TCONS_00037890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037890
Unique NameTCONS_00037890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037890 ID=TCONS_00037890|Name=TCONS_00037890|organism=Clytia hemisphaerica|type=transcript|length=1598bp
CATAGTATTTGTGGTGTATGCTGATTCAAAACCAGATGATAACGATGGTG
CTAATACTGTAGAGACTTTAAAAGATGAACCAAACATAGATTCAATTGaa
gtttttggccaatttttgtttaaaagACTCTCAACAAAAAAGGCTATCCA
AAGTAGTGAGACTTcaCTTAAACGCTCAAATGATGGAAGCTTACAAGGAG
AATTCGACAGAATAATTGAAAAGCTCAATGCTCAACTTTCCCTGATTGAA
GGTCAAGATGAATTAAAGCAACATATTTTTGAATGGGCTCATCATACACT
GATGCAAGACCTTAAACGAAAGAATAACATTGGCTCTTTAACACGTGGTG
AAATGGTATCCAATATGCACATGATTTTGAGCGGTAATCCTGGTACTGGA
AAAACGATGATCGCCAGATGTTTAGCAAGTATGTTTTTACTTAAACGGTA
TATTCTCAAATTGAAATTTGGAGTTGACTGATATATATTCCGTTCACATC
ATGTGGATAATGGTTCTTTTTTAAACCCTAAAATTTCACTGTATTTGATA
gtttaaagaaattgaaaatgaacgGACTATATTTGTTGTTTGCGAACACT
AtagatgaatattttttttaccttttaacTTCAGGTATACTACACGAGCT
CGAAGTTCTGGAATCTCCGGACATTGTTGAAGTTCAGAAGGAAAATATTG
TCTCTGGGTACGTTTCTGCAACTGCCAAAGACTGCAAAAAAGTCATCGAA
TCTGCCTTCGGCAAGCTTATGTTTATAGATGAAGCATACCAATTAGTGCC
AAATAAAGAAACCGATCCATCGACTCACTCCAACGAAGCAATTGAGACCA
TAATGAGGTACATGAACCCTCCTCCAAGTGGTCAAAAAGATCTATACCCA
GTGTTCATTTTTGCTGGATACCCAAAAGATATGgataaatttttggaaaa
agtaaaCCGTGGTGTGCGAAGAAGGATTAAGGAAAGATTCGAATTCAAGG
ACTACACCCCTGAAGAACTCTCCCGAATCACGTTAAATAAGATGCTGAGA
CAAAAATTGCAAATCCCATACGGTGTCGAAAAAACACTTGTCAGTGGATT
TATGTTGATCCCACCGAGTGTTCGATCGGAGCACAATGCCTCTCTGTCAG
AGGACTTATATAAAATTGTGGTCAAAAAGCAAGAGATGCGGTTGGGTTTC
TGTTCTTCTATCGATGAGCTGAGTTCGTATTCGAAAGAAGATTTTAGCCA
GGGCATTCAAACCCTCGTaaagaaatttgttttggaTCCACATAAAATTG
AGAAGCATCAAGAAGTTTGGTTGCATATTCCAGGGGTTGGCTTAGTCCCC
GGTTCGCCTATCACTCCAATGAAACACTAACCACACACATTGATTTATGT
AAAAGTGTACATATGTTTTTAACCTTTGTAACTTAGGACCAGATTTTTTA
ACGGCTGTATATAAttgtaaaaaagaagaaagtctGATCCAGAAATCCTG
GCAATCGGAGCGTTTTCATAGATTGCtctcaaagaaaaaaacatcttttg
taGAAAACGATGTGTCGTTGAAATAATAATTGTCAGAGATGATTTTTA
Run BLAST on NCBI

protein sequence of TCONS_00037890-protein

>TCONS_00037890-protein ID=TCONS_00037890-protein|Name=TCONS_00037890-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MNGLYLLFANTIDEYFFYLLTSGILHELEVLESPDIVEVQKENIVSGYVS
ATAKDCKKVIESAFGKLMFIDEAYQLVPNKETDPSTHSNEAIETIMRYMN
PPPSGQKDLYPVFIFAGYPKDMDKFLEKVNRGVRRRIKERFEFKDYTPEE
LSRITLNKMLRQKLQIPYGVEKTLVSGFMLIPPSVRSEHNASLSEDLYKI
VVKKQEMRLGFCSSIDELSSYSKEDFSQGIQTLVKKFVLDPHKIEKHQEV
WLHIPGVGLVPGSPITPMKH
Run BLAST on NCBI

transcript from alignment at sc0001732:24516..26674-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037890 ID=TCONS_00037890|Name=TCONS_00037890|organism=Clytia hemisphaerica|type=transcript|length=2159bp|location=Sequence derived from alignment at sc0001732:24516..26674- (Clytia hemisphaerica)
CATAGTATTTGTGGTGTATGCTGATTCAAAACCAGATGATAACGATGGTG
CTAATACTGTAGAGACTTTAAAAGATGAACCAAACATAGATTCAATTGAA
GTTTTTGGCCAATTTTTGTTTAAAAGGTAAAGTTTGAAGTTAATTCCTTG
TCATAAATCTTAGCTTTGACCAGAAGGCATCGAATTGAGAAAAACAGACC
ATTGCGAGCATTAATCAGGCTACAAATAATTTTTATTCGGGCTTTGTTTA
ATAGTTGAATTCAAAATCTTATGAAGATGGTATTTCTCATTTCATTTCAG
ACTCTCAACAAAAAAGGCTATCCAAAGTAGTGAGACTTCAGTAAGTGAAA
ATATGTCTATGACTGCTCGAAAAATGATTGTAAAGGTCATCACTTTATGT
TATCTTAATAATAACATTTTCCTCCAGTCAATTATCTAGCTGAGGGGTTT
GTCAACTTGATTAGAAAAGAAACTTAACTTCTTATTTTTATTCTTTCAGC
TTAAACGCTCAAATGATGGAAGCTTACAAGGAGGTATTTATTCATTTGAA
TTTTTTTGTTTCATGAGAAAATGAGTTAAATTGTTATCCCTAGATTAAAG
CTTCTAATTACTTTTTCATTACATATATCGGATCTTTTATTTCAAATTTT
GTTTTAAAATTTAACTTTTGTTCCTCTGTTGCATTTTGCTATAATTATCT
CTCATTTGAAAAGTCAGGTTGGTGCTGTATTTCATCTATTTCGATTTATT
TTATTTATCAGAATTCGACAGAATAATTGAAAAGCTCAATGCTCAACTTT
CCCTGATTGAAGGTCAAGATGAATTAAAGCAACATATTTTTGAATGGGCT
CATCATACACTGATGCAAGACCTTAAACGAAAGAATAACATTGGCTCTTT
AACACGTGGTGAAATGGTATCCAATATGCACATGATTTTGAGCGGTAATC
CTGGTACTGGAAAAACGATGATCGCCAGATGTTTAGCAAGTATGTTTTTA
CTTAAACGGTATATTCTCAAATTGAAATTTGGAGTTGACTGATATATATT
CCGTTCACATCATGTGGATAATGGTTCTTTTTTAAACCCTAAAATTTCAC
TGTATTTGATAGTTTAAAGAAATTGAAAATGAACGGACTATATTTGTTGT
TTGCGAACACTATAGATGAATATTTTTTTTACCTTTTAACTTCAGGTATA
CTACACGAGCTCGAAGTTCTGGAATCTCCGGACATTGTTGAAGTTCAGAA
GGAAAATATTGTCTCTGGGTACGTTTCTGCAACTGCCAAAGACTGCAAAA
AAGTCATCGAATCTGCCTTCGGCAAGCTTATGTTTATAGATGAAGCATAC
CAATTAGTGCCAAATAAAGAAACCGATCCATCGACTCACTCCAACGAAGC
AATTGAGACCATAATGAGGTACATGAACCCTCCTCCAAGTGGTCAAAAAG
ATCTATACCCAGTGTTCATTTTTGCTGGATACCCAAAAGATATGGATAAA
TTTTTGGAAAAAGTAAACCGTGGTGTGCGAAGAAGGATTAAGGAAAGATT
CGAATTCAAGGACTACACCCCTGAAGAACTCTCCCGAATCACGTTAAATA
AGATGCTGAGACAAAAATTGCAAATCCCATACGGTGTCGAAAAAACACTT
GTCAGTGGATTTATGTTGATCCCACCGAGTGTTCGATCGGAGCACAATGC
CTCTCTGTCAGAGGACTTATATAAAATTGTGGTCAAAAAGCAAGAGATGC
GGTTGGGTTTCTGTTCTTCTATCGATGAGCTGAGTTCGTATTCGAAAGAA
GATTTTAGCCAGGGCATTCAAACCCTCGTAAAGAAATTTGTTTTGGATCC
ACATAAAATTGAGAAGCATCAAGAAGTTTGGTTGCATATTCCAGGGGTTG
GCTTAGTCCCCGGTTCGCCTATCACTCCAATGAAACACTAACCACACACA
TTGATTTATGTAAAAGTGTACATATGTTTTTAACCTTTGTAACTTAGGAC
CAGATTTTTTAACGGCTGTATATAATTGTAAAAAAGAAGAAAGTCTGATC
CAGAAATCCTGGCAATCGGAGCGTTTTCATAGATTGCTCTCAAAGAAAAA
AACATCTTTTGTAGAAAACGATGTGTCGTTGAAATAATAATTGTCAGAGA
TGATTTTTA

Coding sequence (CDS) from alignment at sc0001732:24516..26674-

>TCONS_00037890 ID=TCONS_00037890|Name=TCONS_00037890|organism=Clytia hemisphaerica|type=CDS|length=813bp|location=Sequence derived from alignment at sc0001732:24516..26674- (Clytia hemisphaerica)
ATGAACGGACTATATTTGTTGTTTGCGAACACTATAGATGAATATTTTTT
TTACCTTTTAACTTCAGGTATACTACACGAGCTCGAAGTTCTGGAATCTC
CGGACATTGTTGAAGTTCAGAAGGAAAATATTGTCTCTGGGTACGTTTCT
GCAACTGCCAAAGACTGCAAAAAAGTCATCGAATCTGCCTTCGGCAAGCT
TATGTTTATAGATGAAGCATACCAATTAGTGCCAAATAAAGAAACCGATC
CATCGACTCACTCCAACGAAGCAATTGAGACCATAATGAGGTACATGAAC
CCTCCTCCAAGTGGTCAAAAAGATCTATACCCAGTGTTCATTTTTGCTGG
ATACCCAAAAGATATGGATAAATTTTTGGAAAAAGTAAACCGTGGTGTGC
GAAGAAGGATTAAGGAAAGATTCGAATTCAAGGACTACACCCCTGAAGAA
CTCTCCCGAATCACGTTAAATAAGATGCTGAGACAAAAATTGCAAATCCC
ATACGGTGTCGAAAAAACACTTGTCAGTGGATTTATGTTGATCCCACCGA
GTGTTCGATCGGAGCACAATGCCTCTCTGTCAGAGGACTTATATAAAATT
GTGGTCAAAAAGCAAGAGATGCGGTTGGGTTTCTGTTCTTCTATCGATGA
GCTGAGTTCGTATTCGAAAGAAGATTTTAGCCAGGGCATTCAAACCCTCG
TAAAGAAATTTGTTTTGGATCCACATAAAATTGAGAAGCATCAAGAAGTT
TGGTTGCATATTCCAGGGGTTGGCTTAGTCCCCGGTTCGCCTATCACTCC
AATGAAACACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022592XLOC_022592Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037890-exon-sc0001732-1575043694:26549..26674TCONS_00037890-exon-sc0001732-1575043694:26549..26674Clytia hemisphaericaexon
TCONS_00037890-exon-sc0001732-1575043694:26335..26374TCONS_00037890-exon-sc0001732-1575043694:26335..26374Clytia hemisphaericaexon
TCONS_00037890-exon-sc0001732-1575043694:26142..26175TCONS_00037890-exon-sc0001732-1575043694:26142..26175Clytia hemisphaericaexon
TCONS_00037890-exon-sc0001732-1575043694:24516..25913TCONS_00037890-exon-sc0001732-1575043694:24516..25913Clytia hemisphaericaexon
TCONS_00037890-exon-sc0001732-1510915933:26549..26674TCONS_00037890-exon-sc0001732-1510915933:26549..26674Clytia hemisphaericaexon
TCONS_00037890-exon-sc0001732-1510915933:26335..26374TCONS_00037890-exon-sc0001732-1510915933:26335..26374Clytia hemisphaericaexon
TCONS_00037890-exon-sc0001732-1510915933:26142..26175TCONS_00037890-exon-sc0001732-1510915933:26142..26175Clytia hemisphaericaexon
TCONS_00037890-exon-sc0001732-1510915933:24516..25913TCONS_00037890-exon-sc0001732-1510915933:24516..25913Clytia hemisphaericaexon
TCONS_00037890-exon-sc0001732-1491911889:26549..26674TCONS_00037890-exon-sc0001732-1491911889:26549..26674Clytia hemisphaericaexon
TCONS_00037890-exon-sc0001732-1491911889:26335..26374TCONS_00037890-exon-sc0001732-1491911889:26335..26374Clytia hemisphaericaexon
TCONS_00037890-exon-sc0001732-1491911889:26142..26175TCONS_00037890-exon-sc0001732-1491911889:26142..26175Clytia hemisphaericaexon
TCONS_00037890-exon-sc0001732-1491911889:24516..25913TCONS_00037890-exon-sc0001732-1491911889:24516..25913Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037890-proteinTCONS_00037890-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001732supercontigsc0001732:24516..26674 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32785	1.48789	0.318119	0.113174	4.51285	3.8854	2.78452	2.2415	0.769843	1.36466	2.00686	1.03507	1.09797	0.306034	1.28817	1.25744	1.1789	2.24835	0.183062	2.11413	2.21937	1.04047	1.17143	1.28168	0	0	2.20382	2.91545	1.40708	0.821813
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000641CbxX_CfqX
IPR003959ATPase_AAA_core
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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