organism=Clytia hemisphaerica|type=transcript|length=623bp
attttttcataagaacagatcatatttttccagctggtcccaatcttcag
taaaacagatcatatttttcatattttaccCCCCCCCNTGACGGAAATAG
TAATTTCAACGAATCAGTTGATTTTATCAAGACGGTAATAGACAACTTCG
TCATTGGCCCCAATCGTACTCGAGTGTCCCTTATCACCACGTGTTATTCT
TCAAGGCGACTGGATTTTGGTTTCAATGAAAGTCTCAGTTACTACCTCTA
CGACCTCAACTGGTATCTTAATAACATGAAGAAGCCCAAGGGAAGTTATG
TTCAGGCTACATATCTTGATTACGTGTTAAACGTTGCAAGAGAGGTCTTC
ACTCCTGGCTACGGGGAGAGAACCAACAAATCTAATGTGCTGGTTGTACT
TCTTGATAGAGGGCATAATGGTTTCAGTTATTTcataaattcaacaaaat
cactTCATAATAATGTGACAGACTTAAAAGTCTTTGCGGTTGGAATCGGA
AATGATACGGCTATCGACAACTTAAACATCATTGCTAATAACAAATCATC
AAACGTCTTCCATGAAGTGGATTTAAGTCTCAATTCCACAGCAAAATATG
TTAGCTTTATGGCCTGCAGTGGT Run BLAST on NCBI protein sequence of TCONS_00037916-protein >TCONS_00037916-protein ID=TCONS_00037916-protein|Name=TCONS_00037916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MKKPKGSYVQATYLDYVLNVAREVFTPGYGERTNKSNVLVVLLDRGHNGF
SYFINSTKSLHNNVTDLKVFAVGIGNDTAIDNLNIIANNKSSNVFHEVDL
SLNSTAKYVSFMACSG Run BLAST on NCBI transcript from alignment at sc0001736:10755..14403+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037916 ID=TCONS_00037916|Name=TCONS_00037916|organism=Clytia hemisphaerica|type=transcript|length=3649bp|location=Sequence derived from alignment at sc0001736:10755..14403+ (Clytia hemisphaerica)
attttttcataagaacagatcatatttttccagctggtcccaatcttcag
taaaacagatcatatttttcatattttaccCCCCCCCNTGACGGAAATAG
TAATTTCAACGAATCAGTTGATTTTATCAAGACGGTAATAGACAACTTCG
TCATTGGCCCCAATCGTACTCGAGTGTCCCTTATCACCACGTGTTATTCT
TCAAGGCGACTGGATTTTGGTTTCAATGAAAGTCTCAGTTACTACCTCTA
CGACCTCAACTGGTATCTTAATAACATGAAGAAGCCCAAGGGAAGTAAGT
AACCCTGACTTTAAAGTAAGTAGAAAGAGTGTCAATTAACAGGAGATCGA
AGGGCTCCTCTTTTGATAGTTATCTACCAGAACCAGGCCCGGTGGAAGGA
GATTTGGGAGGCTGAAACCCCCTCTCCCACTTTTGAGCAGATGAGattct
ttttctcaaattcctagcgacttttatctcattttgaacCTTCAGCCCCT
caacttttacggttgttccgctgGGCTTGAGAACGTAGGGAAGAGTGCTA
CGAACTCACTTCCCGATCCATATACCCTTGCCCATTCTCTTAATTTTGTA
GTTTGAtgttcacaggaaaaaattttcgatttccaaggttggaaatttca
agttttcttagttggaaaaaagataaaatccaatggaaaatccaacctga
aaatgtgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNattttgcattttccatggcttggaattttcgtaa
atccaggttgaaaaaagccaaaatccaaatttaacaaggttggaattttt
ttaaattcagttggaaaaaaagccaaaatccaagcttgaaacaaggttgg
aattttcgaaaatcggggttgaaaaagccaaaatccaaatttaacaaggt
tggattttttttaaattcaggttgaaaaaagccaaaatcNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNcaaaaagccaaaatccaagcttaaa
caaggttggaattttcgaaaatcgaggttgaaaaagccaaaatccaaatt
taacaaggttggaattttttaaaattcacgttgaaaaaagccaaaatcca
aaaagtgatggcagagatgtggaaaaaagATCTTAagcaaggtttttgtt
tttgtgaatagtcactcgctagcctaggctcgatggctcccggtcaatct
ctcgttattgttcgcacggatacgtggttgatcttagatcactcacacag
ctcagcagggcgctatttgaaactatgacacaagtaccctatgtgcttca
ctgtgcgaactcactgcgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCAtgggtttttttcacttgatttttcaagggcattggttt
attctacaaaacctatgggtaatttacgttttccaaatcagcttaaggta
atcgctcaaatttccaagcttcaattataaaaccaaaatttccaacccaa
aaatattgaatttccaaccttggaaatcgaaatttttttcctgtggtTAC
AGTAGGCTACGACTTAaaaccacagatctgtaaagcccgaagggctagat
aagcgacttttatcgaaaagtgaagccaaggtttggaaggatttcctacc
aaagtcacgtgactaaaatatgcaatttcacctgtttgagagatgtgaac
tAGCGTTTGCCACCTACTTTTTTGATAACGcgctccaaaaacaattaaaa
tgctagatgcTATCCGctggcacgaaatttaaaaagtcaattttttgctt
cacttttttttactgGAGAAAGCTTACAGTtgcatatctagcccttcggg
ctttacagatctgtgcttaaaacaacgttttgtgtCTAAAAGTGAAAGTG
GTTCTGAGCTATTACCTTTTGACAGGGGTTGGTAAACACACCTGAACACA
AATATACGGCATCCATCGTTAAAGATTAATCTCATCTTCCGTTTTAATAT
TGAAGGTTATGTTCAGGCTACATATCTTGATTACGTGTTAAACGTTGCAA
GAGAGGTCTTCACTCCTGGCTACGGGGAGAGAACCAACAAATCTAATGTA
AGTGCATCCGAATCGTGTTTCCCGGGGACAGAGAAGGCTATAGAGTTACA
GAAAAACAAGGGTTACATTTCATTCATTTTCGACCGAGCTGTCAGTAATT
TCAATTAtgtttataacttttgatcgaTTTCAATTAGATTACAAAAATAT
TCCTCagtacactcttctcgagatgcatttTGCAGGCTTCGTTTTCAAAT
ATCGTTGCTAGGGTAACTCGACATCATTTGATACGTAATTATATCGTTTG
TGATCGTTTGTGCTTCTGTTTTAAGATTGATAAACTGCCTCTTGAGAATA
CATTAACGTCAATGTAGATTTAATGCCAATAACTATTccgtttgaaaacg
aggcctgcAATGCTTTTTATACATCTCGAGAAAAGTGTATTAGATAGAAC
TAGAACAATATAGTTTCAgtatgttgaaaaatattcattagTGACGCAAT
TCTTCATTTTAGGTGCTGGTTGTACTTCTTGATAGAGGGCATAATGGTTT
CAGTTATTTcataaattcaacaaaatcactTCATAATAATGTGACAGACT
TAAAAGTCTTTGCGGTTGGAATCGGAAATGATACGGCTATCGACAACTTA
AACATCATTGCTAATAACAAATCATCAAACGTCTTCCATGAAGTGGATTT
AAGTCTCAATTCCACAGCAAAATATGTTAGCTTTATGGCCTGCAGTGGT Coding sequence (CDS) from alignment at sc0001736:10755..14403+ >TCONS_00037916 ID=TCONS_00037916|Name=TCONS_00037916|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0001736:10755..14403+ (Clytia hemisphaerica)
ATGAAGAAGCCCAAGGGAAGTTATGTTCAGGCTACATATCTTGATTACGT
GTTAAACGTTGCAAGAGAGGTCTTCACTCCTGGCTACGGGGAGAGAACCA
ACAAATCTAATGTGCTGGTTGTACTTCTTGATAGAGGGCATAATGGTTTC
AGTTATTTcataaattcaacaaaatcactTCATAATAATGTGACAGACTT
AAAAGTCTTTGCGGTTGGAATCGGAAATGATACGGCTATCGACAACTTAA
ACATCATTGCTAATAACAAATCATCAAACGTCTTCCATGAAGTGGATTTA
AGTCTCAATTCCACAGCAAAATATGTTAGCTTTATGGCCTGCAGTGGTAT
GAAGAAGCCCAAGGGAAGTTATGTTCAGGCTACATATCTTGATTACGTGT
TAAACGTTGCAAGAGAGGTCTTCACTCCTGGCTACGGGGAGAGAACCAAC
AAATCTAATGTGCTGGTTGTACTTCTTGATAGAGGGCATAATGGTTTCAG
TTATTTcataaattcaacaaaatcactTCATAATAATGTGACAGACTTAA
AAGTCTTTGCGGTTGGAATCGGAAATGATACGGCTATCGACAACTTAAAC
ATCATTGCTAATAACAAATCATCAAACGTCTTCCATGAAGTGGATTTAAG
TCTCAATTCCACAGCAAAATATGTTAGCTTTATGGCCTGCAGTGGTATGA
AGAAGCCCAAGGGAAGTTATGTTCAGGCTACATATCTTGATTACGTGTTA
AACGTTGCAAGAGAGGTCTTCACTCCTGGCTACGGGGAGAGAACCAACAA
ATCTAATGTGCTGGTTGTACTTCTTGATAGAGGGCATAATGGTTTCAGTT
ATTTcataaattcaacaaaatcactTCATAATAATGTGACAGACTTAAAA
GTCTTTGCGGTTGGAATCGGAAATGATACGGCTATCGACAACTTAAACAT
CATTGCTAATAACAAATCATCAAACGTCTTCCATGAAGTGGATTTAAGTC
TCAATTCCACAGCAAAATATGTTAGCTTTATGGCCTGCAGTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037916-exon-sc0001736-1491911889:10755..11048 | TCONS_00037916-exon-sc0001736-1491911889:10755..11048 | Clytia hemisphaerica | exon |
| TCONS_00037916-exon-sc0001736-1510915933:10755..11048 | TCONS_00037916-exon-sc0001736-1510915933:10755..11048 | Clytia hemisphaerica | exon |
| TCONS_00037916-exon-sc0001736-1575043694:10755..11048 | TCONS_00037916-exon-sc0001736-1575043694:10755..11048 | Clytia hemisphaerica | exon |
| TCONS_00037916-exon-sc0001736-1491911889:13610..13701 | TCONS_00037916-exon-sc0001736-1491911889:13610..13701 | Clytia hemisphaerica | exon |
| TCONS_00037916-exon-sc0001736-1510915933:13610..13701 | TCONS_00037916-exon-sc0001736-1510915933:13610..13701 | Clytia hemisphaerica | exon |
| TCONS_00037916-exon-sc0001736-1575043694:13610..13701 | TCONS_00037916-exon-sc0001736-1575043694:13610..13701 | Clytia hemisphaerica | exon |
| TCONS_00037916-exon-sc0001736-1491911889:14167..14403 | TCONS_00037916-exon-sc0001736-1491911889:14167..14403 | Clytia hemisphaerica | exon |
| TCONS_00037916-exon-sc0001736-1510915933:14167..14403 | TCONS_00037916-exon-sc0001736-1510915933:14167..14403 | Clytia hemisphaerica | exon |
| TCONS_00037916-exon-sc0001736-1575043694:14167..14403 | TCONS_00037916-exon-sc0001736-1575043694:14167..14403 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001736 | supercontig | sc0001736:10755..14403 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002035 | VWF_A |
Blast
The following BLAST results are available for this feature:
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