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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037905 ID=TCONS_00037905|Name=TCONS_00037905|organism=Clytia hemisphaerica|type=transcript|length=190bp
GCTGttttgaaacatttgaaaaGATGAAGACATTATCAATTCTTTTGATC
GTTGGCTTTGCCACATTCGCAGTACTTGctCAGCCGGTCCGACCCGCTGT
ACCTAAAAGAATTCAAAAGGAACTTGAGAAGGGAATCGTCAAAGAATTAT
CCAAAGAAGTTGTGAAAAAGTTGGAAAAAGGAGCTGAAAC Run BLAST on NCBI transcript from alignment at sc0001734:8923..18663- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037905 ID=TCONS_00037905|Name=TCONS_00037905|organism=Clytia hemisphaerica|type=transcript|length=9741bp|location=Sequence derived from alignment at sc0001734:8923..18663- (Clytia hemisphaerica)
GCTGTTTTGAAACATTTGAAAAGATGAAGACATTATCAATTCTTTTGATC
GTTGGCTTTGCCACATTCGCAGTACTTGGTAAGCTCAATTTTACTTTGAA
TCTTCTTTAATTTATCATGAAAGAAACTGAGAAAAGTTTGAAGGGGCGGA
CAATATAATCACGAAGAAAGTTTATTAGCCCTACCCCAGGCAAAGCTACT
AGAAAAAGCGTCCCCAGGTACCCACAAGACACCCCCTCTGGAATGTTCGT
GATAGAGGGTTAGCCTGAAAACCATCCGTGATTCTCAAAATATAGATGTG
CAGGATCCCAAAAACAGTTAAAGACCGTGTTCACCGGCAGGTGGGGGTAA
TTGCTCCATATTGCCTGGACTATTATGATAATCAAAGCAGGAATGTGGTC
AAGTTTTTGTTATCAAAGTCTTCCTTGACCAATTAAAAAGATTCGCTTAG
AGGTCTCAATAATGATTCAATTGACTATTTTAGTACATTTTCCTTTTTAG
CCCGACCTGCCAAACCCGCTGTACCTAAAAGAATTCAAAAAGAACTTGAG
AAGGGAATCGTCAAAGAATTATCCAAAGAAGTTGTGAAAAGTAAGTCCTT
TTAAAACTGTTTCTTAATGGAAGAAAAGTTGGACTAAAATTTAACCATAA
CCTATAAACAAACATCTCTAACACTTTAGGAAACTGCCTACTAAAACACT
TGCTAAACGATTATAATTCAGCAAACTTTAAATATACAATGGCCGTTCTC
TAATTCCAGGTTCTACTTTTCGATACGCATCATTATTCAATAATATTAAA
AGTCTGACAAGAAACTCTCGTAAACGTAGACTAGTATAGTCGTTGAATGA
AAAACATCACACCGGAAAATCTTACTAGAGTGGTAAAATCAGGAAACCGT
ATCTAGAACGATATTCTCAAATTTCAGTTCTTTTCCTTCTCTCTCGCGCG
CTAATTCCCGTGTGAACGTTTTTCCGATTATACCTAGCCAGTACCCGACT
CCTAAATTTTGTTGAGCGCGGTAAATAACAGACTTGTTTACAAGTCTATC
GTAAACGANGTCCTAAATTTTGTTGCGCGCGGTAAATAACAGACTTGTTT
ACAAGTCTATCGTAAACGACGCTCTACTATTCCATACTCTCCCTCATTCG
ATGAAAATCCCTTTGAAAATCGAATCAGAGAGCGTCAACTCTGGAGCTTA
AAATGTAAAAAATCATGTTGAAGTAACAATATAATATTCTCTTTCAGAAT
TAAAAGAAAAAGCTCAGCATGACGACGAAGACGATGATGATGCAGTATTG
GGTAAGATCTATTTTAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTCACGAAAATCAATGA
TTTTCAATGGAATTTTCAACAGTTTGATACTGAAAGATGACATTTTAATG
TAAATTTTAGTTAATACTTACTGTTTTAAAGCCTGAAAAGCGATTTTACA
AGTTTTGGCGTTATTTACGGCCCTAATTGGCGTAAGCCCATAATTAGGCT
GTGGCGGAATAAGGGCCGGCGTAAAAGAGGCCAGCGTTAAATTAGGACCG
GCGTAAAAAGGGCCGATAAGGTAGTAAATTAGTATGACTGGTGGTCTTGT
GACAACAAAGTCGACTTCCCCCTGAACTTTTTCCTTTTTGATGATTTTTG
ATGACGCTGAGAGTCCAGTGATTTAGACTAAATGATAATACTGTATGTAA
CGTTGTATGTATAGAGGTATCAACTAAGATAATATTGAACAGGGAAATTC
ATAGAGGTATCAACTAAGATAATATTGAACAGGAAAATTCATAGAGGTAT
CAACTAAATTAATATTGAACAGGAAAATTCATAGAGGGAATAACACTAAG
ATAATTGAACAGGAAATTTCATACGCAGAAAGGACAAAAATCGCCTGCTA
TATTAGTATCAAAGAAGCTTGACCAAACAAGGGCCAGGTGTTCGAGTATA
GGACTCTTTCTAAAGTTTTCGTATTGTTGGCAACCCAACAGAAAAGAAAA
TTACGAATATGAAACGATCTTATGGGCGCCTTCTTTGCCCGGGGGGGGGG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA
TGGGTTACGGGGATGCTCCGCTGGTCAGGGTACCTTTTTTAACGTCCACG
AGTCCCAGGTAGGGTCGCAAAAACACCAAAATAGAAAAATCAGTCTCCCG
TAGGGTGCCTATTTTTGGAAATTTTGGGGAAAAAGTAGAAAATTTGACAA
CATTTTGAAATTTTAGTCCCATTCAGGGTCACTTTTTTCGCAAATTTCGA
GTCCCACGTAGGGTCCATTTTTCGAACCTCAGTGGAGCACCCCCGTCGGT
CGACAAAGGTAGTACCCCCCGCGGGCTATTCTTTGGACTTTCGAAATCAC
ATTAGGATCTGTTGCAAAATTAAGGTACATATCTGATGGACAAATTGAGG
GTATTGTATTGTATCGTATTGTTTCTTTATTTCACGTTGGCTTTAAGAAT
TAACAGCTGGGGTTAAGAAAATTATAATGAANTTATTTCACGTTGGCTTT
AAGAATTAACAGCTGGGGTTAAGAAAATTATAATGAAATAACAAATTCTA
ATAAACACCAACCCCTATTAGATTTTTAATTACGGCATAATCTGTAGTTG
CAGGGAATTTAATTTTCTTTTGTGAATTTCTTAAGTAATTTTTCAAACTC
TTCAGAAGAAGAACATGAAACTTGGATTTCGTTTTTTTTAGAGATTTGAA
GACCTCATGTATAGAGCAATTCTTCTTTATAACCTTTTAGCACCTTCCAC
CTTTCCAAAGGCTATTTAAATGCCTCTCGTATGCAAAACAAAATTAGATT
GAAATATTGCTTTGCCTGGCGTCCNGTATCAACTAAGATAATATTGAACA
GGGAAATTCATAGAGGTATCAACTAAGATAATATTGAACAGGGAAATTCA
TAGAGGTATCAACTAAATTAATATTGAACAGGAAAATTCATAGAGGTATC
AACTAAATTAATATTGAACAGGAAAATTCATAGAGGTATCAACTAAATTA
ATATTGAACAGGGAAATTCATAGAGGTATCAACTAAATTAATATTGAACA
GGGAAATTCATAGAGGTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATTCATAGAGTTAT
CAACTAAAATAATATTGAACAGGAAAATTCATAGAGGTATCAACTAAATT
AATATTGAACAGGGAAATTCATAGAGGTATCAACTAAATTAATATTGAAC
AGGGAAAACCATAGCCTTATTAACTAAGATAATATTGAACAGGAAATTTC
ATACGCAGAAAGGACAAAAATCGCCTGCTATATTAGTATCAAAGAAGCTT
GACCAAACAAGGGCCATGTGTTCGAGTATAGGACTCTTTCTAAAGTTTTC
GTATTGTTGGCAACCCAACAGAAAAGAAAATTACGAATATGAAACGATCT
TATGGGCGCCTTCTTTGCCCGGGGGGGGGGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCGTCCACGAGTCCCAGGTAGGGTCGCAAA
AACACCAAAATAGAAAAATCAGTCCCCCGTAGGGTGCCTATTTTTGGAAA
TTTTGGGGAAAAAGTAGAAAATTTGACGACATTTTGAAATTTTAGTCCCA
TTCAGGGAAAGTGACCCTGAATGGGTCCCACGTAGGGTCCATTTTTCGAA
CCTCCGCGGAGCACCCCCGTCGGTCGACAAGGGTAGTACCCCCCGCGGGC
TTCTTTGGACTTTCGAAATCACATTAGGATCTGTTGCAAAATTAAGGTAC
ATATCTGATGGACAAATTGAGGGTATTGTATTGTATTGTATTGTTTCTTT
ATTTCACGTTGGTTTAAAAAAATAATAGCTTGGGTTAAGAAAATTACAAT
GAAATAACAAATTCTAATAAACACCAACCCCTATTAGATTTTTAATTACG
GCATAACCTGCAGTTGCAGGGAATTTAATTTTCTTTTGGGAAATTCTTAA
GTAATTTTTCAAACTCTTCAGAAGAAGAACATGAAACTTGGATTTCGTTT
TTTTTTAGAGATTTGAAGACCTCATGTATAGAGCAATTCTTCTTCATAAA
CTTTTAGCACCTTCCACCTTTCCAAAGGCTATTTAAATGCCTCTCGTATG
CAAAACAAAATTAGATTGAAATATTGCTTTGCCTGGCGTCCTTCTGGTTG
AGTATAATTTTCATGTCGGATGGGTAAAAATGCAACGAGTTTTGTAACAG
ACCTCTTAACCCATTCCGTGCCCATGTCAAGTTTATTCGACATTGCTAAA
TGCTTTTTAGAATCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTCAGTGGATCGTTGAGACGGGTTTGAGGTCATTAAGTTGGCTCTCTAGT
GCAGCTCCACTGTTGTGACAAAAGTGCCGGGATTCTCAAAGTAGCGCAAG
TACATGTCTTAACGAATGAGAGCTATCGAAACAGCCCCGAAAAATTTATC
AGCTTTTAGGCAGCTAAAAAATTATTTCCACGGAGGGCCACTAGTACATT
TACAGCCATCTAATACGTTTGATTATTTTACCAGCGTTCCATAATTTAAA
AAAGGAAGGATTTAATTCGTGAATATGGGTAAACCTATGGAGTTTTCTTG
GGCTCCACTCGAGAAAAGCACTTTTCAAAAATAGGATAATTGAACATCCC
TAGGTAGTCATAAGCTCGGGAAATTTCATTTTCATAACTAGAGAGCTGTT
GCACCTTCCCTAGCTATAAGGGTTGGTTAGGGAAAAATCCAGATTTCCAG
ATCTGGAAAAATACATTTACATAGGCTAAGGAATCAAAAAACTTTTCCTG
TAAACACAGGATTGTTGTCATGTGAAGTTTAGATTAACCTTCTGGAAAAC
TTTAACTTGTTCCTCGTGATTCGCTTCCCTGAAAAACCTTGCAGGAATAA
CATATTCAAATGATTCCTTATTTAAACAGATTGATTTTGAAAAAATTTCC
TTTGAGGAAATCAAAAATACCAAAGTAGGAAAATTTTTGAAACGATTTTC
CGCAATGAAACACATAAAAGAGGTTCAAAAACTGTGCATTTTCATTCATC
AGCTGTTTTCAGAGCATTTGAAAAGATGAAGACATTATCAATTCTTTTGA
TCGTTGGCTTTGCCACATTCGCAGTACTTGGTAAGCTCAATTTGACTTTG
AATCTTATATTCATAATCTATTTGGTAGCGAACGAACGTTAGAGGGTAAG
GAGAAAATCAGAGGAATAATCCTTTCTACAAATTCTCCTCTGACAACCAC
AGTAAAACTTTGACCGAATTTTGGTGAATGTGAAAAAGGCTTTGACTTAA
GATCTTTATTTGAACCAAACATAGATTGCCAGAAATGTTTAACAAAACCT
CCAGCACGTACACATTCTGCATAATCTATAGTGGAAAACTTGATCTTTCT
GGTTAATTGTATACATTGGTGAACGGCGACCACAACTATACTCCTTNAAA
CTTGATCTTTCTGATTAATTGTATACATTGGTGAACGGCGACCACAACTA
TACTCCTTCCGTTAAATACGCCCTTGATTTAGAAAAAAGATTTTCCAGTA
GAACGGAAAAAGTAGGCCGATACTAATAAGGTTCGCTTAGAGACCTAAAC
AAACCATCACTAAATGAACTTTTTTTTGCTTATTTTCCTTTTCAGCTCAG
CCGGTCCGACCCGCTGTACCTAAAAGAATTCAAAAGGAACTTGAGAAGGG
AATCGTCAAAGAATTATCCAAAGAAGTTGTGAAAAGTAAGTCCTTTTTTA
AAACTGTTTCTTAATGGAAAAAAGTTGGACTCAAATTTACCAAAAACCTA
TAAGCAAAAATTCAGGAAATTACCTTATCAATAACAATTTTTAATAAAGG
CTAACGATTTTTTCTATCACCAACCGGGAAACCTTATCCGTTCCATAAAA
AATCTCTCTTTTCATTCAGAGTTGGAAAAAGGAGCTGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037905-exon-sc0001734-1575043694:18586..18663 | TCONS_00037905-exon-sc0001734-1575043694:18586..18663 | Clytia hemisphaerica | exon |
| TCONS_00037905-exon-sc0001734-1575043694:9129..9218 | TCONS_00037905-exon-sc0001734-1575043694:9129..9218 | Clytia hemisphaerica | exon |
| TCONS_00037905-exon-sc0001734-1575043694:8923..8944 | TCONS_00037905-exon-sc0001734-1575043694:8923..8944 | Clytia hemisphaerica | exon |
| TCONS_00037905-exon-sc0001734-1510915933:18586..18663 | TCONS_00037905-exon-sc0001734-1510915933:18586..18663 | Clytia hemisphaerica | exon |
| TCONS_00037905-exon-sc0001734-1510915933:9129..9218 | TCONS_00037905-exon-sc0001734-1510915933:9129..9218 | Clytia hemisphaerica | exon |
| TCONS_00037905-exon-sc0001734-1510915933:8923..8944 | TCONS_00037905-exon-sc0001734-1510915933:8923..8944 | Clytia hemisphaerica | exon |
| TCONS_00037905-exon-sc0001734-1491911889:18586..18663 | TCONS_00037905-exon-sc0001734-1491911889:18586..18663 | Clytia hemisphaerica | exon |
| TCONS_00037905-exon-sc0001734-1491911889:9129..9218 | TCONS_00037905-exon-sc0001734-1491911889:9129..9218 | Clytia hemisphaerica | exon |
| TCONS_00037905-exon-sc0001734-1491911889:8923..8944 | TCONS_00037905-exon-sc0001734-1491911889:8923..8944 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001734 | supercontig | sc0001734:8923..18663 - |
Blast
The following BLAST results are available for this feature:
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