TCONS_00037909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037909
Unique NameTCONS_00037909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037909 ID=TCONS_00037909|Name=TCONS_00037909|organism=Clytia hemisphaerica|type=transcript|length=691bp
TTTCGCTCATTCGTGGATGACATGCCCACCGTCTTTCAATCCAAGACTGG
GACGAGGAGGGATCATTGGAGGCGCACAATGTGAAGGGGAATGGGGCACA
ATTCCTGTTACCGAAGTTGAAGCGGGCGATCGATTGAAAGTGGGATGGGT
TTCGAACAACCATGGTGGTGGTTTTGCACGCATTGCTTTAGTACCTTGGA
ATGAACGAAAAAATGCTCAAAGTTATAAAAACAATGTCATGAAATTCGCA
TGTTATGGACATGATGAGAGACCTGGTAGATATGGATCTGGTGATTGTAA
ACATCCTTGCAATGGAAGACCTGGATGCGAATATCAATCTGACCCATCTG
ATTTTGAGCGTTACGATACAACCATCGGAATTCCAACAAACTTGAAAGAT
GGTTTCTACTCTCTCCAAGCCTCTATGATAGTAGGCAATGGAGGTGTTTA
CAATAGTTGTGCTAAACTAAAGGTCACAGGTGGAAGCCCGTCATTCACGT
GCAGCCCCAGCAAGACACCAGTTTCTTACAGTTGTCGCACTGCACTGAGC
AAAGATATCTCGCCCATAAAATCAGGGACAAAACGCGGTAATTTTTGTTA
TGGTCTTGACGGTAAAGTTGGTACAGTGGATGATTATATGACAGATGTAC
CAATCAACGTTGATTGCGACCCACGTGCTTCTTGCGATCAA
Run BLAST on NCBI

protein sequence of TCONS_00037909-protein

>TCONS_00037909-protein ID=TCONS_00037909-protein|Name=TCONS_00037909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
FAHSWMTCPPSFNPRLGRGGIIGGAQCEGEWGTIPVTEVEAGDRLKVGWV
SNNHGGGFARIALVPWNERKNAQSYKNNVMKFACYGHDERPGRYGSGDCK
HPCNGRPGCEYQSDPSDFERYDTTIGIPTNLKDGFYSLQASMIVGNGGVY
NSCAKLKVTGGSPSFTCSPSKTPVSYSCRTALSKDISPIKSGTKRGNFCY
GLDGKVGTVDDYMTDVPINVDCDPRASCDQ
Run BLAST on NCBI

transcript from alignment at sc0001734:28078..30646-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037909 ID=TCONS_00037909|Name=TCONS_00037909|organism=Clytia hemisphaerica|type=transcript|length=2569bp|location=Sequence derived from alignment at sc0001734:28078..30646- (Clytia hemisphaerica)
TTTCGCTCATTCGTGGATGACATGCCCACCGTAAGTAGATTTGAAATTTG
AACGTTGGAGTAAACAAAATATGAAAAGGCCGTATTCTCAAAAGTGTGCA
TTTCAAGATAACAGTCGTACAGACCCTAAGCCTTTTTGCTGACCCTAAAT
AAGTTATATGATCAAACTCTTTGAAATAATAAACATAGATCGATATTCAA
CGTGAATAGCTCAGTAATCTAGAACAGTTTTATATTGTTTTAACGGGGTC
TACAGCCAGCCGGATCGGCTATCTACGAGCTCGACGAAACTTTGTAGGAA
GCGGGGATTCGAACCCTTGGTTCAGGAGCTGAAAACTTGACCATTTGGCC
ATTAACCCCATATTATGGAATCTCAAGTAACTTTTTCATTTAAATGTGCA
TTCAGGTCTTTCAATCCAAGACTGGGACGAGGAGGGATCATTGGAGGCGC
ACAATGTGAAGGGGAATGGGGCACAAGTAAGTAAAATCTGTTAAACTCCT
GATCTTTTTTTCAATAGCCGAGTAGAAATCGCTGCCATCAAGGCAAAAGG
TCCAATCTCAAAATTAGTGTCTGAGAAAACTGAGAATTTTTCTGTTTGGC
TAACCTTAAATCTTGAGCTTGGCCCATTTTTCATATTGAGGGGGATCCCA
TCTACATGAAAAAGGGTCAATCTCAAAATTTAAAGTTAGCAAAACAGAAG
AAATTCTTAGTTTCCTCAGCCACTAATTTTAAGATTGGTGATAGTAAAAT
ATTCTTTATTTCAGCTGAAAAAAAGCTGATTATAAATTAGTTTTAGACGT
TAGATTACCCTGGCTTACCTGCATATTGATTTTTCGATGTTGGGATCAAA
ACTCAATGAAATGAATTTCTTGATTTCATTCTAGTTCCTGTTACCGAAGT
TGAAGCGGGCGATCGATTGAAAGTGGGATGGGTTTCGAACAACCATGGTG
GTGGTTTTGCACGCATTGCTTTAGTACCTTGGAATGAACGAAAAAATGCT
CAAAGTTATAAAAACAATGTCATGAAATTCGCATGTTATGGACATGATGA
GAGACCTGGTAGATATGGATCTGGTGATTGTAAACATCCTTGCAATGGAA
GACCTGGATGCGAATATCAATCTGGTATGGAACTTAAAACTCTCAAATAT
CTTTGCAACTTTGCAGGTTTACCCTTCGGTCACACTATAGTCCGTATAAA
AACCCTTTGACTGGGAAATCATCATTTTACACCCCGAAATTTGGAAAACA
TGCTTGGGAAATCCCCATTTTACATCCCAAAATTGGGAAAACCCATGCCT
GGGAAATTGTCATTTTACAACCCGAAATTTGGAAAACCCAAGCCAGGGAA
ATAACCACTTTCCAGGCCTGTAGCTGTTTCATTTTTCCAGGGCAAATCCA
ATCCCGAAAATTGTCATTTCCCAGGCCAGGAGATTTAAGATTTTCCTTGA
CTGTTATAACCTTTTGTTCCAGTTTTTGATCAGGTTACAAAATGCTCCCC
TATTCGTCAAACTTGCGGAATTACTTTCATTTTAATGTTCTGCGATTCAG
AAACTTGAACCTCTATGACTCGAAAGAATACTGGTTCCGCACATTTTTGT
TGTCCAAGTCAGGAGACCTGATAGTATTTCAACCCACAGAATCTATCACT
TTCAACCAATAATATTGCTCATGAAATATTATTAACTTTTAGACCCATCT
GATTTTGAGCGTTACGATACAACCATCGGAATTCCAACAAACTTGAAAGA
TGGTTTCTACTCTCTCCAAGCCTCTATGATAGTAGGCAATGGAGGTGTTT
ACAATAGTTGTGCTAAACTAAAGGTCACAGGTGGAAGCCCGTCATTCACG
TGCAGCCCCAGCAAGACACCAGTTTCTTACAGTTGTCGCACTGCACTGAG
CAAAGATATCTCGCCCATAAAATCAGGTAAAGCAACGATTTCAGGTCATG
TTCTCTTTGGCTCTAACGGAGAAGAATTTTTAGGAAACTTCCTTTTATTC
AAACCGCCCCCTTATATTTGGACCGCCCCGTTATTATTCGGACCACCTCT
TTTACTATTCGGGACCTTAGAGTAAGAAACCTCCGCCAGCGCATTACGTG
TTTAAAAAGGTTTAATAAAGAATAAAAACGTGTTATTAATATCAAGACTT
TGAATTGGAAATCACCTTTTCAAAAATTACGTCATGGACAACGCTTACCT
CGTACTTGTTTTCAAAATATTGCTATAGTTTCAGAATCAGGTAGTGGTCG
CACTCAAATAATTCATGAGAAGGTAAAAAATACATTTTTAGTCCTTCAAA
ATTAGGTGAATGAATCACCTCACTTTTTTGCCGAGGAAGGCTATTTTGAA
AATTCTCTTAAAACTTATTTTNAATTATTATTAAACTCTTACGACCAAAA
AGTACTCCTTACTATAAATATTTGGGACAATAAGCTCTTTTCTATTCTTC
CAGGGACAAAACGCGGTAATTTTTGTTATGGTCTTGACGGTAAAGTTGGT
ACAGTGGATGATTATATGACAGATGTACCAATCAACGTTGATTGCGACCC
ACGTGCTTCTTGCGATCAA

Coding sequence (CDS) from alignment at sc0001734:28078..30646-

>TCONS_00037909 ID=TCONS_00037909|Name=TCONS_00037909|organism=Clytia hemisphaerica|type=CDS|length=3450bp|location=Sequence derived from alignment at sc0001734:28078..30646- (Clytia hemisphaerica)
GGACAAAACGCGGTAATTTTTGTTATGGTCTTGACGGTAAAGTTGGTACA
GTGGATGATTATATGACAGATGTACCAATCAACGTTGATTGCGACCCACG
TGCTTCTTGCGATCAAACCCATCTGATTTTGAGCGTTACGATACAACCAT
CGGAATTCCAACAAACTTGAAAGATGGTTTCTACTCTCTCCAAGCCTCTA
TGATAGTAGGCAATGGAGGTGTTTACAATAGTTGTGCTAAACTAAAGGTC
ACAGGTGGAAGCCCGTCATTCACGTGCAGCCCCAGCAAGACACCAGTTTC
TTACAGTTGTCGCACTGCACTGAGCAAAGATATCTCGCCCATAAAATCAG
TTCCTGTTACCGAAGTTGAAGCGGGCGATCGATTGAAAGTGGGATGGGTT
TCGAACAACCATGGTGGTGGTTTTGCACGCATTGCTTTAGTACCTTGGAA
TGAACGAAAAAATGCTCAAAGTTATAAAAACAATGTCATGAAATTCGCAT
GTTATGGACATGATGAGAGACCTGGTAGATATGGATCTGGTGATTGTAAA
CATCCTTGCAATGGAAGACCTGGATGCGAATATCAATCTGGTCTTTCAAT
CCAAGACTGGGACGAGGAGGGATCATTGGAGGCGCACAATGTGAAGGGGA
ATGGGGCACAATTCGCTCATTCGTGGATGACATGCCCACCGGACAAAACG
CGGTAATTTTTGTTATGGTCTTGACGGTAAAGTTGGTACAGTGGATGATT
ATATGACAGATGTACCAATCAACGTTGATTGCGACCCACGTGCTTCTTGC
GATCAAACCCATCTGATTTTGAGCGTTACGATACAACCATCGGAATTCCA
ACAAACTTGAAAGATGGTTTCTACTCTCTCCAAGCCTCTATGATAGTAGG
CAATGGAGGTGTTTACAATAGTTGTGCTAAACTAAAGGTCACAGGTGGAA
GCCCGTCATTCACGTGCAGCCCCAGCAAGACACCAGTTTCTTACAGTTGT
CGCACTGCACTGAGCAAAGATATCTCGCCCATAAAATCAGTTCCTGTTAC
CGAAGTTGAAGCGGGCGATCGATTGAAAGTGGGATGGGTTTCGAACAACC
ATGGTGGTGGTTTTGCACGCATTGCTTTAGTACCTTGGAATGAACGAAAA
AATGCTCAAAGTTATAAAAACAATGTCATGAAATTCGCATGTTATGGACA
TGATGAGAGACCTGGTAGATATGGATCTGGTGATTGTAAACATCCTTGCA
ATGGAAGACCTGGATGCGAATATCAATCTGGTCTTTCAATCCAAGACTGG
GACGAGGAGGGATCATTGGAGGCGCACAATGTGAAGGGGAATGGGGCACA
ATTCGCTCATTCGTGGATGACATGCCCACCGGACAAAACGCGGTAATTTT
TGTTATGGTCTTGACGGTAAAGTTGGTACAGTGGATGATTATATGACAGA
TGTACCAATCAACGTTGATTGCGACCCACGTGCTTCTTGCGATCAAACCC
ATCTGATTTTGAGCGTTACGATACAACCATCGGAATTCCAACAAACTTGA
AAGATGGTTTCTACTCTCTCCAAGCCTCTATGATAGTAGGCAATGGAGGT
GTTTACAATAGTTGTGCTAAACTAAAGGTCACAGGTGGAAGCCCGTCATT
CACGTGCAGCCCCAGCAAGACACCAGTTTCTTACAGTTGTCGCACTGCAC
TGAGCAAAGATATCTCGCCCATAAAATCAGTTCCTGTTACCGAAGTTGAA
GCGGGCGATCGATTGAAAGTGGGATGGGTTTCGAACAACCATGGTGGTGG
TTTTGCACGCATTGCTTTAGTACCTTGGAATGAACGAAAAAATGCTCAAA
GTTATAAAAACAATGTCATGAAATTCGCATGTTATGGACATGATGAGAGA
CCTGGTAGATATGGATCTGGTGATTGTAAACATCCTTGCAATGGAAGACC
TGGATGCGAATATCAATCTGGTCTTTCAATCCAAGACTGGGACGAGGAGG
GATCATTGGAGGCGCACAATGTGAAGGGGAATGGGGCACAATTCGCTCAT
TCGTGGATGACATGCCCACCGGACAAAACGCGGTAATTTTTGTTATGGTC
TTGACGGTAAAGTTGGTACAGTGGATGATTATATGACAGATGTACCAATC
AACGTTGATTGCGACCCACGTGCTTCTTGCGATCAAACCCATCTGATTTT
GAGCGTTACGATACAACCATCGGAATTCCAACAAACTTGAAAGATGGTTT
CTACTCTCTCCAAGCCTCTATGATAGTAGGCAATGGAGGTGTTTACAATA
GTTGTGCTAAACTAAAGGTCACAGGTGGAAGCCCGTCATTCACGTGCAGC
CCCAGCAAGACACCAGTTTCTTACAGTTGTCGCACTGCACTGAGCAAAGA
TATCTCGCCCATAAAATCAGTTCCTGTTACCGAAGTTGAAGCGGGCGATC
GATTGAAAGTGGGATGGGTTTCGAACAACCATGGTGGTGGTTTTGCACGC
ATTGCTTTAGTACCTTGGAATGAACGAAAAAATGCTCAAAGTTATAAAAA
CAATGTCATGAAATTCGCATGTTATGGACATGATGAGAGACCTGGTAGAT
ATGGATCTGGTGATTGTAAACATCCTTGCAATGGAAGACCTGGATGCGAA
TATCAATCTGGTCTTTCAATCCAAGACTGGGACGAGGAGGGATCATTGGA
GGCGCACAATGTGAAGGGGAATGGGGCACAATTCGCTCATTCGTGGATGA
CATGCCCACCGGACAAAACGCGGTAATTTTTGTTATGGTCTTGACGGTAA
AGTTGGTACAGTGGATGATTATATGACAGATGTACCAATCAACGTTGATT
GCGACCCACGTGCTTCTTGCGATCAAACCCATCTGATTTTGAGCGTTACG
ATACAACCATCGGAATTCCAACAAACTTGAAAGATGGTTTCTACTCTCTC
CAAGCCTCTATGATAGTAGGCAATGGAGGTGTTTACAATAGTTGTGCTAA
ACTAAAGGTCACAGGTGGAAGCCCGTCATTCACGTGCAGCCCCAGCAAGA
CACCAGTTTCTTACAGTTGTCGCACTGCACTGAGCAAAGATATCTCGCCC
ATAAAATCAGTTCCTGTTACCGAAGTTGAAGCGGGCGATCGATTGAAAGT
GGGATGGGTTTCGAACAACCATGGTGGTGGTTTTGCACGCATTGCTTTAG
TACCTTGGAATGAACGAAAAAATGCTCAAAGTTATAAAAACAATGTCATG
AAATTCGCATGTTATGGACATGATGAGAGACCTGGTAGATATGGATCTGG
TGATTGTAAACATCCTTGCAATGGAAGACCTGGATGCGAATATCAATCTG
GTCTTTCAATCCAAGACTGGGACGAGGAGGGATCATTGGAGGCGCACAAT
GTGAAGGGGAATGGGGCACAATTCGCTCATTCGTGGATGACATGCCCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022603XLOC_022603Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037909-proteinTCONS_00037909-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037909-exon-sc0001734-1575043694:30617..30646TCONS_00037909-exon-sc0001734-1575043694:30617..30646Clytia hemisphaericaexon
TCONS_00037909-exon-sc0001734-1575043694:30171..30241TCONS_00037909-exon-sc0001734-1575043694:30171..30241Clytia hemisphaericaexon
TCONS_00037909-exon-sc0001734-1575043694:29523..29762TCONS_00037909-exon-sc0001734-1575043694:29523..29762Clytia hemisphaericaexon
TCONS_00037909-exon-sc0001734-1575043694:28721..28954TCONS_00037909-exon-sc0001734-1575043694:28721..28954Clytia hemisphaericaexon
TCONS_00037909-exon-sc0001734-1575043694:28078..28193TCONS_00037909-exon-sc0001734-1575043694:28078..28193Clytia hemisphaericaexon
TCONS_00037909-exon-sc0001734-1510915933:30617..30646TCONS_00037909-exon-sc0001734-1510915933:30617..30646Clytia hemisphaericaexon
TCONS_00037909-exon-sc0001734-1510915933:30171..30241TCONS_00037909-exon-sc0001734-1510915933:30171..30241Clytia hemisphaericaexon
TCONS_00037909-exon-sc0001734-1510915933:29523..29762TCONS_00037909-exon-sc0001734-1510915933:29523..29762Clytia hemisphaericaexon
TCONS_00037909-exon-sc0001734-1510915933:28721..28954TCONS_00037909-exon-sc0001734-1510915933:28721..28954Clytia hemisphaericaexon
TCONS_00037909-exon-sc0001734-1510915933:28078..28193TCONS_00037909-exon-sc0001734-1510915933:28078..28193Clytia hemisphaericaexon
TCONS_00037909-exon-sc0001734-1491911889:30617..30646TCONS_00037909-exon-sc0001734-1491911889:30617..30646Clytia hemisphaericaexon
TCONS_00037909-exon-sc0001734-1491911889:30171..30241TCONS_00037909-exon-sc0001734-1491911889:30171..30241Clytia hemisphaericaexon
TCONS_00037909-exon-sc0001734-1491911889:29523..29762TCONS_00037909-exon-sc0001734-1491911889:29523..29762Clytia hemisphaericaexon
TCONS_00037909-exon-sc0001734-1491911889:28721..28954TCONS_00037909-exon-sc0001734-1491911889:28721..28954Clytia hemisphaericaexon
TCONS_00037909-exon-sc0001734-1491911889:28078..28193TCONS_00037909-exon-sc0001734-1491911889:28078..28193Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001734supercontigsc0001734:28078..30646 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0620258	0	0	0	0.483067	0.290476	0	1.48814	0	0	0.365407	0.727678	0	0	0	0.0767267	0	0	0.295051	0.693268	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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