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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037900 ID=TCONS_00037900|Name=TCONS_00037900|organism=Clytia hemisphaerica|type=transcript|length=488bp
GGCTTTGCCACATTCGCAGTACTTGctCAGCCGGTCCGACCCGCTGTACC
TAAAAGAATTCAAAAGGAACTTGAGAAGGGAATCGTCAAAGAATTATCCA
AAGAAGTTGTGAAAAAATTAGAAAAAGGAGCTGAAACTGACGACGAAGAC
CTTGATGACGAAATTCTAGATCTCCAATTTTACGAAGATGCAAGGCCTCT
TTTCTTTAGATCGATATCGCGTGGTATTTCGTCTCTATTCTCCAGAAGAA
GAAGAGGGATAGGTTTCTAGTCTTCATTTAGCCCATCGGTTAGAACATTC
TAGTGTTCCGTTGATGAGACTATGCTGAGATCTTCGTTGCggatattata
taaaaatttaataatgGAAAATAGggcagaaaatatttttgattttgaaa
tatatcaacttgatcaatttttaaatcttaGCTGAAAAGTATCTATCAAA
ACTTCCTTTAACCTTGCAATTGTAGCTTTCACCAACCA Run BLAST on NCBI transcript from alignment at sc0001734:3176..9758- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037900 ID=TCONS_00037900|Name=TCONS_00037900|organism=Clytia hemisphaerica|type=transcript|length=6583bp|location=Sequence derived from alignment at sc0001734:3176..9758- (Clytia hemisphaerica)
GGCTTTGCCACATTCGCAGTACTTGGTAAGCTCAATTTGACTTTGAATCT
TATATTCATAATCTATTTGGTAGCGAACGAACGTTAGAGGGTAAGGAGAA
AATCAGAGGAATAATCCTTTCTACAAATTCTCCTCTGACAACCACAGTAA
AACTTTGACCGAATTTTGGTGAATGTGAAAAAGGCTTTGACTTAAGATCT
TTATTTGAACCAAACATAGATTGCCAGAAATGTTTAACAAAACCTCCAGC
ACGTACACATTCTGCATAATCTATAGTGGAAAACTTGATCTTTCTGGTTA
ATTGTATACATTGGTGAACGGCGACCACAACTATACTCCTTNAAACTTGA
TCTTTCTGATTAATTGTATACATTGGTGAACGGCGACCACAACTATACTC
CTTCCGTTAAATACGCCCTTGATTTAGAAAAAAGATTTTCCAGTAGAACG
GAAAAAGTAGGCCGATACTAATAAGGTTCGCTTAGAGACCTAAACAAACC
ATCACTAAATGAACTTTTTTTTGCTTATTTTCCTTTTCAGCTCAGCCGGT
CCGACCCGCTGTACCTAAAAGAATTCAAAAGGAACTTGAGAAGGGAATCG
TCAAAGAATTATCCAAAGAAGTTGTGAAAAGTAAGTCCTTTTTTAAAACT
GTTTCTTAATGGAAAAAAGTTGGACTCAAATTTACCAAAAACCTATAAGC
AAAAATTCAGGAAATTACCTTATCAATAACAATTTTTAATAAAGGCTAAC
GATTTTTTCTATCACCAACCGGGAAACCTTATCCGTTCCATAAAAAATCT
CTCTTTTCATTCAGAGTTGGAAAAAGGAGCTGAAACTGATGACGAAGACT
TTCATGACGAAATTCTAGATCACCAATTGGACGCAGATGCAAAGCCTCTT
TTCTTTGGAAAGATATGGAGTGGCATCAAGAGTATTTTCGGTTGAGGGTT
TATGAAACATTACCATGAACATCACAATGAAGATGGCAGATAATTTATTC
CCTTGTATTTTAATAGAAAGACTCTTGTAACATTTGAAAATAAAATAAAT
TGGCTAAGCAGGTCAAGATATCTAATCCTACAGATGCACTCGTCTAACCT
AAGGGATGAGGAAATTTATTTTCAACTTTCCTAAATTTCAAATTGATATA
AAAGCTTGTAATTTAAGGGTTAGTCAATAGTTAGTTACTATTATAAAGCA
TTATCTCACTCTTTTAAAAAGCTTTCTTTTTATTATTCATTATCAAATTA
GCCCATCACATCGGAAACCGTTTATTTAACCCAGATTAAGCATTAGCCAA
GATTATAAAGGCAAATTGTTTCATCACAAGCGATTTGAAATACCAATTAA
CTGTCAACTCTTAACTCTTTTTGCATCAAATAATTTAAAAGATGTCAAGT
TGGAAATCAACAATCAGGCCTTTTTGAGCGTTCTTGAGACGTTTTATAGG
GTTCCTAGAAAATTTCGGAACCACGTCCCCAGCCAATCGTTCCCAAACGT
TCAGCAACGTTTATGTTATGTTTTTAAATAAGTGATATCGACTGCTTACT
CATCAATCTTAATTCACAAGCCTTTTTACCTTAAGGGAACTTATTTTGTC
GAGAACTAATTTTAGCGAGCAGCAAAAATCGTAATGAAAAATAATTTTGG
CGAGAACTTATTTTGGCGAACAACTGGGAAAATCATCTTTTTTCTGCCTT
ATTTTTAGTATTTTTGTCGAAATGCAGGGCAATTTGGGAAAAATTCCAAA
AAATTTAATTTTGGCGATAACTAATTTTGGCGAGCGATCAAAATAATCAA
TTTTAGCGGGAACTAATTTTNGAACTAATTTTGGCGAGCGAACAAAATAA
TCAATTTTAGCGGGAACTAATTTGGCGATTTTTCTCTCATTTCGCCAAAT
TCTCCAAAATTAGTTCTCGCCAAAATAAGATCCCTTAGGGTACATTGAAT
TGACACGGATGTGGAGCAAGACTGGTCAGAAAGAGGAAAAGAAAAACATT
TTTTGATTATATCAGCATAGCATAACAATAGGCAGACACTGTCCTGGTAT
GAAGTATGTGTCTGATATGAAACGGGAACGCTTATGTGAAAATAAAATCT
TTAATATTGAACTCAATAAAAACGTTCCCGAACGTTCCAAAACATCCTTA
AACTAGTAAATAAAAGGGAATGGTAAGGAACGTTCAGGCTCTAGCGTTCT
TAAAATATTTCATAGCGTTCGTTTAACTGAAAACATTCCATTTTATTATA
TAAGGTCGCTTGTGATGACACAATTAACCGATACGCGATAGTGAATAAAA
TTTTGATTTGTGAGGAAAGTCTTAAAAGTCGCATCTTTTTTTACCATAAA
CAAATTTCTCATATCACAAAGAATATAATCGGCTTTAAAAGTTTCTGGAC
CAGAGAAAAGAACTCTCATTTTTTAACATCAGAGAATTTGTCGTTTTAGT
CACCCGTCACATCCGGGAGACAGTCAAGGCAAGCGATATGCCGTTGGTGA
GGCCTTTAAGGGTCCGTATCTCAGGCCTCTCAAAGTACACTGTAAGGGTT
GAAATGAGCAAGAATGAGAGAAAGTGCACACTAAGGGCAAAAATAGGAAG
AAAATAGACGTTTTTCGGACAAAATCTTGGAAATCTGACCACTTCTTGTC
TTAAAGTGGACAAATATTTTCAAAAGAGGATTGATTTTTCGCCCAAATTA
GAATGAAATCTCTCTCCACTATAAAGTTTCAATTTCAAAGGCCTACTCTC
TGGTCGCACAAACAGTCATTTTTAAATCAAGAGTCTCTCCCCCGCGGCGA
TCACATAATATTGCTAAAGATCATACATAAAAAATACAGTTCAGCTATAT
AATAGGTGTAGATGGCGTCCATAGTTTGGGTCGAACGAGAAAATCTTTGC
CTTTTAAACCACTCAAAATAATTTCTACTTTTGACAATGATTCGATAAAA
GAGGCCCCCCCCAGCGGTTTGCGTGATGGCGTGATTGGGACTTTTTTCTT
GCGTGAAGGCGTGATTAGAGATTTTTTTTGGCTTGATGGCGTGATCAAGA
TTTTGGCGTGATGCGTGATAGGGCAAAAATTTGAGGCGTGATGCGTGATT
TGGGCTATTTTTCGCTATTTTTTGCGTGATGAGAGATTTTAGCGATTTTC
GTGATGCGTGATGGAGAAAATATTTTTGCGTGATGGCGTGATTAGGGGTG
CCGCTGGGGGGGCATCATAAAAAAGTCGAAATATTCAGAAATTTCACCAT
CTCTCTATTTTTATTTTTGTACTTTGAATGACGAAATCAGGAAGATGAGC
CTTTTCGGTATAGCCCTTTAAGTGCCATGGACTTTTTTTTTCTATTTTTT
TTTTGAGAAAATTGCCAGTTCAAACTTCAAAGGCTTATATCTCAAGATCT
AGAAAGAGTTAGAATAATAGTCAAAAAATGGTCGAAATCTCAGAAAAGTT
ACTTTTGACTTTTTGGCTTAAAACTTCGCTGGAAAGACTCACTTTTGATT
TTTTTTTGATTGGCCACGAAGCACAATCCAAAAATGACGATCAAACTGGG
CATTACATGTCTAATATACCCCACATTGGCACTTAAAGGGTTAAGTTTTG
TTTTATTTGTTATCAAATTGTCTGGCAAAAATGAATTTTGGTACCTTAAA
GGATATTAGAAAAAGCAAAATTTCAATAAAACGGTCCATATTTCGAACCT
TAGTGGTACACCTCTTCGGTTGGCAAAGGTAGTACCCCCGGGCCCGGAGG
ATAAGTAAGTAAAAGTAGTAAAGTAAAAATTATCCAAAGTAAATTTGTAT
TATCGGTGGTCTTTTGACAACAAAGTCGACTTCTCCCTGAACTTTTCATT
TTGATGATTTTCGATGAGGCTGAGGGTCCAGTAATTTGGACTAAAGGATA
CTGTATGTAACGTTTTATGGACGTTGTGAACGTTAGATAAACGTCGAAAC
ACGTCGAAACAACGTTGTGTGCCAGATGAGAATTTACACTAAAGGATACT
GTATGTAACGTTTTATGTAGAGTTATCAACTAAATTATTATTGAACATGG
AAATTCATAGAGTTATCAACTAAAATAATATTGAACAGGAAAATTCANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGA
TTAATAAACGGGGGGGTCCTAATAAGGTCTGGGGGGTTGGAAAATTTTCG
AAAAATTAACAAGCGGGGGGGGGCCGTTTATTTGGAACCTAAGAGTAGTA
AAGTAAAAATTATCCAAAGTAAATTAGTATTATCGGTGGTCTTTTGACAA
CAAAGCCGACTTCTCCCTGAACTTTTCATTTTGATGATTTTCGATGACGC
TAAGGGTCCAGTAATTCAGACTAAAGGATACTGTATGTAACGTTTTATGG
ACGTTGTGAACGTTAGATAAACGTCGACACAACGTTGTGTGCCAGCTGGG
AATTTACACTAAAGGATACTGTATGTAACGTTTTATGTAGAGTTATCAAT
TAAAATAATATTGAACAGGGAAATTCATACAGTTATCAACTATAATAATA
TTGAACAGGAAAATTTATAGAGGTATCAACTAAAATAATATTGAACAGGA
AAATTCATACAGTTATCAACTAAAGTCTGTCCAGATATAATTGGCAGTGG
AAACAAGANCTAAATTATTATTGAACATGGAAATTCATAGAGTTATCAAC
TAAAATAATATTGAACAGGAAAATTTACAGAGGTATCAACTAAAATAATA
TTGAACAGGGAAATTCATAGACTTATCAACTAAGGTAATATTGAACAGGA
AAATTCATAGAGTTATCAACTAAATTAATATTGAACAGGAAAATTTATAG
AGGTATCAACTAAAATAATATTGAACAGGGAAAATCATAGCCTTATCAAC
TAAGATAATATTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCTTTTAGGTAGTCATAAGCTCGGGAAATTTCATTTTCATAACT
AGAGAGTTGTTGCACCTTCCCTAGCTAAGGGTTGGTTAGGGAAAAATCCA
GATTTCCAGATCTGGAAAAATACATTTACATAGCCTAAGGAATCAAAAAA
CTTTTCCTGTAAACACAGGATTGTTGTCATGTGAAGTTTAGATTAACCTT
CTGGAAAACTTTAACTTGTTCCTCGTGATTCGCTTCCCTGAAAAACCTTG
CAGGAATAACATATTCAAATGATTCCTTATTTAAACAGATTGATTTTGAA
AAAATTTCCTTTGAGGAAATCAAAAATACCAAAGTAGGAAAATTTTTGAA
ACGATTTTCCGCAATGAAACACATAAAAGAGGTTCAAAAACTGTGCATTT
TCATTCATCAGCTGTTTTCAGAGCATTTGAAAAGATGAAGACATTATCAA
TTCTTTTGATCGTTGGCTTTGCCACATTCGCAGTACTTGGTAAGCTCAAT
TTGACTTTGAATCTTATATTCATAATCTATTTGGTAGCGAACGAACGTTA
GAGGGTAGGGAGAAAAAAAGGGGAACAATCTTTTCTTTTCTACAAATTCT
TCTGTGATAACCACAGCAAAACTTGGCGCCACTAGTACCTCTTCATTGGA
TAGGCCCTTGCTTTATAAAAGGATCTTCCTATTGAACGGAAAAAGTAGGC
CGATACTATTAAGGTTCGCTTAGAGATCTAAACAAATTATCACTAAATGA
ACTTTTTTTGCTTATTTTCCTTTTCAGCTCAGCCGGCCCAACCCGCTGTA
GCTAAAAGAATTCAAAAGGAACTGGAGAAGGGAATCATCAAAGAACTTTC
CAAAGAAGTTGTGAAAAGTAAGTCCTTTTTTAAAACTGTTTCTTAATGGA
AGAAAAGTTGGACTAAAAATTTACCAAAAATAACCTATAAGCAAAAATTC
AGGAAATTACCTTATCAATAACAATTTTTAATAAAGGCTAACGATTTTTT
CTATCACCAACCGGGAAACCTTATAGTCCCGTTCCATAAAAAATCTCTCT
TCTTTTTCAGAATTAGAAAAAGGAGCTGAAACTGACGACGAAGACCTTGA
TGACGAAATTCTAGATCTCCAATTTTACGAAGATGCAAGGCCTCTTTTCT
TTAGATCGATATCGCGTGGTATTTCGTCTCTATTCTCCAGAAGAAGAAGA
GGGATAGGTTTCTAGTCTTCATTTAGCCCATCGGTTAGAACATTCTAGTG
TTCCGTTGATGAGACTATGCTGAGATCTTCGTTGCGGATATTATATAAAA
ATTTAATAATGGAAAATAGGGCAGAAAATATTTTTGATTTTGAAATATAT
CAACTTGATCAATTTTTAAATCTTAGCTGAAAAGTATCTATCAAAACTTC
CTTTAACCTTGCAATTGTAGCTTTCACCAACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037900-exon-sc0001734-1575043694:9734..9758 | TCONS_00037900-exon-sc0001734-1575043694:9734..9758 | Clytia hemisphaerica | exon |
| TCONS_00037900-exon-sc0001734-1575043694:9129..9218 | TCONS_00037900-exon-sc0001734-1575043694:9129..9218 | Clytia hemisphaerica | exon |
| TCONS_00037900-exon-sc0001734-1575043694:3176..3548 | TCONS_00037900-exon-sc0001734-1575043694:3176..3548 | Clytia hemisphaerica | exon |
| TCONS_00037900-exon-sc0001734-1510915933:9734..9758 | TCONS_00037900-exon-sc0001734-1510915933:9734..9758 | Clytia hemisphaerica | exon |
| TCONS_00037900-exon-sc0001734-1510915933:9129..9218 | TCONS_00037900-exon-sc0001734-1510915933:9129..9218 | Clytia hemisphaerica | exon |
| TCONS_00037900-exon-sc0001734-1510915933:3176..3548 | TCONS_00037900-exon-sc0001734-1510915933:3176..3548 | Clytia hemisphaerica | exon |
| TCONS_00037900-exon-sc0001734-1491911889:9734..9758 | TCONS_00037900-exon-sc0001734-1491911889:9734..9758 | Clytia hemisphaerica | exon |
| TCONS_00037900-exon-sc0001734-1491911889:9129..9218 | TCONS_00037900-exon-sc0001734-1491911889:9129..9218 | Clytia hemisphaerica | exon |
| TCONS_00037900-exon-sc0001734-1491911889:3176..3548 | TCONS_00037900-exon-sc0001734-1491911889:3176..3548 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001734 | supercontig | sc0001734:3176..9758 - |
Blast
The following BLAST results are available for this feature:
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