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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037914 ID=TCONS_00037914|Name=TCONS_00037914|organism=Clytia hemisphaerica|type=transcript|length=377bp
TGGGATTATTAATAATGTTATAAACCCAAACACTGTCATCCATAGCGACC
AGTGGCGAGCTTACAATCGATTGCAACAGTTTGTCCCAAACTGTATACAG
CACGACACTGTCAACCACACCTACCACTTTGTGGATCCTCAAACTGGTGC
ACACACACAACATATCGAATCATATTGGAACAGATTCAAGTTTAAGCTCA
AAGCAATGAAGGGAATCAAGCTCCAATTCCTTACTAGCTACATGGAGGAA
TTTATGTGGAGAGATTGGTATGGATTGGATGCCCCATTTGACAATATAAT
CACTCGCATCAATGTTGATTATCCACAATGATTCTCATTCGTTATTCACC
TGGAATTAATTCACAATTGTATTTTGG Run BLAST on NCBI protein sequence of TCONS_00037914-protein >TCONS_00037914-protein ID=TCONS_00037914-protein|Name=TCONS_00037914-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
GIINNVINPNTVIHSDQWRAYNRLQQFVPNCIQHDTVNHTYHFVDPQTGA
HTQHIESYWNRFKFKLKAMKGIKLQFLTSYMEEFMWRDWYGLDAPFDNII
TRINVDYPQ Run BLAST on NCBI transcript from alignment at sc0001735:15581..16635- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037914 ID=TCONS_00037914|Name=TCONS_00037914|organism=Clytia hemisphaerica|type=transcript|length=1055bp|location=Sequence derived from alignment at sc0001735:15581..16635- (Clytia hemisphaerica)
TGGGATTATTAATAATGTTATAAACCCAAACACTGTCATCCATAGCGACC
AGTGGCGAGCTTACAATCGATTGCAACAGTTTGTCCCAAACTGTATACAG
CACGACACTGTCAACCACACCTACCACTTTGTGGATCCTCAAACTGGTGC
ACACACACAAGTAAGACCATGTACCTAGCCTAAATTTTCAAAACCAAATC
AATAAATTCTTTACATAATAAGGCTTGACTTTTTTAGAAGCTATGGGTAC
CTTATCGGGGAAAACTTCGTCAGGGAAGAGTGACAAAGTTTTAGCCAAGT
GACGAATATTTTTCCCCGACGAAAATTTTCCCGATAAGGTAGTTGTTACT
AGCTATTTTAGGTCATTCCGTACTGTCGCTTTTCTGGAGATCTAAAACTG
AATAAAATTCTAACTCAAATCTTATGAATTCGCTTTCAGCATATCGAATC
ATATTGGAACAGATTCAAGTTTAAGCTCAAAGCAATGAAGGGAATCAAGC
TCCAATTCCTTACTAGCTACATGGAGGAATTTATGTGGAGGTACTTTTTT
TGATTTTTTATGCATTACTTTTTTTTAAACTTAGATTGATTTAACCCAAT
TAGTTCCAAGCTTTTTGGCGGGTACCTGTAATATCCCAAATTTTAAACAA
AGAGATTTTTACTGGTTTTCATGCCATGTTTCACAATAATCAATAAGCCT
AACCTAGACTTGATCTTTAATTCAAAGAATTAGTGCAAGCTCTTTTGATA
AGGTTTATCAAATGTTACAAAGTTTCAAATCATTTCAAAGTTTCAAAAAC
TTTCCCTAATTTATAGGGAAAAGAAATAACCTGGCAAACTCATAACTTTT
TTGTCAAATGGAATTAACGTTTCAGTCGTCTAGAAACTTGAAAGAAATTA
GTCTTATTTTTTGAATTTAATCTTCTTTTTTTTCCCAAGAGATTGGTATG
GATTGGATGCCCCATTTGACAATATAATCACTCGCATCAATGTTGATTAT
CCACAATGATTCTCATTCGTTATTCACCTGGAATTAATTCACAATTGTAT
TTTGG Coding sequence (CDS) from alignment at sc0001735:15581..16635- >TCONS_00037914 ID=TCONS_00037914|Name=TCONS_00037914|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0001735:15581..16635- (Clytia hemisphaerica)
AGATTGGTATGGATTGGATGCCCCATTTGACAATATAATCACTCGCATCA
ATGTTGATTATCCACAATGACATATCGAATCATATTGGAACAGATTCAAG
TTTAAGCTCAAAGCAATGAAGGGAATCAAGCTCCAATTCCTTACTAGCTA
CATGGAGGAATTTATGTGGAGGGGATTATTAATAATGTTATAAACCCAAA
CACTGTCATCCATAGCGACCAGTGGCGAGCTTACAATCGATTGCAACAGT
TTGTCCCAAACTGTATACAGCACGACACTGTCAACCACACCTACCACTTT
GTGGATCCTCAAACTGGTGCACACACACAAAGATTGGTATGGATTGGATG
CCCCATTTGACAATATAATCACTCGCATCAATGTTGATTATCCACAATGA
CATATCGAATCATATTGGAACAGATTCAAGTTTAAGCTCAAAGCAATGAA
GGGAATCAAGCTCCAATTCCTTACTAGCTACATGGAGGAATTTATGTGGA
GGGGATTATTAATAATGTTATAAACCCAAACACTGTCATCCATAGCGACC
AGTGGCGAGCTTACAATCGATTGCAACAGTTTGTCCCAAACTGTATACAG
CACGACACTGTCAACCACACCTACCACTTTGTGGATCCTCAAACTGGTGC
ACACACACAAAGATTGGTATGGATTGGATGCCCCATTTGACAATATAATC
ACTCGCATCAATGTTGATTATCCACAATGACATATCGAATCATATTGGAA
CAGATTCAAGTTTAAGCTCAAAGCAATGAAGGGAATCAAGCTCCAATTCC
TTACTAGCTACATGGAGGAATTTATGTGGAGGGGATTATTAATAATGTTA
TAAACCCAAACACTGTCATCCATAGCGACCAGTGGCGAGCTTACAATCGA
TTGCAACAGTTTGTCCCAAACTGTATACAGCACGACACTGTCAACCACAC
CTACCACTTTGTGGATCCTCAAACTGGTGCACACACACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037914-exon-sc0001735-1575043694:16476..16635 | TCONS_00037914-exon-sc0001735-1575043694:16476..16635 | Clytia hemisphaerica | exon |
| TCONS_00037914-exon-sc0001735-1575043694:16096..16196 | TCONS_00037914-exon-sc0001735-1575043694:16096..16196 | Clytia hemisphaerica | exon |
| TCONS_00037914-exon-sc0001735-1575043694:15581..15696 | TCONS_00037914-exon-sc0001735-1575043694:15581..15696 | Clytia hemisphaerica | exon |
| TCONS_00037914-exon-sc0001735-1510915933:16476..16635 | TCONS_00037914-exon-sc0001735-1510915933:16476..16635 | Clytia hemisphaerica | exon |
| TCONS_00037914-exon-sc0001735-1510915933:16096..16196 | TCONS_00037914-exon-sc0001735-1510915933:16096..16196 | Clytia hemisphaerica | exon |
| TCONS_00037914-exon-sc0001735-1510915933:15581..15696 | TCONS_00037914-exon-sc0001735-1510915933:15581..15696 | Clytia hemisphaerica | exon |
| TCONS_00037914-exon-sc0001735-1491911889:16476..16635 | TCONS_00037914-exon-sc0001735-1491911889:16476..16635 | Clytia hemisphaerica | exon |
| TCONS_00037914-exon-sc0001735-1491911889:16096..16196 | TCONS_00037914-exon-sc0001735-1491911889:16096..16196 | Clytia hemisphaerica | exon |
| TCONS_00037914-exon-sc0001735-1491911889:15581..15696 | TCONS_00037914-exon-sc0001735-1491911889:15581..15696 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001735 | supercontig | sc0001735:15581..16635 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024445 | Tnp_ISXO2-like |
Blast
The following BLAST results are available for this feature:
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