TCONS_00037907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037907
Unique NameTCONS_00037907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037907 ID=TCONS_00037907|Name=TCONS_00037907|organism=Clytia hemisphaerica|type=transcript|length=513bp
GATCAAAACTCAATGAAATGAATTTCTTGATTTCATTCTAGTTCCTGTTA
CCGAAGTTGAAGCGGGCGATCGATTGAAAGTGGGATGGGTTTCGAACAAC
CATGGTGGTGGTTTTGCACGCATTGCTTTAGTACCTTGGAATGAACGAAA
AAATGCTCAAAGTTATAAAAACAATGTCATGAAATTCGCATGTTATGGAC
ATGATGAGAGACCTGGTAGATATGGATCTGGTGATTGTAAACATCCTTGC
AATGGAAGACCTGGATGCGAATATCAATCTGaCCCATCTGATTTTGAGCG
TTACGACACAACCATCGGAATTCCAACAAACTTGAGGGATGGTTTCTACT
CTCTCCAAGCCTCTATGATAGTAGGCAATGGAGGTGTTTACAATAGTTGT
GCTAAACTAAAGGTAACAGGTGGAAGCCCGTCATTCACGTGCAGCTCCAG
CAAGACACCAGTTTCTTACAATTGTCGCACTGCGTTGAGCAAAGATATCT
CGCCGATAAAATC
Run BLAST on NCBI

transcript from alignment at sc0001734:22840..29803-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037907 ID=TCONS_00037907|Name=TCONS_00037907|organism=Clytia hemisphaerica|type=transcript|length=6964bp|location=Sequence derived from alignment at sc0001734:22840..29803- (Clytia hemisphaerica)
GATCAAAACTCAATGAAATGAATTTCTTGATTTCATTCTAGTTCCTGTTA
CCGAAGTTGAAGCGGGCGATCGATTGAAAGTGGGATGGGTTTCGAACAAC
CATGGTGGTGGTTTTGCACGCATTGCTTTAGTACCTTGGAATGAACGAAA
AAATGCTCAAAGTTATAAAAACAATGTCATGAAATTCGCATGTTATGGAC
ATGATGAGAGACCTGGTAGATATGGATCTGGTGATTGTAAACATCCTTGC
AATGGAAGACCTGGATGCGAATATCAATCTGGTATGGAACTTAAAACTCT
CAAATATCTTTGCAACTTTGCAGGTTTACCCTTCGGTCACACTATAGTCC
GTATAAAAACCCTTTGACTGGGAAATCATCATTTTACACCCCGAAATTTG
GAAAACATGCTTGGGAAATCCCCATTTTACATCCCAAAATTGGGAAAACC
CATGCCTGGGAAATTGTCATTTTACAACCCGAAATTTGGAAAACCCAAGC
CAGGGAAATAACCACTTTCCAGGCCTGTAGCTGTTTCATTTTTCCAGGGC
AAATCCAATCCCGAAAATTGTCATTTCCCAGGCCAGGAGATTTAAGATTT
TCCTTGACTGTTATAACCTTTTGTTCCAGTTTTTGATCAGGTTACAAAAT
GCTCCCCTATTCGTCAAACTTGCGGAATTACTTTCATTTTAATGTTCTGC
GATTCAGAAACTTGAACCTCTATGACTCGAAAGAATACTGGTTCCGCACA
TTTTTGTTGTCCAAGTCAGGAGACCTGATAGTATTTCAACCCACAGAATC
TATCACTTTCAACCAATAATATTGCTCATGAAATATTATTAACTTTTAGA
CCCATCTGATTTTGAGCGTTACGATACAACCATCGGAATTCCAACAAACT
TGAAAGATGGTTTCTACTCTCTCCAAGCCTCTATGATAGTAGGCAATGGA
GGTGTTTACAATAGTTGTGCTAAACTAAAGGTCACAGGTGGAAGCCCGTC
ATTCACGTGCAGCCCCAGCAAGACACCAGTTTCTTACAGTTGTCGCACTG
CACTGAGCAAAGATATCTCGCCCATAAAATCAGGTAAAGCAACGATTTCA
GGTCATGTTCTCTTTGGCTCTAACGGAGAAGAATTTTTAGGAAACTTCCT
TTTATTCAAACCGCCCCCTTATATTTGGACCGCCCCGTTATTATTCGGAC
CACCTCTTTTACTATTCGGGACCTTAGAGTAAGAAACCTCCGCCAGCGCA
TTACGTGTTTAAAAAGGTTTAATAAAGAATAAAAACGTGTTATTAATATC
AAGACTTTGAATTGGAAATCACCTTTTCAAAAATTACGTCATGGACAACG
CTTACCTCGTACTTGTTTTCAAAATATTGCTATAGTTTCAGAATCAGGTA
GTGGTCGCACTCAAATAATTCATGAGAAGGTAAAAAATACATTTTTAGTC
CTTCAAAATTAGGTGAATGAATCACCTCACTTTTTTGCCGAGGAAGGCTA
TTTTGAAAATTCTCTTAAAACTTATTTTNAATTATTATTAAACTCTTACG
ACCAAAAAGTACTCCTTACTATAAATATTTGGGACAATAAGCTCTTTTCT
ATTCTTCCAGGGACAAAACGCGGTAATTTTTGTTATGGTCTTGACGGTAA
AGTTGGTACAGTGGATGATTATATGACAGATGTACCAATCAACGTTGATT
GCGACCCACGTGCTTCTTGCGATCAATCAGTAGACAAAGGTTCATGCAAT
AGACAGTTTCCATCCATGAAAAGCATCGTGGTAAGTGTTAAGACATGATT
TTTCTAAACTTCGAGTAAAGCTCTGATTGGCTGAGACAAGAAAAGATTAC
CTCATACTTTGGACATGTTGATAAAAATAAGTTTAGGTGAGCATTTTTTA
ACCAATCAGAGCTTTCCTCGACGTGTTTTCGTGTGACTTTTTTACATGAA
TCTGCTAATAGGAAATTTGTATAATTAATCAAACACTTTCGCAAAACCCC
TGTAATCTTTTTCAAAGTGCTTAAAAGTTTCACCAAGTTTGTTTGCATTT
AGAGAGGACATTGGATGGGGGTTGATTGGGCAAAAAAAGGCACGGGGAGT
GCCGCTGGTCAGGGTACCTTTTTTACCTCAATGAGTCCCCAGGTAGGGTC
GCAAAAACACCAAAATAGAAAAATCAGTCCCTCATAGGGGGAATCCCAGA
AGAAAGTGGAAAATTTTGAGAACATTTTGGAATTTCAGTCCCATTCAGGG
TCACTTTTTTCAAAAAACGACGTCCCACGTAGGGTCCATTTTTCGAATTT
CAGTGGCACATTCCCGTCGGGTGGCAAGGGTAATTGCTGCTTTATAGGGT
AACCGATTTACTCAACTTTGTATCTCTGTTGCACGTTCTTTGATTTAGGA
ATAAGTGTATAAAAAAATAACGCATCAGAACATTTTAAGGATTTACAGGG
TCTAGAACAAAATATTCATTCACAAAATGCCGAAAAAAGAACATTTTGAG
TACACTTTTAAACTTAAAACCAAAGGATTAAGAACACTGGAAGGGTTTGA
AATATATTTGACGTTCTTATAAAGAAGTAGTTATGTAGTCTAGTTGATGA
ATTTTCAATTTTGTTTTTTCTCAGGATGCTGGAAGTAACCCAAGACAACC
GTTTTGTCCTGCATACAAAGTCCTACCACAGATATGAAAGTCATCAACAT
GGAAGAGATAGCTTGTTGAGGAATTGATCAAATTGGAACCCTTATTGTAA
AATTGGAAGACTAAAGATTTAATGAAATCAAAATTGCCATCGATGGATGT
GCCTCCCGAATTGAATATATCAATAATTATTTGATTCCAAAAAAATTTAA
TTTTGACTAATATTTTAAAGAGTAAATTTAACAGAATTTAACAAGAAATA
GATTTGTCATTCTTTTGTCAATTTTTACAAGATGGTCATTTCAAAACAAC
AAAACTTTTAGTGCATAATCCTATCTTCATAATTGTAGGGGGCGGAGCGG
AGCATAAAATTCTGAACAAAAAAGTATACTACATTAAGTTTTATACTCAA
ACACACAAAAAGATAGGACGAATGAAAGTTCGAAATCCTGTAGAATTTGT
TACATTTTAGACAAAATTTGACGTCAAACTGACAGAATTTTGAACTTCGA
AAGCCTGTGCTTCTTTATATGTTTGATTAGTTTGCTGTAGTATATTTTTT
TTGCTCAGAATTTCATGCTCTATCCGATGGTATCAATCATTTTTGTTAAA
TTCAAAATTTGAAAATCGTCTATTTTTGCCTATTTTTGGTGTTAGGAATC
TTGCTTACAACGTCAGTTTTTCTACTTTCGAACCTATCACAGGAAACTTT
GAGTTTGAAGGGGATAGAGGGGAATCTCTGGGATGGTAATTGTCATTACC
CAACTAGCAAAAAATTCAAGTTGATGACATTCATGAATTATAACTGAAAG
TTTAGCCCTAAATCTAGACCAAAAGAGCAAATTTAGAACGGTCTGTAAAA
CGCTGTTTTGGAAAGGTGGTAGAAACTTGCCATGTGCCATGTCAATTGGA
GTTAAAGTACATAAAATTGACCAGAAACTACAGAAGTTAGGGAGGTTCAA
AGTTTACGAGTTCTTTTTTTTTATCTTCATTTTCGATACCTTTTTAGGAC
CAGTACTAGTAGCTCTATGTGATTTGACGTCAAATCTTGTCTTGATCGTA
ATACTGACGTCGGTATGTTTTTGAACTTCAAGCGATTGTATTTCTTTGTG
TGTTTTAGTCAGAGAGTTGTTGTAACACTGTACATTCTTTTGCTCAGAAT
TTCATGCTCTTTCAGATGGTACCAATCATTTTTTTTCGTTTATTTTGACT
TTTGAAAATTAGCTATTTCTCTACCCCTTATTTCCCTTGCAGTTTTGCCT
ATGGTGTCACTATTTTGGTCATAAAAAGTTTTCCCGGGCCTAATCCGCGT
CCTCCCTCTCAAAATATCTTGTAATATACTGTTCTTTGGAATAGACTAAA
AATGGCTAGGTCGTAGAAAAGATGTCACGGAACCCTAGGCTTGGCCCCCT
ACTATACTAAAACCTTAAAATTTGTAACCCCGTCACACTTCCCTCTAAAT
CTTCACGCGACGATTTTAAGTCACATGACTGAAGTGCATATATGTAATAA
AAGGACTGAAAAGTTTTTCGGAATTTCTTTTGAATACCACCATCCCAAGT
ACTTTGGAGAATTTCTTAAAAAGTAATTTTTTGTACGGACTGAATAAAAA
CTTTTCTCCATAAGCTCGTGCTACGATCGCTTACTTTTTTGATCGAAGCC
TCGCCATTGTTGGTAATCTCCGAGCAAATTCTGATACTCTGTGCATGACA
CGTATTCACTCTAAAGGCTATGGCTTCGCAAGAGAATTTTTTTATCCAAC
TTGGGATGAATATTGAGTGAGCTTTTGAGCACGTTGTGATTTGCTAAGGC
AAAACAATTGCACCAAAATCAAACATTAATCATAAACATATGAGTCCAAT
GGCTTTCACTTTCGTTTTCAAGCGATAAGTAACACGTTTTTTACTGTTTT
ACCCAGGTCCAATAATTCACCATTTTCCTTTAGAGCAGAGCGTAAGCAGA
CAGATTATATGTTATGTTATACACTTATATGTATCGGCGAAAAGAAAATT
TTCTCAGACCTGATTTAACGTTTAAAGAGGTTGAAGAACAGTCAACTTTT
TTTTAAAGCGCGTGTTTATTTTTTATAACGTAATCTCCTCCCCCCCCCCC
CCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAACATATTATTAACGTCTTTTTAAAGTTCATAACAT
CATTTTTGCAATTAAGTTCTTAATTACTCTTAAGGGGTTTGACTAAAAAG
CAATTATAAAGACAATTCTTTGTTAAAAGTGTTAAAAAATCTAAAACATA
ACTGGCCTGTAGCTGTTTCAATTTTACAGGGCAAATCCAATCCCGAAAAT
TGTCATTTCCCAGGCCAGGGGTTTTAAGATTTTTCCTTGACTGTTGTAAC
CTTTTGTTCTAGTTTTTGATCAGGTTACAAAATGCTCCCCTATTCGTCAA
ACTTGCAGAATTACTTTCATTTTAATGTTCTGCGATTCAGAAACTTGAAC
CTCTATGACTCGAAAGAATACTGGTTCCGCACATTTTTGTTGTCCAAGTC
AGGAGACCTGATAGTATTTCAACCCACAGAATCTATCACTTTCAACCAAA
AATATTGCTCATGAAATATTCTTAACTTTTAGACCCATCTGATTTTGAGC
GTTACGACACAACCATCGGAATTCCAACAAACTTGAGGGATGGTTTCTAC
TCTCTCCAAGCCTCTATGATAGTAGGCAATGGAGGTGTTTACAATAGTTG
TGCTAAACTAAAGGTAACAGGTGGAAGCCCGTCATTCACGTGCAGCTCCA
GCAAGACACCAGTTTCTTACAATTGTCGCACTGCGTTGAGCAAAGATATC
TCGCCGATAAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022603XLOC_022603Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037907-exon-sc0001734-1575043694:29523..29803TCONS_00037907-exon-sc0001734-1575043694:29523..29803Clytia hemisphaericaexon
TCONS_00037907-exon-sc0001734-1575043694:22840..23071TCONS_00037907-exon-sc0001734-1575043694:22840..23071Clytia hemisphaericaexon
TCONS_00037907-exon-sc0001734-1510915933:29523..29803TCONS_00037907-exon-sc0001734-1510915933:29523..29803Clytia hemisphaericaexon
TCONS_00037907-exon-sc0001734-1510915933:22840..23071TCONS_00037907-exon-sc0001734-1510915933:22840..23071Clytia hemisphaericaexon
TCONS_00037907-exon-sc0001734-1491911889:29523..29803TCONS_00037907-exon-sc0001734-1491911889:29523..29803Clytia hemisphaericaexon
TCONS_00037907-exon-sc0001734-1491911889:22840..23071TCONS_00037907-exon-sc0001734-1491911889:22840..23071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001734supercontigsc0001734:22840..29803 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.142623	0	0	0.260656	0.30433	0	3.56535	0.0918907	0	0.895981	1.5587	0.112835	0	0	0	0	0	0.898802	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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