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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037896 ID=TCONS_00037896|Name=TCONS_00037896|organism=Clytia hemisphaerica|type=transcript|length=1812bp
TGTATATACCTGGAACGatttgaaatatgttttttctatctagtttttaa
aaaaagtattcatttctgataatttctttatttaatcatttttagTCTTT
CGATTAAAGTAAACATGGATTTTGATTTAAACAATTCAGGTTTAAATGAT
TTGTTAAAACACATCTCAAAACTTATGGATGAAAGTGATAGAAGGTACAA
AGATGCCAACAAGAAAGTAGCAAAATATATGCTTCTAAGAATAAAATGTC
TGAGAAACTCAATCAAGCTTATATGCTCAATAAAAAACTCAATTAAACAA
ACGTTCAATCAGGAAACTTTTGATAAGCTCGTCAGAATAGCCCCCCATAT
TGATAATTTGGTTATGATTTGGGAAGAAAAACATGAAGAAAGTGctgaaa
atagaataaaagttGGAAATTCTACAAATTTGAAGTTAATACCTGTTCAT
AATGGCCTTCCTGGGCGACCAGCTTATAAAATAGACTTTAACGTGCTGGA
GTCACTGAGAGATTGTCACTTCAATTTATCAACCATTGCTAAAATCTTTG
GTATTGACCGTACAACTCTGTGGAGAAAAATGAAAGCAGAGGGGTTTAAT
GTCACACTCAAATACTCAGATTTAAGGGATGAACAATTGGATACTGAAGT
AGCTGAAATCAAACAAAGTCGCCCATTAATAGGGGAGAAAATGGTTTGTG
GTATATTGAGAAGCAGAGGATACCATCTACAAAGATGGAGAGTAAGAGCA
AGTATCCATAGAGTGGATCCTATCAACACTGTAAAAAGATGGTTACAACG
CAATCCAAGATGGGTTTACAGTGTACCAGGCCCAAATAGCCTCTGGCACA
ACGATGGTTTGCATAAACTTATCAGATGGGGTTTTGTAATTCATGCGTGT
ATTGATGGTTTTTCCAGGATGGTGACATCTCTTCTCTGTGCCACCAATAA
TTATTCCAGAACTGCTTTGAAAGGGTTTTTGAAAGGAGTAGCTGCTTATG
GCATACCAGCACGTGTTAGAGGAGACAGAGGTGGTGAAAATGTTCAAATA
ATGCGATACATGAGAGAGAAGCAAGGATACGAGGGAGCATACATTCAAGG
AAAATCAGTCCACAATCAAAGGATAGAGAGGTTGCATTATGATACTACAC
ACTGTGTATTAGTATATTTTATTGACCTCTTCAAATTCATGGAAGAAATT
GGATGTCTTCGCAAGGATAATGATGTTGACCGTTTTGTTTTGCATTTTGT
TTACGTGCCTAGGATTCAAAAATCGTTAGATGAATTCCAAGAAGGGTGGA
ACCACCATAAACTGTCAACAGAATCAAATCAAACACCATACCAGCTTTGG
ACCTTGGGCATGATTGATAGTGAGAAACAAGCACAAAGAGGTGTCAGGAG
GTTTTACGCAGATACACATGATGATTTGTTTGGAGTTGATGTTTCGTCCA
ACCTCAATTGCATGCCGGATGATGTGACAACAGTTGAACTGCATGATGTT
ATGTTGACGAACCATGTAGATATTTTGGAAACAATAAAAAGTGAATTCAG
TCCTTTAAATGATGATGGGAACCATGGTATTGCATGTTTCCAAGAAGTTA
AAAGGAGAGTTTCGGaaataattaattaaaatttaaatgATTATACATAA
GACAAGTTTAGGGATCAGTTGCAAAATGATAAGTGTGAAAAAAAGTTTAG
TAAAGTTAAGGCTACACTGAAGCAATATTGCTTGTAACTTTTGCATTGTA
CGCACCGCACTTGAAGTTTGTGTTGTCTAAAAATtaatcaatattttcaa
aaataagagGGA Run BLAST on NCBI protein sequence of TCONS_00037896-protein >TCONS_00037896-protein ID=TCONS_00037896-protein|Name=TCONS_00037896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=504bp
MDFDLNNSGLNDLLKHISKLMDESDRRYKDANKKVAKYMLLRIKCLRNSI
KLICSIKNSIKQTFNQETFDKLVRIAPHIDNLVMIWEEKHEESAENRIKV
GNSTNLKLIPVHNGLPGRPAYKIDFNVLESLRDCHFNLSTIAKIFGIDRT
TLWRKMKAEGFNVTLKYSDLRDEQLDTEVAEIKQSRPLIGEKMVCGILRS
RGYHLQRWRVRASIHRVDPINTVKRWLQRNPRWVYSVPGPNSLWHNDGLH
KLIRWGFVIHACIDGFSRMVTSLLCATNNYSRTALKGFLKGVAAYGIPAR
VRGDRGGENVQIMRYMREKQGYEGAYIQGKSVHNQRIERLHYDTTHCVLV
YFIDLFKFMEEIGCLRKDNDVDRFVLHFVYVPRIQKSLDEFQEGWNHHKL
STESNQTPYQLWTLGMIDSEKQAQRGVRRFYADTHDDLFGVDVSSNLNCM
PDDVTTVELHDVMLTNHVDILETIKSEFSPLNDDGNHGIACFQEVKRRVS
EIIN Run BLAST on NCBI transcript from alignment at sc0001732:32228..34039 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037896 ID=TCONS_00037896|Name=TCONS_00037896|organism=Clytia hemisphaerica|type=transcript|length=1812bp|location=Sequence derived from alignment at sc0001732:32228..34039 (Clytia hemisphaerica)
TCCctcttatttttgaaaatattgattaATTTTTAGACAACACAAACTTC
AAGTGCGGTGCGTACAATGCAAAAGTTACAAGCAATATTGCTTCAGTGTA
GCCTTAACTTTACTAAACTTTTTTTCACACTTATCATTTTGCAACTGATC
CCTAAACTTGTCTTATGTATAATcatttaaattttaattaattatttCCG
AAACTCTCCTTTTAACTTCTTGGAAACATGCAATACCATGGTTCCCATCA
TCATTTAAAGGACTGAATTCACTTTTTATTGTTTCCAAAATATCTACATG
GTTCGTCAACATAACATCATGCAGTTCAACTGTTGTCACATCATCCGGCA
TGCAATTGAGGTTGGACGAAACATCAACTCCAAACAAATCATCATGTGTA
TCTGCGTAAAACCTCCTGACACCTCTTTGTGCTTGTTTCTCACTATCAAT
CATGCCCAAGGTCCAAAGCTGGTATGGTGTTTGATTTGATTCTGTTGACA
GTTTATGGTGGTTCCACCCTTCTTGGAATTCATCTAACGATTTTTGAATC
CTAGGCACGTAAACAAAATGCAAAACAAAACGGTCAACATCATTATCCTT
GCGAAGACATCCAATTTCTTCCATGAATTTGAAGAGGTCAATAAAATATA
CTAATACACAGTGTGTAGTATCATAATGCAACCTCTCTATCCTTTGATTG
TGGACTGATTTTCCTTGAATGTATGCTCCCTCGTATCCTTGCTTCTCTCT
CATGTATCGCATTATTTGAACATTTTCACCACCTCTGTCTCCTCTAACAC
GTGCTGGTATGCCATAAGCAGCTACTCCTTTCAAAAACCCTTTCAAAGCA
GTTCTGGAATAATTATTGGTGGCACAGAGAAGAGATGTCACCATCCTGGA
AAAACCATCAATACACGCATGAATTACAAAACCCCATCTGATAAGTTTAT
GCAAACCATCGTTGTGCCAGAGGCTATTTGGGCCTGGTACACTGTAAACC
CATCTTGGATTGCGTTGTAACCATCTTTTTACAGTGTTGATAGGATCCAC
TCTATGGATACTTGCTCTTACTCTCCATCTTTGTAGATGGTATCCTCTGC
TTCTCAATATACCACAAACCATTTTCTCCCCTATTAATGGGCGACTTTGT
TTGATTTCAGCTACTTCAGTATCCAATTGTTCATCCCTTAAATCTGAGTA
TTTGAGTGTGACATTAAACCCCTCTGCTTTCATTTTTCTCCACAGAGTTG
TACGGTCAATACCAAAGATTTTAGCAATGGTTGATAAATTGAAGTGACAA
TCTCTCAGTGACTCCAGCACGTTAAAGTCTATTTTATAAGCTGGTCGCCC
AGGAAGGCCATTATGAACAGGTATTAACTTCAAATTTGTAGAATTTCCaa
cttttattctattttcagCACTTTCTTCATGTTTTTCTTCCCAAATCATA
ACCAAATTATCAATATGGGGGGCTATTCTGACGAGCTTATCAAAAGTTTC
CTGATTGAACGTTTGTTTAATTGAGTTTTTTATTGAGCATATAAGCTTGA
TTGAGTTTCTCAGACATTTTATTCTTAGAAGCATATATTTTGCTACTTTC
TTGTTGGCATCTTTGTACCTTCTATCACTTTCATCCATAAGTTTTGAGAT
GTGTTTTAACAAATCATTTAAACCTGAATTGTTTAAATCAAAATCCATGT
TTACTTTAATCGAAAGActaaaaatgattaaataaagaaattatcagaaa
tgaatactttttttaaaaactagatagaaaaaacatatttcaaatCGTTC
CAGGTATATACA Coding sequence (CDS) from alignment at sc0001732:32228..34039 >TCONS_00037896 ID=TCONS_00037896|Name=TCONS_00037896|organism=Clytia hemisphaerica|type=CDS|length=1515bp|location=Sequence derived from alignment at sc0001732:32228..34039 (Clytia hemisphaerica)
ttaattaattatttCCGAAACTCTCCTTTTAACTTCTTGGAAACATGCAA
TACCATGGTTCCCATCATCATTTAAAGGACTGAATTCACTTTTTATTGTT
TCCAAAATATCTACATGGTTCGTCAACATAACATCATGCAGTTCAACTGT
TGTCACATCATCCGGCATGCAATTGAGGTTGGACGAAACATCAACTCCAA
ACAAATCATCATGTGTATCTGCGTAAAACCTCCTGACACCTCTTTGTGCT
TGTTTCTCACTATCAATCATGCCCAAGGTCCAAAGCTGGTATGGTGTTTG
ATTTGATTCTGTTGACAGTTTATGGTGGTTCCACCCTTCTTGGAATTCAT
CTAACGATTTTTGAATCCTAGGCACGTAAACAAAATGCAAAACAAAACGG
TCAACATCATTATCCTTGCGAAGACATCCAATTTCTTCCATGAATTTGAA
GAGGTCAATAAAATATACTAATACACAGTGTGTAGTATCATAATGCAACC
TCTCTATCCTTTGATTGTGGACTGATTTTCCTTGAATGTATGCTCCCTCG
TATCCTTGCTTCTCTCTCATGTATCGCATTATTTGAACATTTTCACCACC
TCTGTCTCCTCTAACACGTGCTGGTATGCCATAAGCAGCTACTCCTTTCA
AAAACCCTTTCAAAGCAGTTCTGGAATAATTATTGGTGGCACAGAGAAGA
GATGTCACCATCCTGGAAAAACCATCAATACACGCATGAATTACAAAACC
CCATCTGATAAGTTTATGCAAACCATCGTTGTGCCAGAGGCTATTTGGGC
CTGGTACACTGTAAACCCATCTTGGATTGCGTTGTAACCATCTTTTTACA
GTGTTGATAGGATCCACTCTATGGATACTTGCTCTTACTCTCCATCTTTG
TAGATGGTATCCTCTGCTTCTCAATATACCACAAACCATTTTCTCCCCTA
TTAATGGGCGACTTTGTTTGATTTCAGCTACTTCAGTATCCAATTGTTCA
TCCCTTAAATCTGAGTATTTGAGTGTGACATTAAACCCCTCTGCTTTCAT
TTTTCTCCACAGAGTTGTACGGTCAATACCAAAGATTTTAGCAATGGTTG
ATAAATTGAAGTGACAATCTCTCAGTGACTCCAGCACGTTAAAGTCTATT
TTATAAGCTGGTCGCCCAGGAAGGCCATTATGAACAGGTATTAACTTCAA
ATTTGTAGAATTTCCaacttttattctattttcagCACTTTCTTCATGTT
TTTCTTCCCAAATCATAACCAAATTATCAATATGGGGGGCTATTCTGACG
AGCTTATCAAAAGTTTCCTGATTGAACGTTTGTTTAATTGAGTTTTTTAT
TGAGCATATAAGCTTGATTGAGTTTCTCAGACATTTTATTCTTAGAAGCA
TATATTTTGCTACTTTCTTGTTGGCATCTTTGTACCTTCTATCACTTTCA
TCCATAAGTTTTGAGATGTGTTTTAACAAATCATTTAAACCTGAATTGTT
TAAATCAAAATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037896-exon-sc0001732-1491911889:32228..34039 | TCONS_00037896-exon-sc0001732-1491911889:32228..34039 | Clytia hemisphaerica | exon |
| TCONS_00037896-exon-sc0001732-1510915933:32228..34039 | TCONS_00037896-exon-sc0001732-1510915933:32228..34039 | Clytia hemisphaerica | exon |
| TCONS_00037896-exon-sc0001732-1575043694:32228..34039 | TCONS_00037896-exon-sc0001732-1575043694:32228..34039 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001732 | supercontig | sc0001732:32228..34039 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0043565 | sequence-specific DNA binding |
| GO:0003676 | nucleic acid binding |
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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